Array 1 15486-20134 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIPH01000048.1 Vibrio cholerae strain 2633-78 NODE_19_length_80282_cov_269.972_ID_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15486 28 100.0 32 ............................ ATTAATGCCAACGGTGACGGTTTTGGTTGTGA 15546 28 100.0 32 ............................ GATAAATTCAGTGGCTGACTTACCGTATTCGC 15606 28 100.0 32 ............................ TACAGCGATGAAGCCAATGATGTGCTGATGGC 15666 28 100.0 32 ............................ TTATAGAGCCCAAGTTTGACCAAGCGGCGACA 15726 28 100.0 32 ............................ TGAAAAAATGGTGCTACGGTAAAGGCTCATTG 15786 28 100.0 32 ............................ ATAAGAGCGAAGTGTTGTTTGACTTTTCCGCA 15846 28 100.0 32 ............................ CAAGCCGCGCAAGCCTGACTGAGTGCCTGTAT 15906 28 100.0 32 ............................ TTCACCATGATCATGCGAGAGTCAATAGAAAC 15966 28 100.0 32 ............................ GATGGTGTAGCTTCGCTTTGGTTAGATGTTGG 16026 28 100.0 32 ............................ AAATGGCTCTGAAGCTGTTCCTGGTTGTGTCC 16086 28 100.0 32 ............................ TCATTTATATTTTGCAATGCGGCCTCTTGCAT 16146 28 100.0 32 ............................ ACTAATCTCAATATCAACCTAAAGGAAATGAT 16206 28 100.0 32 ............................ ACAGCGAAATATTTAATCGATAGGCTAATTTA 16266 28 100.0 32 ............................ ACAACATATCCGTGTCATAGGCGGCTTTTTGC 16326 28 100.0 32 ............................ ACATAGACGAAGGGGATCGCTGGAAGAAAGTT 16386 28 100.0 32 ............................ AAAGTTCACAGTAAGCGTAACCCCAGCAACCC 16446 28 100.0 32 ............................ CGCCAGAGCCAAGCGAAGAAGAGAAAAACGAT 16506 28 100.0 32 ............................ AATTGCCGAACCTACACGGCGCGGAATGTTGT 16566 28 100.0 32 ............................ GTTCGCTGAATGCGGACATGGGTTACATCACG 16626 28 100.0 32 ............................ GGAAGTCATGCTTGGAATGGTGGTGTTAACCG 16686 28 100.0 32 ............................ TGAAAAGGTAGTGCTACGGTAAAGGCTCATTG 16746 28 100.0 32 ............................ TCAAACATTTGAGAAGTGCCGCAGTATTTAGG 16806 28 100.0 32 ............................ TCTCAATGTGATGTTGATGTTTTAAAAACCCC 16866 28 100.0 32 ............................ GTGATGTTGATATGAGAGCTACTTACTCACTT 16926 28 100.0 32 ............................ TTTCAGTTCTTCGGCTTCACTTGGTTTTATTC 16986 28 100.0 32 ............................ TTTTGAACTAAGTTGACGGTATTCCCATTCTG 17046 28 100.0 32 ............................ ACTACTGTCCCAGTAGCACTGGTTGCATGGCG 17106 28 100.0 32 ............................ TTAAGCGGACATTGCAAAGCGGCTCCGCTGGC 17166 28 100.0 32 ............................ ACTCGTAATCGAAATTTTCAAAGACAACGTTA 17226 28 100.0 32 ............................ ATGTAATCAAATCCTGTATGCTCAGAGTTATG 17286 28 100.0 32 ............................ TGACACTTGGCTTCCCGAAGCGGCTCCTGCTC 17346 28 100.0 32 ............................ TTTACAATGACTATACAGCGCCCAATGGAATG 17406 28 100.0 32 ............................ AATTGCATCTAGCTACGGCTTTTCAGGATTTC 17466 28 100.0 32 ............................ TTGAGGTGATGAAGTCTAGAAAGTCAGCGACT 17526 28 100.0 32 ............................ TGATAAATCAACACGTTCACCATCAATGTATG 17586 28 100.0 32 ............................ TGAATAGTGACAGCAACATAACCGCCGTCACA 17646 28 100.0 32 ............................ TTTCTGCCAGATTGGATAGCAGGGATAATATG 17706 28 100.0 32 ............................ TTACACCGTACATACGCGAATTAATTTTAGAA 17766 28 100.0 32 ............................ TAAAAATAGAGCAGCAAAAATAAACCAAACAA 17826 28 100.0 32 ............................ TTTCACAAAAAGCAAAGCAATATGGAAATCAA 17886 28 100.0 32 ............................ ACAAGGGTATCTATTGCCGAGATCGCAAAGTG 17946 28 100.0 32 ............................ TATTAACTTTATGAGTCAATGGGGATAATCTG 18006 28 100.0 32 ............................ TGAAAGTAATCGTCTAATCGGCTATTTAACAT 18066 28 96.4 32 ...................A........ AAATGCGATAACCCAGAAAGTTAATGCCTTGA 18126 28 100.0 32 ............................ TACATGGCATTCATGAGGGACGGCAAGCTGAT 18186 28 100.0 32 ............................ TATTAAATATCGAGCGCATCAATGATGATATG 18246 28 100.0 32 ............................ TCTTTTTGAGAATTTTTCTTATTTAACTCTTC 18306 28 100.0 32 ............................ TTGAATCGAATGTTCATTTATTGCACAAATCG 18366 28 100.0 32 ............................ TGTTACATCGAGCACTGGTAAACTTTTGGCAA 18426 28 100.0 32 ............................ TTATCCAAGCATACGGTAGACTGCCTGAGTAA 18486 28 100.0 32 ............................ TAAAAACGCGGTCGCCATGGAATCCCCAAGCA 18546 28 100.0 32 ............................ GTTGTACTCAGTTTCATCGTCCGTAAACATGT 18606 28 100.0 32 ............................ TTTTTCATAGGCTCTTGTTGAGTTTCCACTCA 18666 28 100.0 32 ............................ GATCTTAAACATTCTGCGACCAGCTTTGTCTT 18726 28 100.0 32 ............................ TCAAGGGGAATAACAACATGTTGATGGTCATT 18786 28 100.0 32 ............................ AATCACCCGGATGGAATCGGCAATCGCGTCCA 18846 28 100.0 32 ............................ ATAAACATCCATACCCATTGATTTCGTGACAC 18906 28 100.0 32 ............................ TAGCATTAAGTGAATTGTTGGAGTGCCCACGC 18966 28 96.4 32 ...........T................ TTATGTATGCCCTGCAGGGCTGAAAACTGACG 19026 28 96.4 32 ...........T................ GTATTGCAACGGGAAAGGCGCGCCTTTGTCCT 19086 28 96.4 32 ...........T................ TGTATTGACGAAAGTCGATTTAATCAACAAAA 19146 28 96.4 32 ...........T................ AGAGCGAGGACGACCAACAATTGCATAAATCA 19206 28 96.4 32 ...........T................ TTGCTTGTCTGCCTAGCGTGGTTGCTAGGCAC 19266 28 96.4 33 ...........T................ GCTGCGCGGTGTGACCTGTCGCACATTTCGTAA 19327 28 96.4 32 ...........T................ TGTTACGAGGAGCAGCCGTAATGGACAGCAAT 19387 28 96.4 32 ...........T................ ATACGATGCGGTAGGGCGTGCCATGATAACCG 19447 28 92.9 32 C..........T................ TTGGTTCAGCACAGAAACTGGACGTTTGCAAA 19507 28 96.4 32 ...........T................ TGTCTATGAAGTGACAAAGCGAATGATTGTGC 19567 28 96.4 32 ...........T................ TGCCTCGTGGGTGAGCGTTTCCTGCACTAACC 19627 28 96.4 32 ...........T................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 19687 28 96.4 32 ...........T................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 19747 28 96.4 32 ...........T................ CGCTGGGCCAAAAAAGACCAGGATATCTTTTT 19807 28 96.4 32 ...........T................ GAATGCGCACTGGAAGTGGACGGTCAAGTGGT 19867 28 96.4 32 ...........T................ TCCGCCTGAATGTAATGCTGATGAAGTACTCA 19927 28 96.4 32 ...........T................ GCTCTCGATATCGGGCACACCCTACACGCGCA 19987 28 96.4 32 ...........T................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 20047 28 96.4 32 ...........T................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 20107 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================= ================== 78 28 98.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTACTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //