Array 1 2423222-2420837 **** Predicted by CRISPRDetect 2.4 *** >NZ_LR134313.1 Neisseria canis strain NCTC10296 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2423221 33 93.9 32 CT............................... AATTTCCTTTTTGATTGATAAACACCGCTTAA 2423156 33 97.0 36 A................................ TTGACTCCGTGAAGTTGGAAAAGGGCGCGATTGCTA 2423087 33 97.0 32 C................................ TTGTTGAGCCGTATGTCGGGTACGCAAACCGA 2423022 33 97.0 33 A................................ ATTGCATCGGACGGTATACCGCCTATTTGCGAC 2422956 33 93.9 32 TG............................... AGATTGTGCGGATTTGGCCGCGGCAGCGGCTT 2422891 33 93.9 34 TA............................... CTCCTTGTATCGCCAAGTCTTACCATCAAAAACG 2422824 33 100.0 31 ................................. ACAAAGGCCGCCGCAAGGGGCGCGGTATCAA 2422760 33 97.0 32 .G............................... TTGCCGCAGGGCAAACGATTCAAGCGCCGATT 2422695 33 93.9 32 AT............................... CGTTTCCAATGGTCATGCTCTATCACAGCCTT 2422630 33 93.9 32 AA............................... AATCAAACAATCCGAGACATCTATCAAGGCGG 2422565 33 93.9 35 AT............................... AGTTGTTTGCTTTGGAAACGGCGATGAGGGTAGGG 2422497 33 97.0 32 .A............................... AGTAGCCTGTGCTTTAGGTTTCTCATCAAGAG 2422432 33 93.9 36 CA............................... GCGTTTTTATGGGTTTTGAAATGACACAAGTAACTA 2422363 33 93.9 32 AA............................... GCGATATTGCCGCTCATGCGAAACGCGCGGGC 2422298 33 97.0 33 .T............................... TGTTTATTGAGGCGAAATCTTACAATGAAAAGC 2422232 33 93.9 31 TG............................... CATCATGCCAAATTGCAAGGCTTAAGCCGCC 2422168 33 97.0 32 T................................ TACCAATCCATATTTCTATGGATTTTTGGGGG 2422103 33 97.0 31 .G............................... AACAGCAAGTATTTGCCAACATAATGCGCGA 2422039 33 97.0 32 .G............................... ATCTTAGGTGCCGCGGGTATGTATGCCAAGTT 2421974 33 97.0 33 .G............................... ACGAATTGGCCGTGGAAAACGGCCTTTTTAGTG 2421908 33 100.0 33 ................................. AGACGGCCTTATTGCGCCGCCCAATACAGCCGC 2421842 33 97.0 32 A................................ TACTTCCCAGATTTCAACAAACCATCCTTTGC 2421777 33 93.9 33 TA............................... CAGGGTAGCATACAGATGCTGGAAAATGCAGCT 2421711 33 93.9 33 TT............................... ACCATACCCGAGTTGGGTCTTCGTGTTAGGGTG 2421645 33 97.0 31 T................................ TAAATTTTCGGTCGCCACAAAATACGAATAT 2421581 33 93.9 33 CT............................... CCCTTTACTAGCAGCCTCTCTAATTTTTTTATC 2421515 33 93.9 32 AA............................... CCATTGGAGAAAAAAACATGTATCAACTATAC 2421450 33 93.9 33 AA............................... TCGACTTGCTTAAAGAGCAAGGCGCAATGACCG 2421384 33 97.0 33 .A............................... TAAATTTTCGGTCGCCACAAAATACGAATATCT 2421318 33 100.0 38 ................................. GCTGATGCCGCCGGCCATTTCCAACAATTTGGCAAACG 2421247 33 100.0 32 ................................. GTTACCGTAAGCAATATTGTTTACAGTAGCCG 2421182 33 93.9 32 AT............................... TTCAGATTGCCGGGCTTGTTTTTGTAAAACTC 2421117 33 93.9 32 CT............................... GATTTGGAAATCGCCTGTGCCTACGGCCAACA 2421052 33 100.0 34 ................................. CTACTCTGAGGCGCTGGCCGATGTCAAGCGCATT 2420985 33 93.9 34 AT............................... GCGAAACGGCTTTGCCGAGCGAAATGGAGGCTTT 2420918 33 93.9 16 TT............................... AAGAAACTCGGCAAAT Deletion [2420870] 2420869 33 78.8 0 C.T..................A.A.T.....CT | ========== ====== ====== ====== ================================= ====================================== ================== 37 33 95.4 32 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GAAATAAGGGGAAATAGCGTGTTGATGTTGATTACTTATGATATTTCGCTGGAAGACGCGGCAGGGCAGGCGAGGCTGCGGCGCATCGCCAAACATTGCTTGGATTACGGCGTGCGCGTGCAATATTCGGTATTCGAGTGCGACGTAACGCCTGATCAGTGGGTAAAACTGAAGGCCAAGCTGCTCGATACCTACCAGCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAGGTGGAACACCACGGCGCGAAGGCGGCGGTGGACGTGTTTCAAGATACGCTGATCGTGTGAATCGCTAACCCGTGGTTCTCATGAAAATGCGGGGTGGTTAGCGATGCGGAGTTGTTCTTTAACAATCAGGAACTTGAAATATGCGAGTGGAGCAGAATAAGGCTGTGCTATACTCGTGTTCCGCTTTTTTGAAAACGTTAGCGCACAAAGGCTCTGAATGCTTTGTTTGGCAAGCATTTTCAAAGAGG # Right flank : TTAAATGATGGTACAGCCATTACAAACCAAATTTAAATTTGCTGCATTGTTGTGCCTTGATTCAAAGAAAAAATTTGAATTCAATAATTTATCGATAAATCAAATACTTGTTTTCTGTTTTGGCTCCGGATTTGCCGATTGGTAAGCAAAATTAAGTTGATTTGCTATAAGGTCATCAAAGGGCTACGGTAAAGGGGTAGCTTTGTTTTTCGTAGGCCGGCTAAGGTATAAGTTATGCGGTTCCGCCTGGCATGGAATTTTAAACGCTCCCTCATCGCTATCATCAATCTTCAAATACTTCCAAAGTATTATTTCCGTTCACTCTTTCTGCTACCCCTTTCCCCTTATTTTGCCGCTGCTTCTTAAGCTTTCTGTGCATATTTTTCTTGCGTGCAGTCATTTACACTTTTACACGTCGAAAATTTTTTTACACCAAACTTTACCGCTACCGTCCAATCATTAACGGCTATTTTTCAGGCAGGCATTGTGCTTGATTGGAT # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.02, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //