Array 1 9440-7887 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSL01000029.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SE121 HEIDELBERG_S11_trimmed_contig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9439 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 9378 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 9317 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 9256 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 9195 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 9134 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 9073 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 9012 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 8951 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 8890 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 8829 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 8768 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 8707 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 8646 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 8585 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 8524 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 8463 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 8402 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 8341 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 8280 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 8219 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 8158 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 8097 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 8036 29 96.6 32 .............T............... ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 7975 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 7914 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //