Array 1 2252451-2253592 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016092.1 Clostridium saccharobutylicum strain NCP 195 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 2252451 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 2252517 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 2252583 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 2252648 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 2252713 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 2252779 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 2252843 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 2252908 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 2252974 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 2253039 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 2253105 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 2253171 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 2253236 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 2253301 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 2253366 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 2253431 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 2253497 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 2253563 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : TATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2820276-2818157 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016092.1 Clostridium saccharobutylicum strain NCP 195 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2820275 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 2820209 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 2820145 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 2820079 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 2820013 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 2819948 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 2819881 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 2819816 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 2819752 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 2819686 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 2819621 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 2819556 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 2819490 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 2819425 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 2819361 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 2819295 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 2819229 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 2819164 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 2819099 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 2819035 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 2818969 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 2818904 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 2818839 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 2818773 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 2818708 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 2818642 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 2818578 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 2818511 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 2818446 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 2818380 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 2818316 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 2818250 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 2818186 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 2897981-2898111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016092.1 Clostridium saccharobutylicum strain NCP 195 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =============================== ================== 2897981 23 95.7 31 .................G..... ACTACCAGTACCTGTACCGAAGCCTCCGGCG 2898035 23 100.0 31 ....................... GCCACCAGTGCCTGTACCAAAACCACCTGCA 2898089 23 95.7 0 ................G...... | ========== ====== ====== ====== ======================= =============================== ================== 3 23 97.1 32 CCCATTCCGCTTCCTGAACCAAA # Left flank : CTAATTCTACCTCTGCACCTAATTCTTCCGTTCCCATTAAAGCTTCCTTAACAAGAATTTCTGAATTACTCATTTTTCTTCCACATGTTAATCCTAATATTTTCATATAATTTCTCCTTACATATAATATATTTATGAATATTGTTTTTACTCACTTTTTGAATTATATCAATTTATTTGTATTCTAATAAGTTATTTTTACCTTTAGATCAAAAAAACTAATTTTCTTAACATATGTACTCGTTATCAATTAAGTTATATACTTAATGAAATAAACTACCATATATAACTTATATAAAAAATTAACGACGATTTTACTTGTTGCATTTCACTTTAAAAACATTTTTATAATATTATTGTTTAATTTTCTGTATATAAAAAAGGATATGAATATAAATTCACATCCTATAATAAGCTTAATTTACTCGTAGTACAATCTATTTCTTTTATTTACAGTACTACTCCCATTTCTTGTATTTGTGCCTGTGCTTCCTCCTGTA # Right flank : AGCCACCAGTACCTGTAGAACCTCCAGTAGTTGTTCCTGTGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTTTTAGCAATTGAGATGCACCACTATTTTGCCAATTTTGAACTTGGTTAATTGCTTCTTGAGGAGTTTTTCCTAATCCAACAAGCACTCCCATCAAAGTAATCCTCTGATATAAACGTTGCATGTCAGTTCCCTGTGTACCCATGGTACTTCCCTGTGTACCCATGGTACTTTGATTACTTTCTCTTAAAGCATAACTGACTAATGGAGTAATATACCTAATCCAATCATCTGGAGTAAATTTTGATGTATCTTGCTTTGCTTGCCTGTTCATGGACATGAAGAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCATTCCGCTTCCTGAACCAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 4 4536759-4536586 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016092.1 Clostridium saccharobutylicum strain NCP 195 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 4536758 35 100.0 34 ................................... TGATAGTGCATTTTTGGGTTGTGTTGGTTTAACG 4536689 35 97.1 34 .....................G............. GGCTTCTGCATTTACTTACTGTATGGGATTAACG 4536620 35 94.3 0 ...........T...G................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 97.1 34 TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Left flank : CAGCAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTATGGAAGTTCCCTTGATGTAACAACAGATGCAGGACAAGCACCAGGAATAAACAGTGTTTCAGTAACTCCAGCAACTTCAAGTGTAGAGCAAGGTCATACTGAACAATTGACAGCAACAGTAGATGCAACAGGAGGAGCAGATCAAAGTGTAACTTGGTCAAGCAGTGATACAAATAATAAAGTAACAGTAGATGCAAATGGTTTAGTATCAGTAGCAGCAGATGCACAGCCAGGAGACTATACAATAACAGCTACATCAACAGTAGATGGAACTAAGAAAGGAACAGCAACATTAACAGTACATGGATTTAAATTTGCATTAAATGGAAATGAGTGTCAAATAACTGGGTATACAGGGACAAGTACAGACATTACAATACCATCTCAAATTGGTGGGAAGAGTGTAACAAGTATAGGTAATTATGCATTTAATGATTGTATTAACTTAATA # Right flank : GACTTCTGCATTTAGTTATATTAATAATGATGCAATATTCTATGTACCTGATTTGGCTAGAGCAGGATATGTTCAGTCATATAAGACAAATAGTAATAATATACAAATTATTTTGCCATCAGTTCCTTTAACGTTAGGTCAAAAAACAGCAACAACAGCAACAGTATCGTTTCCAGCACAAACAGGAGCGACTTAAGTAAAGCTGCAACAATCGGCAGATGGAGGAACTACTTGGAGTGATGCAGCAACAGGAGCGTTAGATGCTTCATCAACAAGTGCAACTGTAACAGGATTAACAGTAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTACGGAAGTTCCCTTGATGTAACAACGGATACAGCGGCAACGACAGCATACACAGTAGCAGCGGCGGCAGCAAGTTCATCACCAACAGCAGGAGTAGATAACGTAGTTACATTAACTGTGAAGGATTCAACTGGCAGCACAGATACAACCTTCACTG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //