Array 1 39696-40311 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF929259.1 Clostridioides difficile CD002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 39696 29 100.0 37 ............................. CAAATCAACAAGTGAAAAATCTATATCAAAACTAAAA 39762 29 100.0 36 ............................. ATGATTATAGTTCCTTTTCTTCTTCCAAAGTTATAA 39827 29 100.0 36 ............................. GGGCGTCCTCTAAAGACTTTTGTATATCCTTAACAG 39892 29 100.0 36 ............................. TTTATATCCAATATCGGGAGGGTCTATATTTTTTAA 39957 29 100.0 37 ............................. TAGACTACTTTACAAATAAACTTAACGAGTACAACGA 40023 29 100.0 36 ............................. TTTAAAGCCCAATCTAATCCGATTAAATTTCCTAGT 40088 29 100.0 35 ............................. TTGGGTCATTAGATGGATAATACGCTGTAAATTCT 40152 29 100.0 36 ............................. TCAGATAAAATAATTAAAATCTTTTTGTCTTCATTT 40217 29 100.0 37 ............................. TAATATATGACTTATAACTTTAATTTTTTGATTTTAC 40283 29 86.2 0 .................C...C.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 10 29 98.6 36 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATTATCATGTAGTGTACAAAATTGAGTAAATTCTATTGTATTAAATAATTTAGTTTAGTTTAATTTAGGGGGATTAATACAATGTATGAGAATTTACTTAAGGAGTACAATTTAAAAACTGATGAAGATGTAGAATATTTTGTGAAATTTGCTAATGCGTTATATGAACTAAAACAGAATAGCGAAGAAAAATTTCAAGAATATGTAGAGATACTAAGAGAAATACTTAGAGAGCAAGAAGAGAGAAAAAATAAGTAAAATAATATAGATAAAGCACTTGAATATTCTACTGTTTCAAGTGCTTTATATGGTAAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACACTTGAAATATAAGGTGTTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGGTCGCTCACTGCAAATTTAAGAGAGTTGTATATATGTAGGTATTGGAAATGCTTAGTTTATTTTGGG # Right flank : TTAAAAATAATTAAAAAACATTTACTTAGGTAGGTGTTTTTTTAATTGAAAGTAGATGGTTATAATGTAAAAAGTAATAAATTGGTAAAGTATGTAAGGATTATATGATATAATATTTTTAGCAAGAAGATGTAATCTACAATTTATAGAGTGGAGTTCATACAAAAGATTATCCTCCCAACGTATAGAAGGGAGGTGTGTATGTATGGATAATTTTTTGATTGGCGTATTAGCTAGCTTAACAGCTACTCTAATAGCTTACGTAATTGGTAAATTAATCAAAAAAGCAAAAAGCCACTCTCGTGCAAAGAGTGACCTAATAGTTGAATTTAAATTTATGTTTAAATCCAAGAAATGATTGAGTTTTAATGAACTCCACTCTACGACTAAATAGATTGTAGTTCTTCTTGCTTTTATTATACCACAAATTAGAAAAAATATTACCTATAATATTTTTTATAGTCAATAAAAAGATGAAATTTTTATACAAAATAATAATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 45585-45946 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF929263.1 Clostridioides difficile CD002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 45585 29 100.0 38 ............................. CGCTACGATTTGACAGCTAAAAATGTGCTTTTCTTAGC 45652 29 100.0 36 ............................. TTGGTTAAATAACATCTTCTAGCTCAACCTCGACTC 45717 29 100.0 39 ............................. CAAGCTTTTTGAGTTGCGCTATTAAGAGTTTCGGCTTTA 45785 29 100.0 37 ............................. TATCGAAAGTATCCCTCATCATAATCGCACTTTCAGT 45851 29 96.6 38 .......................T..... CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 45918 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 96.6 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGTGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAAATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTCTTGTTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTATATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTTTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCATACTTTAACTCTAATTTATCTAAGGCTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATACCTTATTGTAGTACCTATTACAACTTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTATGATGGGAATG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 28506-29754 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF929261.1 Clostridioides difficile CD002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 28506 29 75.9 203 T......TA....A..T.....C...T.. TCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAGCTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG CC [28516] 28740 29 100.0 37 ............................. CATCACCACCTCGGTATTCGTTTTTACTTTTTTTATT 28806 29 100.0 35 ............................. GCATATTGCAAATAGTTTGCTACTTCTTGCGAAAA 28870 29 100.0 37 ............................. TTTTTAAAAGAGGCTGGTTATTTAGTCCAGCCTCTTC 28936 29 100.0 37 ............................. CCTCCAGCTCTATGTGCCTCATTCTTATACTTCCAAA 29002 29 100.0 36 ............................. GTTTTAGTTGAAAAGAAACAAAAAGTAACAGCGTAA 29067 29 100.0 37 ............................. TTCGTTGACGCTGAACTAATCGAACATGTTGCTTTGA 29133 29 100.0 36 ............................. GGAAAAATAAAAGAAAAATTGGACGATATAATAAGA 29198 29 100.0 37 ............................. CTCAAGGTGGTTTGTGCTAACGCCATCAAGATTTAAT 29264 29 100.0 37 ............................. AAGGTGCAGAGGTTACTACAAGCGATACATGGGAAGA 29330 29 100.0 36 ............................. GATAAAATAATTGAATATGTAGCTTTCGATATGTGT 29395 29 100.0 37 ............................. AAGAGTTTTCTTAAACTAAGAATTGTTTTAGAATTTC 29461 29 100.0 37 ............................. TCTAGCATTGCACCTGTTTCAGCATCGAATTTTTTAC 29527 29 100.0 38 ............................. CTGTATATTTAGTAAATGTTTGTTCAAAGTTGGCAAAC 29594 29 100.0 37 ............................. AAAGTTAAATTTATTACATCTAATTCTGTCTCTTCAT 29660 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 29726 29 72.4 0 ......C.........AAT....AG..TA | ========== ====== ====== ====== ============================= =========================================================================================================================================================================================================== ================== 17 29 97.0 47 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TCGTTGTATTGACAATGCTCCTACGGAAGGAATTTGGGGAATTTTAAAGGTGGAAATGTACTATTTAAGGAAATTTGATACATATGAACAATTAGTTAAAATAATAGAGAATTATATATATTACTATAATAATTTTAGATATCAAAAGAGATTAAATTCTATGTCTCCACTTGAATTTAGGAAATATTTAAGTACAGAGATAGCATAATTTATTTTAAGTAGCTCTAAAAAAATTTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGTTCTTCTTG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAACATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGGGCAGTATCAATAAATATATTGTCTAAATTTTTTTTAGGAACTAGTTGACTAGCCATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTAGTCATATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13826-14183 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF929267.1 Clostridioides difficile CD002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 13826 29 100.0 37 ............................. TCAAAATTTGGAACAACTTTATCAGCAACCTTATTCC 13892 29 100.0 37 ............................. GTTATTGCTCCTATTAGTGCTGAACTTTTTAATTTAA 13958 29 100.0 37 ............................. CTTCGAGCTTACATGAGTAAATTTTTAGATGTTTAAT 14024 29 100.0 37 ............................. GGCATATTCCCATTGGTTACATTAACAGTCTTATATA 14090 29 100.0 36 ............................. TGTTGCTCTGCTAAAGAGTTATAATGTTTTGCTAAT 14155 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : TACTATTATATATAACTGAATATCTAAGTGACATTTAAGAAAAATACGATACTTACTGACATAAAACTGAACATTATTTAAAGATAACCTTGATTATATTTTCAGAAGCTTCTTTATCCATATCATATAAAATAAGAAAATATCTATTCATAGTTATTTTTATATCAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCTAGCTAGAAGAAGAACTATTAGAATAGATAATATAGTAAGTATTTACAGATATGCAGGTGTTCTTAAATTGATAAATTATTCCATTTTATTTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTTGCAACAAGTATAGGTAAAATACCCCAATAATTTATATAACATTTTCTCCCCTAAAATATAATTATTTTTTATCATTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTACCTTATAAGTAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAGGAGATGACCTTTGAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTACACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 9862-9700 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF929270.1 Clostridioides difficile CD002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 9861 29 100.0 37 ............................. TTGCTATACATTCATCACATATTGCTAGTATCATTGC 9795 29 100.0 38 ............................. GCATACACAACATTTTTAGAATTAATTATACTCTCTGT 9728 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 3 29 100.0 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GGAGTTCATGTATCAAAAAATTATCCTCCCGACGTTAAGAAGGGAGGTGAATATACATGGATAATTTTTTACAAGGCATACTAGCAAGTCTATCTGCTAGCTTAATAGTTTATATAGCTAGCAAACTATTTAGAAAGCGTAAAAAACCACTCAAAGCGGCAACTAAGAGTGGTTGGGAATTTGATTTAAAAATCAGATTCCATAAAACTAAGTAATTTCTAAATTATGAACTCCACTCTACAGCAAAATAGATTGTAGTTCTTCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAAATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATGTGTGTAGGCATTGGAAATACTCAATTTATTTTGGG # Right flank : TGTATCCAAAAAATTACAATAATCATACGAACTGCTAATATAAGCAGTCAATATATGTGTACATTTATCCATTTTATTTCCAAACATATAAATTATTATCCCCCTAAAAAACTTTCATAAAAACAAAAAGAACAATATCTCTTTGGCAACTGGCTGACATAACTCATAAGATATTTATATAAGTCTTAGTCCCTATAGCTTTGCGTCACTAAATTTCTCTAGTTTTGCCGATTTAGTCTTATTCTACAACTAAAATAATACAATAGAATTAGTTATTATTCAACAAGATTGTTTGAAAATTGAATAAATTTACAGATATGAACATAATTTTACACTTAAAAAACAGACTAAACATATAGAATACTTGGTAAAAATCACCTATAGTTTTTGTTCTAAAAAGTTCCTATTATTAATTTAAGCTAGATAAATTTGAAGAAGTGACATAAATTGAAAGAAGGAATATATTATGCTAAATAAAAAATTACCAGATATAGAATTAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3890-2285 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF929281.1 Clostridioides difficile CD002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3889 29 100.0 38 ............................. AAATATCAATCACCTTTCCTGCTACAATGTTAGAAACG 3822 29 100.0 37 ............................. GAAAAATATCATTAAAAACAGGTTTGTAAATATCCGC 3756 29 100.0 37 ............................. TCAACCTCTTGAAATAGTGTCTTTTTATTCATACTTC 3690 29 100.0 36 ............................. CATAATATCTCTATTTTTGCTGTTGCATAATCAGCA 3625 29 100.0 38 ............................. AGAAAATTTTGAATAATCTAAAAATATTTTTAGAAATG 3558 29 100.0 36 ............................. GAAGGTTTGACATTCTCAGCATACTCGGTAACTATT 3493 29 100.0 36 ............................. AAGAAAAATACTTTTATAACTATCTTTTAACTAATG 3428 29 100.0 35 ............................. AATGTAATTGAATTGCTTAATCCAACTATTTTCAG 3364 29 100.0 36 ............................. ATAAGAGTATATTAAAGCTTAATTCTGATTTAACGC 3299 29 100.0 37 ............................. TCAAAAATTATATTTTTAGGTTTATACCAGTTTGGTA 3233 29 100.0 36 ............................. TTTTTAACAGCTAATTTAATATTTCTATTTAAAGTA 3168 29 100.0 37 ............................. ATTTTTATGTGTCTTATGCTCATGACAGATAATAAAA 3102 29 100.0 37 ............................. TGTACCTACCTCGGTTCACAAAATTTCACGCTGAAAG 3036 29 100.0 37 ............................. TAAATTAAGGTTTGGGGACTAGTTAGGCATTTTGTAG 2970 29 100.0 36 ............................. TTTTTAAATATATCCTCTTATAACTCTACACAAGTA 2905 29 100.0 37 ............................. CTCTTTGTTTTCGTTTTGTTAACTTAATTATAGTTAA 2839 29 100.0 37 ............................. TGGGCTATAATAAAAAACAGATGGGGAGGAGCTTCTT 2773 29 100.0 37 ............................. CTTTTTGAGACAAGTTAGATTTCTAATTAAAAACAGT 2707 29 100.0 39 ............................. GACGAAGCTGTAGACGAAGGAAAACTAATTTTAATAAAT 2639 29 100.0 37 ............................. TATAAGCTATCTCATTGAGTGAATCAGCTATAATCTT 2573 29 100.0 37 ............................. TGTTCTAGCTCTTTTTTAATAGCATCATCTAATTTGC 2507 29 100.0 36 ............................. ACTTGTCTAGCCATTCAGTTTTTATTTTATCACCTG 2442 29 86.2 36 ................A......A...GT AGAATATTAGCAATATAAACGAGTATTTAGAAACTT 2377 29 79.3 35 ............TA...CA....A....A TTGTATAATCAACAATAGCATATACTAAAACATCC 2313 29 72.4 0 ACC.............A.CA...C....T | ========== ====== ====== ====== ============================= ======================================= ================== 25 29 97.5 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAAGTCGTTAAATAGAATTAGAAAGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGTAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGTATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGAAATATGAGGGATTGAAGGTGTATGATAACTATTATCGATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTACACCTATTTTGGG # Right flank : AAAATACACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAGGAAATTAAACAATAAAGACATAAATAAAATAATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAGGTAAAGAATACTGGCAAGATAACTATAATGCTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAAAACCCAAATACCAAAATATAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGCTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [18-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 161492-160608 **** Predicted by CRISPRDetect 2.4 *** >NZ_HF929282.1 Clostridioides difficile CD002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 161491 29 100.0 37 ............................. AAATATGATTCTCTTTAGCATAATTAATAAAAAACTC 161425 29 100.0 37 ............................. ACTCATAACAACACTATATACATAATAAATAAGCATA 161359 29 100.0 37 ............................. GAAATAGAAAAGTATAAAAATATTTATTCTCTTTATC 161293 29 100.0 36 ............................. ATGGTTTGGAAGGATATAACACTGTAAAGTACACAA 161228 29 100.0 36 ............................. TTTAAATTTTTAGAGATATAATATATCCTAAAAAGT 161163 29 100.0 37 ............................. AATTCTTTTACTGCATCACCTAATTTATCAACCGAAA 161097 29 100.0 37 ............................. ACGTTTGATAATAAAATAAAAATTGATGTTATTCCCA 161031 29 100.0 37 ............................. TCAGATGGATATGGAAGACGTTCAGCATTTCGTTTTA 160965 29 100.0 38 ............................. TTTATTGAATTTGCTAACAACATAAAAAAACAAAGCGA 160898 29 100.0 36 ............................. AGTTTAGTAGAACATTTTAGTATCAATTCAGCATAT 160833 29 100.0 35 ............................. TGCACTTTTACACCTTTTGATAAGCATACTCAACC 160769 29 100.0 38 ............................. TTTCTTGTAACCATTATTGTTATGTCATCTTTTGTTAA 160702 29 96.6 37 .........G................... TTAGAATTTTTCAAACTATTTTCTAAATCATTGTATT 160636 29 89.7 0 ................A.....CG..... | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.0 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : TGTTAAATAATGATACAATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTATAAGTTCTATATTGATAAAAAAATGTATTTAGAAGCAAGTTCGTTATTTGTAAATGTATCTGTAAAAAGATATAATTATAATAAAAAGATGTTTTATGAATATGAAGATATAATTGTTACAAGTTATAATTACAATGATAAGTTAGGTCTAATATTTGATTAGATTTTAATTAAATAGTTTGTTGTGAAGAGGGTTATAGTAGAAGTAATAAATAACCAAAGTATTTTATTGGAAGTTTATTATAATTTATATCTATTGCAAGTTTTATATGCTATAATAAAATAATTTTGCAGTGAGCGAAAAATATGTATGAATGGCTGTAAACTAGTGATGACAAAGCTTACAACTCTGTTTTTGTTTTTAGCAAAAAACACTACTGGTGGCTCACTGCAAATTACTTATTTTAAGAACACTACAAGTGTTGGAATTACTGTAGTTTTATTTGGG # Right flank : TTACCTATTCATTAAAAAGCTTAACTAAGAATTTGATTTATATTATTGAAGTATCAATAATTTTGGAAAGTAGAAATTTATACCCCAATAATACCCCAACTACAAAAATAAACAATGAAAAACATTGAAAAAAATTAGTCTAATATCATAACTAAATAGCCATATATCTACATTTACAAAAATCAACAAAACAATCAAAAAACCACTTATAGACTCCCCTCGTCTCCACCATTGAAATCCACGAATACCTATATCCAATTGGATATAGGTATTTTTATACATTTTTAATTTAAATATTATTGATAAATACATTTAAAAAGTGTTAACCTAAAGTGAAGAATCTAAATAAAAATACAATATTAGGAGAGGTTATCATTACAATAGCAGCTTGTGATGATGAAAAAGAAATACAAATCGTAATAAAAAATCAAGTTGATAATATATTAAAAAATAAAAACAAAGAATATCGAATTAAAAAAATATAGCTCAAAAGAAGAACC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //