Array 1 109016-107887 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_MXLY01000002.1 Salmonella enterica strain BCW_1819 NODE_2_length_350492_cov_3.79764, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                  	Insertion/Deletion
==========	======	======	======	=============================	=================================	==================
    109015	    29	 100.0	    32	.............................	TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 	
    108954	    29	 100.0	    32	.............................	GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 	
    108893	    29	 100.0	    32	.............................	GATGCTAACCACTATTTCATCCGCCTCGACGA 	
    108832	    29	 100.0	    32	.............................	GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 	
    108771	    29	 100.0	    32	.............................	CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 	
    108710	    29	 100.0	    32	.............................	CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 	
    108649	    29	 100.0	    32	.............................	ATTGATCCAATTAACGTAGCTGCAATGTTTGT 	
    108588	    29	 100.0	    32	.............................	GCCGCGCATGACATCGAAAAAATGTGGGAAAA 	
    108527	    29	 100.0	    32	.............................	GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 	
    108466	    29	 100.0	    32	.............................	TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 	
    108405	    29	 100.0	    32	.............................	TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 	
    108344	    29	 100.0	    32	.............................	CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 	
    108283	    29	 100.0	    33	.............................	GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC	
    108221	    29	 100.0	    32	.............................	TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 	
    108160	    29	 100.0	    32	.............................	TTACTGAAACGGATAAAAAATAATCAGGGGGG 	
    108099	    29	 100.0	    32	.............................	GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 	
    108038	    29	 100.0	    32	.............................	CGCAACTATCCATGCAAATATTTCCATTGCTA 	
    107977	    29	 100.0	    32	.............................	GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 	
    107916	    29	  96.6	     0	............T................	|                                	A [107889]
==========	======	======	======	=============================	=================================	==================
        19	    29	  99.8	    32	GTGTTCCCCGCGCCAGCGGGGATAAACCG	                                 	       

# Left flank :   GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT
# Right flank :  TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
//