Array 1 58802-58952 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FYQZ01000010.1 Streptococcus pneumoniae strain UoS3264, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                	Spacer_Sequence              	Insertion/Deletion
==========	======	======	======	===============================	=============================	==================
     58802	    31	  93.5	    29	..................G.......T....	AGCCATCCTGTTACCATAGCACCATTGCT	
     58862	    31	 100.0	    29	...............................	AGCCATCCTGTCGCCATATCACCATTAGC	
     58922	    31	  96.8	     0	...G...........................	|                            	
==========	======	======	======	===============================	=============================	==================
         3	    31	  96.8	    30	GTTTAGGTAGTACCATGAACCATTGTATTGG	                             	       

# Left flank :   ACTCCGTGGAGCCATTTCGCAAGCTAGCACCCTAGCAGAGATTGAAGCCCTCTTGCAATTGGAGAAGGCTTAATAGTTTAAAACCCGTAACTCTCTTAAAGAGTCTCTTGAATGCCGCCATTCTTTCCTCATCAAAAAAACTCCGTAGTCTCTAGCGCTATAAATCCGGCTAGAGATTACAGAGTTATTTTTTAATCTAAACTTCCTACAAGGGTATATTATCTACTGAAAGGATATGGTATTTGTAGGGAATACTTTAAAGAGTTCTTACAGGAAGTCAGTATTAACTAGTTATATTAAGTTTAGTTTACCCATTCACCATTGGCATTGACTCTATAGCTATCTACAGTTGTGTTGACTGCAAGGGCACCTGAGCCATTGACATAGTACCATTTATCTGATACTTTGAACCATTGGCTTGCTTTCATAGCACCTGATGCTTCAAGATAGTACCAGGTATCTCCATCTTTCACCCAATCTGTTGCCATTGAACCGTTAGC
# Right flank :  A

# Questionable array : NO	 Score: 2.51
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTAGGTAGTACCATGAACCATTGTATTGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:61.29%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  F [-1.00,-0.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [56.7-1.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.64,0.41   Confidence: LOW] 

# Array family : NA
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