Array 1 26894-29147 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGOL01000002.1 Legionella pneumophila strain NCTC12000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 26894 28 100.0 32 ............................ ATTTACACGCCAGAGAAATTATATAAAGTCAC 26954 28 100.0 32 ............................ TATTCAGAAGAAAGAACTTACGAAATTATTGG 27014 28 100.0 32 ............................ ACATCTCTTTAAGATCAAGAACAGTGTCCCAT 27074 28 100.0 32 ............................ ATTCGCTAAATTTAAAAACATATAAGACATAT 27134 28 100.0 32 ............................ TATATAATCCTATTACAGTAGCTTTATATGTA 27194 28 100.0 32 ............................ TAGATAATTACCTCTCTCAACTTGCTGTCTTT 27254 28 100.0 33 ............................ AAAAAACTTTCATTTGTTAGATTACGCATCTCA 27315 28 100.0 32 ............................ ATTATCTGTTACTGGATTTTTGAATATCTCTA 27375 28 100.0 32 ............................ TCATTCAGATGTAGCCTCAGCTTTAATAAATA 27435 28 100.0 32 ............................ GTCATCTTGAATAGACATTTTAACAGTATGTA 27495 28 100.0 33 ............................ TAAAAAATAATAAAGTTTCCATTTTACTTGACT 27556 28 100.0 33 ............................ GCACATAGTGAGAACATGGAAATATTTAATATG 27617 28 100.0 32 ............................ ATCGTATTGTGTCTCCCAATAAGTAACTTTTT 27677 28 100.0 34 ............................ TGACATATAGATTTCGCAGCATCAGCATAACTTT 27739 28 100.0 32 ............................ TAACACTTTAACCATTCTTTCCCACGCATCTG 27799 28 100.0 32 ............................ ACTTCCTGCTTAGGTCGAGCAAAAAAGTTTTG 27859 28 100.0 32 ............................ CCACAGGTATTGTTTCAATTGTATCGGACACG 27919 28 100.0 32 ............................ TTGCGAATAAGATGCATCATAAAACTTGCCTG 27979 28 100.0 32 ............................ AAATCCTCACTTTTCAATTTCTTATTTAATAA 28039 28 100.0 32 ............................ TGAAACTCACCATTTTTTAATAAAGGTTGGTT 28099 28 100.0 32 ............................ TAAAAAGCATGTTTTGTTAAAATGAGGAGATA 28159 28 100.0 32 ............................ ATTTGCATAACCAGTATCCGCAGGACTAGTCA 28219 28 100.0 33 ............................ CGATTGGGTAAAAGAAGTACCAGAAGGCTATCA 28280 28 100.0 33 ............................ ATTGCAGCCAAATCAAATTTATTATCGTGAGCC 28341 28 100.0 32 ............................ GCATGGGCACCGAAAGGAACAGCAGACATTAC 28401 28 100.0 32 ............................ TATAAGAATTACTGCTTTAGCCCAGCTTATTG 28461 28 100.0 32 ............................ TAAAAGATTTTTATGTGGTAACTGTCATTAAA 28521 28 100.0 32 ............................ GATAATGGGTTTGCTCGAAAAGAAGATAATGC 28581 28 100.0 32 ............................ GGAAAATTGTTCCAGCCTCTTCGTTTCTAAAA 28641 28 100.0 31 ............................ GTTACCGCAGCACCTAAATTGAATCTTGTTT 28700 28 100.0 32 ............................ TACGCAGGTTGCTTCTTTGGTTCATAATAGTC 28760 28 100.0 32 ............................ TAAAGTAGCTGCCAGCATAGGATTAATACCCG 28820 28 100.0 32 ............................ TGATGATTCTACGGATTATTTAGTTCCCACGA 28880 28 100.0 32 ............................ TATTACTGAGGCGGGGAAAAGATAATGGCAAA 28940 28 100.0 32 ............................ TATCGCGTTTATTATGTGCACTTTTTCAAACT 29000 28 100.0 32 ............................ TAACGTAGACACACTAATAAAAGCAGGTAAAA 29060 28 100.0 32 ............................ AGATCCGGGCGGAGAAAAAGGAGCTACTAAAC 29120 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 38 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTACGGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : AATTCTCAGAAATAAATAAATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 192170-197728 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGOL01000001.1 Legionella pneumophila strain NCTC12000, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 192170 28 100.0 32 ............................ ATTTACACGCCAGAGAAATTATATAAAGTCAC 192230 28 100.0 32 ............................ TATTCAGAAGAAAGAACTTACGAAATTATTGG 192290 28 100.0 32 ............................ ACATCTCTTTAAGATCAAGAACAGTGTCCCAT 192350 28 100.0 32 ............................ ATTCGCTAAATTTAAAAACATATAAGACATAT 192410 28 100.0 32 ............................ TATATAATCCTATTACAGTAGCTTTATATGTA 192470 28 100.0 32 ............................ TAGATAATTACCTCTCTCAACTTGCTGTCTTT 192530 28 100.0 32 ............................ AAAAACTTTCATTTGTTAGATTACGCATCTCA 192590 28 100.0 32 ............................ ATTATCTGTTACTGGATTTTTGAATATCTCTA 192650 28 100.0 32 ............................ TCATTCAGATGTAGCCTCAGCTTTAATAAATA 192710 28 100.0 32 ............................ GTCATCTTGAATAGACATTTTAACAGTATGTA 192770 28 100.0 32 ............................ TAAAAATAATAAAGTTTCCATTTTACTTGACT 192830 28 100.0 33 ............................ GCACATAGTGAGAACATGGAAATATTTAATATG 192891 28 100.0 32 ............................ ATCGTATTGTGTCTCCCAATAAGTAACTTTTT 192951 28 100.0 34 ............................ TGACATATAGATTTCGCAGCATCAGCATAACTTT 193013 28 100.0 32 ............................ TAACACTTTAACCATTCTTTCCCACGCATCTG 193073 28 100.0 32 ............................ ACTTCCTGCTTAGGTCGAGCAAAAAAGTTTTG 193133 28 100.0 32 ............................ CCACAGGTATTGTTTCAATTGTATCGGACACG 193193 28 100.0 32 ............................ TTGCGAATAAGATGCATCATAAAACTTGCCTG 193253 28 100.0 32 ............................ AAATCCTCACTTTTCAATTTCTTATTTAATAA 193313 28 100.0 32 ............................ TGAAACTCACCATTTTTTAATAAAGGTTGGTT 193373 28 100.0 32 ............................ TAAAAAGCATGTTTTGTTAAAATGAGGAGATA 193433 28 100.0 32 ............................ ATTTGCATAACCAGTATCCGCAGGACTAGTCA 193493 28 100.0 33 ............................ CGATTGGGTAAAAGAAGTACCAGAAGGCTATCA 193554 28 100.0 32 ............................ TTGCAGCCAAATCAAATTTATTATCGTGAGCC 193614 28 100.0 32 ............................ GCATGGGCACCGAAAGGAACAGCAGACATTAC 193674 28 100.0 32 ............................ TATAAGAATTACTGCTTTAGCCCAGCTTATTG 193734 28 100.0 32 ............................ TAAAAGATTTTTATGTGGTAACTGTCATTAAA 193794 28 100.0 32 ............................ GATAATGGGTTTGCTCGAAAAGAAGATAATGC 193854 28 100.0 32 ............................ GGAAAATTGTTCCAGCCTCTTCGTTTCTAAAA 193914 28 100.0 32 ............................ GTTACCGCAGCACCTAAATTGAATTCTTGTTT 193974 28 100.0 32 ............................ TACGCAGGTTGCTTCTTTGGTTCATAATAGTC 194034 28 100.0 32 ............................ TAAAGTAGCTGCCAGCATAGGATTAATACCCG 194094 28 100.0 32 ............................ TGATGATTCTACGGATTATTTAGTTCCCACGA 194154 28 100.0 32 ............................ TATTACTGAGGCGGGGAAAAGATAATGGCAAA 194214 28 100.0 32 ............................ TATCGCGTTTATTATGTGCACTTTTTCAAACT 194274 28 100.0 32 ............................ TAACGTAGACACACTAATAAAAGCAGGTAAAA 194334 28 100.0 32 ............................ AGATCCGGGCGGAGAAAAAGGAGCTACTAAAC 194394 28 100.0 32 ............................ AATTCTCAGAAATAAATAAATGTTTATTTATA 194454 28 100.0 33 ............................ GGTAGACACTGGCCTTTTTAAATCCAATTGGGT 194515 28 100.0 32 ............................ ATTAAAAGCCTTGCTGCTGCATGTAGTCTATG 194575 28 100.0 32 ............................ AAGAAACCGGGGAAGTGAACGACGCATATCGC 194635 28 100.0 32 ............................ TGCTGAATTGCGCGTGAAATTCTTTCTGATAA 194695 28 100.0 32 ............................ AATCCTCAGCCCAATGATTTTCAGCATCAATT 194755 28 100.0 32 ............................ AATCACAAGTTTACGCCCACCTAAAGTTTTTA 194815 28 100.0 32 ............................ TATGACCTCCAATCTTCTTTCATGGTCATTAT 194875 28 100.0 32 ............................ TTATGATACGCAGGGCAATATATTGCGTAGAG 194935 28 100.0 32 ............................ TTGGGAAAATTCCCATATTGCTTTTGCACCAT 194995 28 100.0 32 ............................ AGCGTGACAAATTAATCAATAAGTACAATAAT 195055 28 100.0 32 ............................ TTGAAGAGTACATTGGATATTCAATTAGTGCT 195115 28 100.0 32 ............................ AATATGGATAAGGCTTAAATGGTCTGGTGCCC 195175 28 100.0 32 ............................ TTAGGGGATTGTATCGCCCCTGGCGACGGATA 195235 28 100.0 32 ............................ ATCATACTTCTTTTATCAACTTTTTGTGTTGC 195295 28 100.0 33 ............................ ATTATGGATGCTGTTGCAAAAGGCGAGCTCACG 195356 28 100.0 32 ............................ GCCTAAAAGCCGAGGCGGACGTGAATTTTTAT 195416 28 100.0 32 ............................ AATTAATGTTAATCCTGTACCTCAGACTAGTT 195476 28 100.0 32 ............................ AATTATCCCAAACAAGACGATACGGAACAGCA 195536 28 100.0 32 ............................ GCTTGCGCCATGCGCTTAACTATTGCCCTCTC 195596 28 100.0 32 ............................ ATACGCACAGCTTAATGAGTGTTATTGGCGCG 195656 28 100.0 32 ............................ TACAATCTTGTTTAATGATGAATTAGTCAATG 195716 28 100.0 32 ............................ TCTATCGTTGGCCTATGTCTTCCGTTAATCAT 195776 28 100.0 33 ............................ TTACAACATCGGCCGCCGCGACGGGAACAGTTC 195837 28 100.0 32 ............................ TATGAAAACGAACGACGTGAAACAGCGTAGGA 195897 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 195957 28 100.0 32 ............................ AATAGAGACAGCCAAAAAGAACTGAAATTTGA 196017 28 100.0 33 ............................ AATACGGCGAAATAGACGAAAGTATAGACTTGA 196078 28 100.0 32 ............................ GTCTTCGTGTGTAACCTCGTCTTTTTCGTCCT 196138 28 100.0 32 ............................ CTATGAAGACGGTCTGCACGGAGAACTCGTTA 196198 28 100.0 32 ............................ TGTAGCGGAATCAACGCCGTACGCCTCTGGTA 196258 28 100.0 32 ............................ GATCAATCAGATAATCCACAAGACTACATTCG 196318 28 100.0 32 ............................ TACGCCTCCGCTTGACGACTTTAAGCCCAAGG 196378 28 96.4 32 ....................T....... TTATGTGCAAAAGGGCGGTAAGGCATGGCAAT 196438 28 100.0 32 ............................ GCAACAAAAATGGCGCTAGAGGGCAACGAAAA 196498 28 100.0 32 ............................ TATCGTCAACAGAGTCAAAGTATCGCCAGCAG 196558 28 100.0 32 ............................ ACTTACCCCTCCAAGGGAGGTGGTGCGGACTC 196618 28 100.0 32 ............................ AGCGCGTAAAAATCCTATCGAGAGGTCAAAAG 196678 28 100.0 32 ............................ GATAACTGGCAAGACACCGCTTTTGCGTGGCG 196738 28 100.0 32 ............................ TTACTCCCAGCTCAATGAGTGCTACTGGAGGG 196798 28 100.0 32 ............................ GCTCTTCGATCGTCGGCCTATGTCTTCCGTTG 196858 28 100.0 32 ............................ TTTGCAGCTCGGACATCTAATCATTTCCGTCG 196918 28 100.0 32 ............................ TGTGCTAAAAGTTCCGTTTGCTGTTGCTTTGC 196978 28 100.0 32 ............................ TACCAAGGTATTGCTGAAGCAATGGCCACTCA 197038 28 100.0 32 ............................ TTTTTCTCCGGCGGAATCTGGATCAAGCCATA 197098 28 100.0 32 ............................ GAACTTTCTGCTAGCAAGTCGAGCGATATAGA 197158 28 100.0 32 ............................ TCACGGTCTATTGTGTCGCCCTCAATTTGTCA 197218 28 100.0 32 ............................ TATGTTCAGAACCAACTCACGAATATCTCTCT 197278 28 100.0 32 ............................ AACGGCTTGAAATAATCCTTGGGCATGCTCGG 197338 28 100.0 32 ............................ TCTTCTTGCTCTTCAACAGCTTGCTTAGTCTC 197398 28 100.0 33 ............................ ACTGATTTAACAGCACAGATGGAAGCATTGAAA 197459 28 100.0 32 ............................ TCTCTGTAGTTTTGTTCAAAAACAGGGTATGT 197519 28 100.0 32 ............................ AATACATCACCAATTTGAATATCTCTAATCGT 197579 28 100.0 34 ............................ ATTTAGACGAATTTGTCGCGGCCGATTTAAGTAT 197641 28 100.0 32 ............................ AAGTAAATCCAGACCAGATATACATTCTTATC 197701 28 67.9 0 .............T......TGGGTTGG | ========== ====== ====== ====== ============================ ================================== ================== 93 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTACGGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : GTATTGGTTAAGTCGTATAAGAGGAGTTAAATCGGTATAATTATCCGAAGAACTGGGATGGAAACTCATTAAAGAACTAATCCCTGATATTAAATCTAAAACGGCACATTATGAGCATGCGCTATTAACCAAAGGGCATGCAAGACCCTGTAGGGTAGTTACAACTTATCGTCAGCCCAAAGGGAGAAAAGTAAAGACATCACGAGGAAAAATACCTCAACATTATCCAATGGAAGTTATAGTCAAGCGAATAAGGAGCCTTGGATTTTAGCTACTAATTTACCCTTGGATGTAGGGCCTGTTGATATTATCAATCTCTATTTTAAAAAAATGCAAATAGAAGAATCATTTAGAGACGTTAAAAGTCATCAATTCGGACTGGCGGGGCGGTATCTGCGTACTCATTCAGTTAATAGATGGGGCGTTAAAATGCTTCTTGCTGCTATTGTGGAAATTACTTATTGGGTTATTGGAGTGATTGCCCATAGTCAAAATAAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //