Array 1 88199-88439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCNN010000006.1 Eggerthella lenta strain DFI.2.80 EOGFEPKJ_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 88199 34 94.1 35 ......T................G.......... TCGATTGGCTCAAGGCGGCAGACCCGAAGCTTGAA 88268 34 91.2 34 .........C..................C...G. CTCTACGGGATCGAGCCGGTCAAGGCGTCCGGCG 88336 34 100.0 36 .................................. TGGTATCGAAGTCACTGCGCCACAGCCATGCCGACG 88406 34 88.2 0 ..............A.A..T...G.......... | ========== ====== ====== ====== ================================== ==================================== ================== 4 34 93.4 35 GTCGCACCCTCATGCAGGGCGCGTGGATTGAAAT # Left flank : GACTGCTATATTCTTGAGTGAGGATAGCCATATCGGCCTGATCATACCAGGATTCCGCGGCGGCCATGTGCGCGCTGCTTGCCGTATCGGGCGGCTTGTCATCGGCCGAATTTGCACAAAAAGCGTCGACGTTCGATGTTGTGAACGCTCGCGCTTCTTCTTGCCCGCTTGTTCGTCGGCGTTTTCCCTGCACGTTGATTGCGGGGGAGGCTTTGGCTGGGGCGATGGTCGAGCAAAGCATCCAACGTCGGCGATTTTTGTTCAGGAGACGCCCTTTTCGTTGCAGTCATGATGACGGCAGGGCCTTCTTTGCGAAAAGCGGCGGCGGAGGATGCTGCAAATTCGACTGAGTGCGAATCAAAGGCGAACATGATCGATGCGGGAGGTTCGCACCCGATGCGGGATCGATTCGATCGTCGAGGTTGAGACAGTGCGGTTGGCTGCTTGCACGGAATGCAGGATATTGTGCTCGATTCCTTCTCTATGCCATGATCGTTGCG # Right flank : TCGGTTTCGGGCCACTCCGCTCCGCCCCTTCCGCTCTTCGTGTGCAGCAAAAACGAGGTTTTGGCAGTCTTGACCGCTTGGGACGACGTGTTTTCGAGGTCGGGTGCCGTGTTTCCGGGGCGCGGTCGAGTGTCATCTGGGGTTTTGCCGCGGTGCCGTCTCGGGTGCGAGGACTCCTCGTGCCAAAACCTCGTTTTTGCTGCACATCGCCTTGTGAAAACGTGCGGCGGGGCATTTTTCAGGCAGCTGTGGGGGCGGGTTGGGCGCGAAACGGCTCCCATGACAATCGCAAGGCGGCTTCGACCTGCTTTGACGCGCCTTATCGCCTCATGCGGTCGTATGATCCCAGGTGACGAAATCCACGTGCGACCGTCGATACCCGACTCGACCGCCGAAACTGTCATAGGAGCCGTTTCGCGTCCAACCCGCCAACCGCCCGCCAACCCGCCAACCCGTCGACGCAGCGCCTCCCCGCCATCCCTCGCGCAGCTGCGACAGCG # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.67, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCATGCAGGGCGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCATGCAGGGCGCGGGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.10,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 127560-123580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCNN010000005.1 Eggerthella lenta strain DFI.2.80 EOGFEPKJ_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 127559 33 100.0 33 ................................. ATGGACGCTCGGCGAACGATTTCAACCTACACG 127493 33 100.0 35 ................................. CGGGCGTTCCGCAGAATTCGAGGCGGAACTGCTGG 127425 33 100.0 35 ................................. GCCTCCTTCCAACTCGTCTACCTCGTTCTGCTCGA 127357 33 100.0 34 ................................. ATCACCATATGTGCATTATGCCGCAAATCAACAG 127290 33 100.0 33 ................................. CGGCAAGGTCGACCCGGACTTTCACGAGTTCAC 127224 33 100.0 34 ................................. CATGAAGCGCGCCCCGTGATGTTCGGCGTTTTCA 127157 33 100.0 34 ................................. GAGGAAGAGGACGCGAAGCTCGAGATAGACTACA 127090 33 100.0 34 ................................. ATGAAAGCGCTGTCCGACAACGGCCAGCAGGACG 127023 33 100.0 34 ................................. AACAGCAACGAAAGCGCTTGGTTCATCACTCGCA 126956 33 100.0 33 ................................. CGGCATTATAGCTTTAGGCTGTCGTAGCGGGTA 126890 33 100.0 34 ................................. CTTCACCACGATGTCCTCATGCCCGTCCTCCCAG 126823 33 100.0 34 ................................. TCGAAGGAATGGCGAAGGGACAATCCGGGATTCG 126756 33 100.0 33 ................................. CCGTCACCGACGAGGTGGGAAGCGACACCCTCG 126690 33 100.0 34 ................................. TTGTTGTCGCCGTTCCTCGTGGCCGCTACCCCGG 126623 33 100.0 33 ................................. GGTCGCACGTTCAAGGGCCACGCCGCGTCTGCG 126557 33 100.0 33 ................................. CCGCGCTTCGAGCCGCTCAACCTCTGGTTCGAC 126491 33 100.0 34 ................................. TGCCCCCGGCTGGCAGCCTACGGCTACATGATGG 126424 33 100.0 32 ................................. TCGCCGAACCTCATCACCCACACCCCGCCCGA 126359 33 100.0 34 ................................. CTCGTAGACGTACAGCCTGCGTCCTCCGAGGTCG 126292 33 100.0 35 ................................. TCGTCGCTCGCCTTGATGATATCGGCCCCGGTGCC 126224 33 100.0 33 ................................. GAGTCTGCCGTACTTGATGGCCATGTAGCTCTT 126158 33 100.0 33 ................................. TTGCTCGCTTTGTATGGCTTGCAACTCGGTTTC 126092 33 100.0 33 ................................. GAAACCTGCGCAAGCGGCTTGACCGAAACCGTC 126026 33 100.0 36 ................................. CAGCGGCGCTGGCATGGATTATTGCGACTTGGGCAC 125957 33 100.0 33 ................................. GCGTATCAGCGATGATTGGCGGCAGTTCGTGAA 125891 33 100.0 33 ................................. TGCGATGACCTTGCACTTGCTCTCGGTGTCGAA 125825 33 100.0 33 ................................. TAAGCCCCTAAAACACAACATCTTGTGTGTAGC 125759 33 100.0 33 ................................. AATCGAAGGAAGGAACTACCGGCGGGAAACTCA 125693 33 100.0 34 ................................. TTGCCGTCCACGACGGCGGGGCAATCGCAGCAGT 125626 33 100.0 36 ................................. GTTTGCGTCAAACGTTTTTACAGCCTCAACGAGCGC 125557 33 100.0 35 ................................. CCGCCGCCCTCGACCACCAGCCGCACCGCCGTCGC 125489 33 100.0 34 ................................. TCGCATTGCAATGCAACCCCTCGCGCAAGCGCGC 125422 33 100.0 35 ................................. GCCTTGTCCACGTGCATCTGGCGGTTGTCGTACAT 125354 33 100.0 33 ................................. CGTGTTGGGCATATAGGGGGCTTCGCCGGCGAA 125288 33 100.0 35 ................................. TTCATCTTCGACGAGGTAAACGTGTATTGTAGCAG 125220 33 100.0 32 ................................. CACGCCGCCCAGGTCGAGTACGAGAACGCGCG 125155 33 100.0 35 ................................. ACCACTACATTACGAAGTACCGCGAGAACGGGGTA 125087 33 100.0 35 ................................. TTCCGTGTTTTAGTGTCCCTCCGGCAGAGGTGCGC 125019 33 100.0 33 ................................. CGTCACTATCACGGTTTTGCCTCCCTACGTTAA 124953 33 100.0 34 ................................. GTGCCGGCAGCTCCCGCAGCAGCGGCCCCTGCGG 124886 33 100.0 33 ................................. AAGTGCCTTAGGCAAATCATCCGCTGGTGGGTC 124820 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 124754 33 100.0 35 ................................. ACGCACTCGTAGACGTCGGCCGGGGTGTAGCAGTC 124686 33 97.0 33 ...........T..................... GAGTATGTCTTCCTTGCTGCGGTAGTAATAACC 124620 33 100.0 33 ................................. GATCCGCTACGACAACGTAGGGGATCAGGCCGA 124554 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 124485 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 124418 33 100.0 33 ................................. CAGCCACCAGGCCCCGCCGGATTCCCCGGCGTG 124352 33 100.0 34 ................................. ATGGATATCTCTGTGCCGAGCGCGCCGTTGAGCT 124285 33 100.0 35 ................................. GCCTTGTCCACGTGCATCTGGCGGTTGTCGTACAG 124217 33 100.0 35 ................................. CGACTCGTAGGGCACGGCAGCGAAAACGACGCCTT 124149 33 100.0 33 ................................. CGTATCAGCCAAGCCGCCTCCTATGCCGTGGTA 124083 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 124015 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 123948 33 100.0 33 ................................. TGCTCAAACCATGCTTTTGGCTTTTCGGTCACG 123882 33 100.0 34 ................................. ATCGTGTGCGGGACGAACGACGACAAGCTGGACG 123815 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 123746 33 100.0 33 ................................. CTACGATGCCATGGCGTCCTATGCATTCACGGG 123680 33 97.0 36 ..........................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 123611 32 93.9 0 .................-..............C | ========== ====== ====== ====== ================================= ==================================== ================== 60 33 99.8 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GCGCGGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCAGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTATTGGCGCTATATGTTGATCGAGGCAGTAAATTTTGCGCATAATATTGCG # Right flank : TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACACGTCATCGTTCAGCTTGCGGGCGCGCGGGCTGAAGTCGCGAGCAGCTGTTGTGGTACGGCCGAGGCGTGGTCGGTCGTACCCCTCGCGGGCGCGCGGGTAGAAGCAGGGTATCTGGGTTGAAATCGAGCAGCGTTCCATAAGATGGAGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGCCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAAGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.20,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //