Array 1 557-109 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSTD01000090.1 Vibrio cholerae strain 2012Env-2 NODE_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 556 28 100.0 32 ............................ GGACTGCTGGGACTTTAAATGCCTTCATCCCG 496 28 100.0 32 ............................ AATGAATACTCTGTTTTCCAAATCCGAAGTTA 436 28 100.0 32 ............................ AGTTACTGAATACACACCGGACGAAATCTTCC 376 28 100.0 32 ............................ TAAGTCGGCGAAACCGCCACCTGCCGCACCGC 316 28 100.0 32 ............................ ATTCTCTGACAATGTTCTTCGTTAGTTTGCTG 256 28 100.0 32 ............................ TTGCAAGGCTTCGTTCTTACACGAATCAGCGT 196 28 100.0 32 ............................ TTTTCCTTTGAAAGTTAAACGAACATAAACAA 136 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 8 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TCAACCACGCACATAACAAACGCCTCAAGAGGGACTGTCAACGCGCGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTTTCTGTTGTTGTGTTTGGGTTTGGTGGTAGTGCGTTGCCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCCAGTAAAAAACAAAAGGTTATTTTGGGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : ATATTTATAACTTTGGCATTTGGGATCGGCCACTTAGTATCAAGTTTGAAGTGCAACGATCAGCGATAATATTCAACAAAACATTCCTCCGGTGTTTTAAAGCCCAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 135918-137684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSTD01000032.1 Vibrio cholerae strain 2012Env-2 NODE_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 135918 28 100.0 32 ............................ GCTTAGAACGGCGAGCAGCAAGCTTGCGTTTT 135978 28 100.0 32 ............................ TTTTACATTGGCCTGTAATGAGGTGCTGAACG 136038 28 100.0 32 ............................ GCAACGTCAGTTCCTCGGCCTAAGCCGAGACA 136098 28 100.0 32 ............................ TGCAGAAAAACAACTCGATGAGAACGGCGAGT 136158 28 100.0 32 ............................ ATGATTAGCGGCACCGCAGAGATTGGGGCGAC 136218 28 100.0 32 ............................ ATTCAGACCACGTTGAGCCGGGACTCTAGTCC 136278 28 100.0 32 ............................ AGAAATTAACCGGAATCCGTCAGCGTCTCGAT 136338 28 100.0 32 ............................ AAGTGGTTTATCATCCAACGCCAAGTGATGCA 136398 28 100.0 32 ............................ TCCCATTAAATTGCTATTTAGCTAGGTTGGTA 136458 28 100.0 32 ............................ TAGAAGAGGTTTCGACGCCTCACAACCGGAAT 136518 28 100.0 32 ............................ GTCAAGATAGATCACCCCCTTAATCAACAATG 136578 28 100.0 32 ............................ TATGTCTCGCAGCGACTCCCGACCTTGAGCGA 136638 28 100.0 32 ............................ TTAGATAAGCGCAGCAAGTGCTCTAGCTGTTC 136698 28 100.0 32 ............................ TCATCTGGAATCATGAAATCCTCATCAGCCAA 136758 28 100.0 32 ............................ TTTCAGAACCACATCAGAGATCATCTGTTTTG 136818 28 100.0 32 ............................ TTTTATTGGCTTGGTTCGGTCCTTACGAAAGC 136878 28 100.0 32 ............................ AATCATCAAGAACAAAGCCAAGAAATACCAGA 136938 28 100.0 32 ............................ TACCATCCACTTTAAACTGTTCTCCCGATACA 136998 28 100.0 32 ............................ TGAATCAAGTGGTGGTTGGACTATCGGAGCGT 137058 28 100.0 32 ............................ CTAATGGGAAACGGTGTGCGAATCGTTGTCGC 137118 28 96.4 32 ...........T................ ATTTGATTTGGATGTCTTCATCCTCTGGTGGG 137178 28 96.4 32 ...........T................ GACCATTTGCGGAACGGAAGGACCAAACAACT 137238 28 96.4 32 ...........T................ TGTTCTCTGCGTCTCTGTGTTTATGACCTAGA 137298 28 96.4 31 ...........T................ AAAACTTCATCAAGGAGTGAGGGCGTTTTTG 137357 28 96.4 32 ...........T................ CTCAGTGATTTTGATATTGATGGTGAAAAGCC 137417 28 96.4 32 ...........T................ GATCAAATCGCATTAGCTAAGCGCGGCGTGTT 137477 28 96.4 32 ...........T................ ATTTTGAAACGGAGGCACTGGTTTGTGTTCTT 137537 28 96.4 32 ...........T................ ATCAATGTGGCTCCTTTCTAGACTGACAACTG 137597 28 96.4 32 ...........T................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 137657 28 92.9 0 .........................TT. | ========== ====== ====== ====== ============================ ================================ ================== 30 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGTAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTACCCTAACAGCTTGTTGCAGCTTATTTTTATCGGTTTATTCTATTG # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //