Array 1 9570-5768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNV010000027.1 Microcoleus sp. FACHB-DQ6 contig27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 9569 36 100.0 37 .................................... CAACAAATGGGTAATCCTCTTCAACGGCAAGCATCGG 9496 36 100.0 38 .................................... TGGATAATCTCAGTACGGCTGCTCTCAAAATCAGATAG 9422 36 100.0 34 .................................... TCCTAAAGAGGATGCACAGCCTGCGATTTATAAT 9352 36 100.0 37 .................................... TTCTGGCCGCTCTAAGGGGTCGGGTATTGGTAAGTTG 9279 36 100.0 37 .................................... AAATAACTTTATTTTTACCTATGCACTGCTTAGGCTA 9206 36 100.0 34 .................................... TTTTGACACTCACTCAGAGAAATCGGCCGCTTAA 9136 36 100.0 34 .................................... CTTTGTGAGATGGAGGATGGATACTTTCAAAATG 9066 36 100.0 32 .................................... AAGGACGCAAGCTAAGGTTAAGAGTACAAAGT 8998 36 100.0 37 .................................... ACTTGAAGAAAATCCGCAGCTTTCGATCGAAGCCATG 8925 36 100.0 33 .................................... TAAGGCTTTGGCTTGAATCTCTCTACGAAGACG 8856 36 100.0 34 .................................... TCAATATATCTAATTAAAGAATTAATGCTTCTGT 8786 36 100.0 37 .................................... CCAGCAGCGCCAAAATTCCGTAAGTGTAGCGCTCTTT 8713 36 100.0 42 .................................... ACCTCGGTAGAATCCGCTCGCGGCCAGGCTGGGATATTTATA 8635 36 100.0 35 .................................... TCAATTAGCCTATCCAACTCTTCTATACCTATAAG 8564 36 100.0 35 .................................... TGGGTGAAGATTTTGGCGGCTGCTGACGTGTCCTG 8493 36 100.0 36 .................................... GAGGAGTGATAACAAAAGTGATTGCAGACTGATCGC 8421 36 100.0 36 .................................... CCGACGCAATAACATCCTGTTTGGGTAACTTACCCG 8349 36 100.0 37 .................................... ATATTAGATAGAACCCTTCATGATAGAAGAGAGCCAG 8276 36 100.0 34 .................................... GTGAAGTTTCGCCTTCTCTGCATCCAACAGAAGT 8206 36 100.0 38 .................................... AGATGGATCTCGTGAATTCTATGGAACGGCAGGATTGT 8132 36 100.0 39 .................................... ATATAGCTTCCAGTGCTTTTCGGCTTTCTTCCACATCAG 8057 36 100.0 36 .................................... AATCCCTAACGTTTTCTGGCGTAACTTTACAGAAGA 7985 36 100.0 37 .................................... CAAATGCTCTCACTTTCTACAAACGTAGACGCATTGA 7912 36 100.0 33 .................................... CCGACTACGACTTCCGCGATTTTGTAGTCAGTG 7843 36 100.0 39 .................................... TCGAATAACATCACTGGTAATTTGCTGCTCAGGTGTTGC 7768 36 100.0 36 .................................... CCCACGTCCTCGCACGTGCCTGACAACAGAAGATAG 7696 36 100.0 40 .................................... CCGATGAGCGATCGAACTTCTGCCGTAGACAACAGCCAGG 7620 36 100.0 35 .................................... TTCTCACTTTCTTGGTGTATCCTTACCCATGCCAG 7549 36 100.0 36 .................................... TTTCCCGCACCGGGTATCCCGTAAATTAAAACTGAG 7477 36 100.0 36 .................................... ATCGCCCGTCAATCCCCGCGCTATTGCCATATAAGG 7405 36 100.0 34 .................................... GCGCTGCTGCAATAGAAGCAGCCTCTAGAGTTTG 7335 36 100.0 39 .................................... AAAATCAAAAAGCGCGCCCGGTTGCGCTTCTTACAGAGG 7260 36 100.0 39 .................................... GAAGACTCAACAGTTAATTGCTCCAGATTTGCTTAAACG 7185 36 100.0 38 .................................... AGAACATTTCCAACTTTGAGCTGAATTCCTAAGCTCAG 7111 36 100.0 39 .................................... CTGTGGGTGCCGGGAATATGGCCAGACGGCTGGCAGAGG 7036 36 100.0 39 .................................... GAGGTAGTCTCCGAAACCAACAATTTCGCTCAAATTAAG 6961 36 100.0 32 .................................... GGAAGATTGGGCCCGCATTAGAAATCTTAGAG 6893 36 100.0 36 .................................... CTGCAGGACTTGCAGGACTTAGAGAGGTAACTTCGG 6821 36 100.0 40 .................................... TTCCGCCGTAACTGAGCATCGACAGCGAGGCGATCGCTCG 6745 36 100.0 36 .................................... AAATCTTCTCTCAAACAGTTTGAATCAGAAAAATTG 6673 36 100.0 36 .................................... ACTATCTGAAATTTCAAATAGTTCTCATCGAAATGG 6601 36 100.0 36 .................................... ACGCTCGATAGATATACCTTGTCGAGGAATTAGTAG 6529 36 100.0 35 .................................... TGTTTTTTACTCGTGCAGCTTTAAGCGCAGATAGG 6458 36 100.0 36 .................................... CTTTCTCAACAAAAAGCAACGCTTTACTCGATTTTG 6386 36 100.0 37 .................................... GAGTGGGTTCCCTTTGTCTAAGCCGTTGCGTGTAATG 6313 36 100.0 33 .................................... ACCTCAAAATCCTTTGCCGCCTATAGTGCAAAG 6244 36 100.0 35 .................................... TTGTTGGATTTTAGCGAGAAACTGGGAAAGAAGAG 6173 36 100.0 39 .................................... CCACTCGCAGAAGTAGTTAGGGCTTCGCTCCCAAAGTTG 6098 36 100.0 34 .................................... TGTAGCCACGGATTAAACCAGAATTTTTAGCGGG 6028 36 100.0 37 .................................... TGCGCCCAGGGCGATCGCTAGTCCAAACAGTTGTATG 5955 36 100.0 38 .................................... AAATTTGGCTCTAATTCGTACAAATAGACCGTGCTATG 5881 36 100.0 42 .................................... ATAATCATCAGCCAGCCATTCATACTGTTTGATGTAATCTGG 5803 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 53 36 100.0 36 CCGAAAACAACCTAAAACCCTATCAGGGATTGAAAC # Left flank : TCTGAAGACAAGCGCCGCACTAAGATTCACAAGATTCTCAAGTCTTATGGGGAATGGAAGCAGTATTCGGTGTTTCATTGCGAGGTGACGGATACTGAGTATGCCCGGATGCGCCAACGTCTGAGTAGGGTGATTAAGTCAGAAGAAGATAGCATCCTGTTTCACTATTTGTGCGCTTGCTGTCAGGGCAAGATCGAGCGGATTGGCGGCCGGGCACCGCTGGATACTACGATCTTTATGGTGTGATTTTGCGTCTGGCTGTAGGTGTTGAACGGAGGGGGTGAATTTTAATGACTGAAAGCTTTACTAGGACTGGGTTTGCAGTGGTTTGTACCTCATGCGGGTCAGACGCAACTGCTGAAAGCTTTACTGGGGGAGAGTTTGAGGTCTATTTGAATTTTGCCCCCTTGACAGGGCGATCGCCCAAACGGTATATTGATTGCAGTCAGACGCAACTGAACCTTGAAAACCTTATATTTCAAGCCTCCCAGACCCCGGCG # Right flank : CTCGCAGCTATCCATCTCCTTACTCATCTCTTTGGCTAGCAACAAGTTTACTTCCAACACTTGTCACAGCACAGGTGGTGCTCATCGATAATCTCACATTTGATAAAAGTGGTCGGATTCAGGAATTGATTCAAACAGCAGGGTGTAGACTATTATATTTACCGCCATACTCTCCAGAGTTTAACAAAATTGAACAAAGAAGAGTCTTGGCTAAAAAGTCAAGTTCGCAAACAGCTTGATGAGTTTGATTGCTTACATTTTGGCCACCCTTGGATGTCTTGCCTTGCGTCCTAACACGGGCGGTTGCTATATGTGATTTCCCAGATTATTCAGTTGATAAAACCTCAAAATTATGACCAATCAAACAACTTCTCCACTCCTACTCAGTCCCTTCAAAATCGGAGATTTACCCTTAAAAAATCGGGTACTCATGGCACCCCTAACGAGAGCCAGAGCCGGTGAAGCGCGGATGCCCAACGCCTTGATGGCAGAGTATTACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGAAAACAACCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 9145-12721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNV010000289.1 Microcoleus sp. FACHB-DQ6 contig289, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 9145 37 100.0 35 ..................................... GCTGTGGTAAAGTTTTTGGCGCAACCCTAGGGCTG 9217 37 100.0 34 ..................................... GTAATCACTAAAGGCAATTCATCTAAAAGAATTA 9288 37 100.0 37 ..................................... GGAATAATTCTGAGGACTTTGGTGAAGATGATGATGA 9362 37 100.0 37 ..................................... ATGCGGCGAAAACGCGCCGAGACTAACCGATGATTCA 9436 37 100.0 32 ..................................... AGGAAACTAATATTTCCTGATTCCCCCAACTG 9505 37 100.0 37 ..................................... TGCGATCGCCTTTTTTACCCTAAAATCCAGAATCTAA 9579 37 100.0 35 ..................................... CGCTTTTTCCTTAGCCAATTCCTTCAGACCGTCTG 9651 37 100.0 38 ..................................... CGCAGTTGCCGGGAATTGAAAACTCGGACTTGTGGAAC 9726 37 100.0 35 ..................................... AGAACAGGTATTGCCGGAATTGACAAACATATTAA 9798 37 100.0 36 ..................................... CAGTACCCATCATTCAGGGATGTCGCCACCGATGAC 9871 37 100.0 37 ..................................... AAGTGAGAATGCCAGTAAAAGCTAACCATCGTCTAAA 9945 37 100.0 35 ..................................... AGGTAAAGCTTCTCATCAACAAAATTCTTAGGAGG 10017 37 100.0 38 ..................................... ACGTTTCGGGCATAGCATCTATCCTCAAATGGGAATTA 10092 37 100.0 38 ..................................... GAGGAAAAAGTGGTGGTTGAGCCAGAGGCAAAACTTTA 10167 37 100.0 34 ..................................... CTATTCGACTATCGAGTAGGCAATTATGCACAGA 10238 37 100.0 35 ..................................... CTGGAGATGTCGCCAGAGGAAGTAACCCGATTGGT 10310 37 100.0 35 ..................................... GCGACGGTTTCCTGCTGCTACTACCGCATTAAAGG 10382 37 100.0 44 ..................................... GGCAAATGTAATTTTTGCAATCGGTATTGGTAGCCCAATCCAAG 10463 37 100.0 36 ..................................... TCACCCGCATTTCCACGTACTTTGTGAGATGGAGGA 10536 37 100.0 36 ..................................... AATCTGCATCCAATATTGTCTAGGGCGGCCAAAAAC 10609 37 100.0 36 ..................................... GCGAATTATGAATGTTAGAGATTTACTTGAAGTTAT 10682 37 100.0 39 ..................................... CCAACTAGCCGAGGTGCAATCTAAATTAACAGCAATTGA 10758 37 100.0 33 ..................................... TAAAATATATGTTGTACTAATCTTATACCTATT 10828 37 100.0 36 ..................................... CGCTCTCTGCTTTGTCAATGCCAAGTCCGAGCCGAG 10901 37 100.0 32 ..................................... CTGTTGAGAATGCCCGGTGGTGTCGTGTTAGG 10970 37 100.0 34 ..................................... CAGAAGTATACAAAAACCAATATTCAGAACCAGG 11041 37 100.0 32 ..................................... TGGAGATTATAATGGAATCCTTTTAAAAAGTA 11110 37 100.0 37 ..................................... TTAGTAGCAGATAAAATAACACCAGAAACACGCTTAC 11184 37 100.0 36 ..................................... TCCATAATACTATTATAACCGCATATATGCGGTAAT 11257 37 100.0 35 ..................................... CTATTCAGCGTACTCTCGATTTGCCGTTTGAAAAA 11329 37 100.0 34 ..................................... CCACCCCTCAGTCATTTCTAATAGAGCCTGACGA 11400 37 100.0 34 ..................................... ATTTTCTATCAGTCTGTCGCGCAGTTTTCAGAGT 11471 37 97.3 34 ..................G.................. TCATTATCTGATACAAAATAAACTGTATCACCGT 11542 37 100.0 37 ..................................... TCTATGGTTTCCCAATTCTTCGCAACCATCATATATT 11616 37 100.0 36 ..................................... TTCTAATTGGTTTTCGGCCATTAGTTTAGAAATACC 11689 37 100.0 34 ..................................... GCGGTCATTCCGCGAACACCATTTAGGACTTCCC 11760 37 100.0 36 ..................................... TTAAGTGAAAATCCTTGCAAAAAAGATGCACAAAAG 11833 37 100.0 43 ..................................... GTAAACAGCAATATCCAAAGAAATCTGAAGGATATCTTCGCGA 11913 37 100.0 34 ..................................... CTGTAGCCTTAACCAATGGAGCCGCAGTCATACG 11984 37 100.0 34 ..................................... ACTGATATTTGCGATCGACGCTCTTGGATTAGCG 12055 37 100.0 34 ..................................... GACAAGGTAGATATTCAGAAGATAGACTAAGAGA 12126 37 100.0 37 ..................................... CTTGCCCTAAATCTTGCTCAATAATAAGTCGGGCTAA 12200 37 100.0 37 ..................................... CAATCCCTAACTCATCATATTTTTCCGATAGGTTTTT 12274 37 100.0 37 ..................................... TACAGTGCCTATAATGTGTGCGTATTCTTTGTAAAGA 12348 37 100.0 35 ..................................... ATAATCCGCCAGCGACTCAGGAAAAGTCGGATCAA 12420 37 100.0 35 ..................................... TTTGCGTTCGCTGCATCCTGGGCAGCATCGCTAGC 12492 37 100.0 34 ..................................... TTCATCTGCAAAGGCTTGGACTAGATTGAAAAAG 12563 37 81.1 34 ...............TTT...G..T.A..C....... CCTGTATTGGAAGGCTTTCGCCTCGGACAATGTA A [12587] 12635 37 91.9 13 .CG..............T................... AAAGTCCAAGCGC Deletion [12685] 12685 36 81.1 0 .CT.C.......-....T........AA......... | T [12689] ========== ====== ====== ====== ===================================== ============================================ ================== 50 37 99.0 35 GTCGGAAAAACCATAAAACCCTATCAGGGATTGAAAC # Left flank : CGGGCTTGAAGGGTGGGACTTTGGGGGCGATTTGGGGCAGTTTTTTGGGGACTTTTGCGGGTGCTGTGTTGGGGGCGTTGGTGTCTGCGATGTTTCCGGCTGTTAGCGCTGGGGTGCCGGTGCAGTTGGGGCCTGTGGCGGGGGCGATCGTGGGGGCTGGTTTGGGGGCGATTTGGGGCGTGGTTTCGGGTACTGTTTGGGGGGCTTTGGGTAAGTGGTGATCGGGTTGATGTCTGTTTTTGGGTGGAAAATGCGTCTATGCGTAGGTGTAAAAATCGAGGTGTTAAATTGGGGGGCTATAATGTAGATGCTGTAAGGGTTAGAGGCACTTCAAGCAATAAAATGGGAGACGCAATCGCTGAAATCTATGCGGGACAAGGGTTTGAGGGCTGTCTGAAAAGTTGGGTATTGACAAGTCGAAGGCTGAAATGGTACTTTTGTTTTATGCAGACGCAAATGAACCTTGAAAACCAAATACAGCAAAGCTTCTGGAACGGGCT # Right flank : CTAAATCGGGTATGATATCATTTGCGGTTGCACTCAGACATGACTGTTGACTGTGACTCGAAAAACTGAAAATTACGCTGATATTTGTTGGCAGCTTGACTCGACTTTACCAGGACGGACTATGAAGCGCGGATTTGATATGATTCCCGCGCACCCGAAATTGAGATGAAGCAGCAAAATACAAATTAAGCCACAATAAACCTAAATCCCATCTTCACTTGAGATGACAATGACAATTCGGCTTTTCAATCAAAGACTCAACCAAAGCATTCAAAGCAACCGCCGCCAACAACCCGCCGCCAAAAGTTCCCAGAGTCGTAATATAAGCAACGCCCGATCGCACTAACCGCCGTTTCGCCACCGGAGAATGACTAAAACCGATCGGCATACCAATTACCAAAGCCGGTTGCAGTTGCCCGCTCTCGATCGCCTCGCAAACCGCCATCAGCACAGACGGCGCATATCCTATCACCAATATACATCCTTTTTCCAGTTTCAAC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAAAACCATAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 19237-17121 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNV010000374.1 Microcoleus sp. FACHB-DQ6 contig374, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================================================================================= ================== 19236 32 100.0 40 ................................ TAGTGGGGGCAGTTTTTGAATGAAAAGCTGGTATTCTACT 19164 32 100.0 41 ................................ ACTTCTTCCCGCAGTCGCTGCAACACCTTATATACACTACT 19091 32 100.0 113 ................................ TGCGATCGAACTGCTTTGATGTTGGAAGGAGGTTTTAAGGATTTAGTCGGGCCAGGTGCTTGCAAAAATGGTTTGGAGGGTTTATTCTTTAATGGGTTGGGCGATCGGTCTGA 18946 32 100.0 39 ................................ TCTCAGGCTGAGATTACAGGCAACACTGCACAGAACTGA 18875 32 100.0 41 ................................ GACTGGAGTCAGTCTCGTCACCGGCCCGATGTCAGGTCTGA 18802 32 100.0 42 ................................ TCGATTCAAGAAGCGAACCTGTGGGCTTTAGAACAAAGCTGA 18728 32 100.0 39 ................................ AAAACCCAACTCGAAGAAATCAAACCTGGTGAAACCTGA 18657 32 100.0 43 ................................ ATCATTGAATTGCATCACAACGACGGCAGGACTGAATTTCTGA 18582 32 100.0 39 ................................ GGTGCTAAGACTTTTATACATGAAGTCGCACAATCCTGA 18511 32 100.0 39 ................................ TATTTGACTCCCGCTGAAGTCCAGCAGCAGTTAATCTGA 18440 32 96.9 39 .........G...................... AAGTTAATCATGGTTTTTGTTTCCTGGTTGTAGTGCTGA 18369 32 96.9 40 .........G...................... GAATCACAACCGTTGGAAGTGCGAGCGGCTGAGATCCTGA 18297 32 96.9 40 .........G...................... TTCCAAGCGTACTTTATCCCGCGAACTGTGACGTATCTGA 18225 32 96.9 39 .........G...................... GGTATTACCGCAATTATTGGTCAGCAAGGCAGAGGCTGA 18154 32 100.0 40 ................................ TAATCCTGTGCCTGGATAGGTTCGTTGCACCTAATTCTGA 18082 32 96.9 40 ..........A..................... CCAAAAGGATTGGTTTTTGTTGGCGAAAATACAGTCCTGA 18010 32 100.0 39 ................................ TTCAATCTCGCGGCGTAGAGCCAGCAACCGGGGTTCTGA 17939 32 100.0 39 ................................ GTCTTCATCGTGCATTTTCATATCGCTTTCACCTCCTGA 17868 32 100.0 41 ................................ TTGCAAGTAATTCAAGCAACTCGGTTCGTTACAGGTGCTGA 17795 32 100.0 37 ................................ TAGCCATATTGCACCCCTAAATCTTCCAGTGCTCTGA 17726 32 100.0 38 ................................ CCAGTAATGAACAAATTAAGAAGCGTTTTAGTAGCTGA 17656 32 100.0 40 ................................ GTTGAAACTTGGGGTGAAGAAGGACAAAAACCTGGGCTGA 17584 32 100.0 39 ................................ TGTCCATAAGCCGATTCTGGTTCAGCAAACCCCAACTGA 17513 32 100.0 42 ................................ TGCGCCGAAAGTTCGATTCAAGTAAGTTACGCACTGTACTGA 17439 32 100.0 39 ................................ TTCATCCCTTTGGTTTCTCCGGCGAGGAAGCAACCCTGA 17368 32 100.0 41 ................................ GGCTTTATGGTTACTTTGCGCGTGTTAAACATGGTTTCTGA 17295 32 100.0 37 ................................ CTATCATCAATTGCTGATAGTTGCAGCTTGGTTCTGA 17226 32 100.0 42 ................................ AACACCCACAATAAACCCCTCGCCGGGAGAGGTAAAGGCTGA 17152 32 96.9 0 ..........................A..... | ========== ====== ====== ====== ================================ ================================================================================================================= ================== 29 32 99.4 42 AATAACCTTTGATGCCGTTAGGCGTTGATCAC # Left flank : AAAGTTGCGAAGGAGGAGTTTGCGGCGGGCAATGCGCGGCCGGATTTTCAGGTGTTGCTGACTGGTATTGATTTGGGAATTTGGGTGGATTTTGGCGGGGATGTTGGCAATCCCAAGCTGTGGGAAAGATTGCGGGAGGCAATTTTGCGCCCGGAGTCGGTGAGTAGATTTGGTGGGGTTTCGCTGGGGGAAAGTCGGGATTTAATTAATTCTGTTTTGCTGTGGCGGGATGAATTTGAAGCTGATATTTGTCAGTGGTTGATTTTAGATCGAAATGGGTATTTGGCTTTGCCTTGCTGGGTGGATCATGCGGGTTCTAAAAAGACTAGGTGGCGGCGCTATGTTTTGGCTGATGCTGGGGATTTTTTGCTGGCTGATGTGTTGGCTGGGGTTGATTGCTGGAGTTCCATCGGGCCTGAGTAATGGATTTAGTGTGGCAAGGTGCTTGCAAAAATGGCTGGGAGGGTCTATTGTGGAAGGGGTTAGGCGATCGGCCTACT # Right flank : TTGCAATGAAAGCGTTGCACAATTTGAGGATGATTCTTGTGGGGTGCCCCGCCCGCTGTGAAAACGCACTGGACGAGATCAACGGCCCATCCCACAAAACAATCAAAATCATCTCGCAATTATGCAACGCCTAACAAATGACTAATCACTAATCACTAATCACCAATTACCAAGGACTCCCAATCATCACAAAAGCCGACCAATAATAAGGATGCGACAACTTCAAATCCGCAAACCCTTGCAGCGAACTCGGCAACTCCACCCCCTCACCCCGACTCAAACCCCGCAATCGGCCACCCTCCAAACGCACATCCCCCCGCAACATCGCAATTTGCGCTTGTCGCAGCGCCGCCCCCTTAATTCGCGCCGTCTTCAACTGCTGGTAAAACTCACTCATCAATCCCAAAGTACCTTCATCACTCACGTACCACAAACTTCCCAAAGCCGTTTGCACCCCCGCTTGCAGCGCCAAACCCCCGAAACCCAACTCCGCCTGTGCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAACCTTTGATGCCGTTAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 15469-18359 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNV010000081.1 Microcoleus sp. FACHB-DQ6 contig81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================================================================== ================== 15469 37 100.0 34 ..................................... CTTTGTTGAGCTGTAAAACTTCTTCTATTTTTCT 15540 37 100.0 33 ..................................... TGATTGCAATCTAACGAACGAACAAGCACGAAC 15610 37 100.0 36 ..................................... TGGGCAGTGGCAAGAGGCCGAAGACGCCGAGAAATC 15683 37 100.0 38 ..................................... TCTGAGTTTTTCTCCGATGTGGAAATATACGGCATTCA 15758 37 100.0 33 ..................................... TTTGAATTCCTAGCACTCAGAATAAATCATCAC 15828 37 100.0 35 ..................................... GCACTAAGAAGGGTAATTGGCTTTATACTAAAAAT 15900 37 100.0 35 ..................................... TGCAATACGATACCAACAGCACCAGAAACAGTAGC 15972 37 100.0 35 ..................................... TCATGATTGATGTAGTCCTTGCAGCCACCTTAAGC 16044 37 100.0 38 ..................................... AATACTGCTGAGATGATTAGCACTACTTACGGAATGGG 16119 37 100.0 36 ..................................... CTTGCTGCTAAAACCTGAAAATATACTTTTTTTAGC 16192 37 100.0 39 ..................................... TACACTTGGTGTACTTATCAGATGATCCAAGTTAATACT 16268 37 100.0 36 ..................................... AAGAGTATAAAAAACAATCCATCAAAAACGCGGGCT 16341 37 100.0 38 ..................................... CTGTTGGTTTGTTGGGGTAATTGGTGTTGATGAATCAG 16416 37 100.0 34 ..................................... GGATTGTAAAGTTTCTAGAGAAGGCCCATCAAAA 16487 37 100.0 36 ..................................... CCGATATAACGCACTCGCTGACCTTTCACAAAACCA 16560 37 100.0 39 ..................................... CGTTTGAGGGCTGTTGATGTGAGAGAGGGAGAATCAGGA 16636 37 100.0 37 ..................................... TGGAGCTAAAAAATTATGGCACAGTGCGACGGCTACC 16710 37 100.0 33 ..................................... CTAATCATTAGACCTATTCATTAAACCTAATGA 16780 37 100.0 34 ..................................... CTTGAGTGGCATTGAGCTACACCAACTAGGATAA 16851 37 100.0 35 ..................................... GGGAGGAAACATTTCAGCCAGTGGCATATTTGCCA 16923 37 100.0 34 ..................................... GGCTTGCGACAGCCATGACTCGCACCCTATCCCT 16994 37 100.0 40 ..................................... AGGGAAACCAAGCAGCCGAGAATCAGAAGCTTTTTAGTTG 17071 37 100.0 35 ..................................... AATGCGGCATAACTCGCCGCTGGCAGCTTTTTGGC 17143 37 100.0 34 ..................................... CCGGAATTTGCCAACCGATCGCGAAATTATCCAC 17214 37 100.0 34 ..................................... TATTTGCATTAAAAGCCGTCTGGCTGTATCTACT 17285 37 100.0 37 ..................................... TTCATTGCTTGTTTCGATTTCGCTACTTTTTAGTGGA 17359 37 100.0 35 ..................................... CCTGCTTCGACAGAGAGAATAGTCGTGACTCCAGA 17431 37 100.0 36 ..................................... GAAAACGGCTGCGGGGATAAACCCGATCGAAGGTAC 17504 37 100.0 34 ..................................... TTGTTGGGTTTTGGCAAGAAACTGGGAAAGAAGG 17575 37 100.0 34 ..................................... GCGAAACCAAACTTCAAACTCTGCTGGTTTGAAT 17646 37 100.0 37 ..................................... TTCACCCCGCAACCATCTCCCGGCATCTCTCCAACTC 17720 37 100.0 36 ..................................... AATTTGATTAAATTCGAGGTTTAACGCGGTTAAATT 17793 37 100.0 34 ..................................... CAATTCCTGGCGAAGAATTTCCTTACCTGGCCCT 17864 37 100.0 35 ..................................... TCGATTTCTCTGTTGATTTCGGGTCTGACCGTGAT 17936 37 100.0 34 ..................................... ACAGCATTGGCCCCAACAGCTCGACCGACAAAAG 18007 37 100.0 33 ..................................... CAGAATCGATTCCTATACCAACAAGATACTTCC 18077 37 100.0 33 ..................................... TTCTTGGTATGTAGCACTTGTTTTTTCTATTAC 18147 37 94.6 138 .................T...........C....... AGAAGCGGGATGGGAAGATCGACGATCGCACTCAGAAACCGGGTTTTTTTGCTAGCATACTTCCGAACTCGTACAAACGGCAAAAAACCCACCTTCTTTGATTTTGATGCCTATTCCTCTTAAGATCTTCAAAACTCA T [18172] 18323 37 70.3 0 ....C..TTAA..C..................TTTTG | ========== ====== ====== ====== ===================================== ========================================================================================================================================== ================== 39 37 99.1 38 GCCGGAAAATGCCTAAAACCCTATCAGGGATTGAAAC # Left flank : AGAGTCTTTCTGCTGTAGCTTGCAGCAAACTCTTGCCGCTACCGTCGAGACTCAAAAACTGCTTGGGGCGCTGCTTGCGGCTGAGAGGCCAGAAGCGTTCGCCTTTACCGCCGGCGAGTATTACGGGAATTAAGGTTTTGGTCATGGTTTGAAGTTTAAGGGTTCTGATCTATTTTGCTCGACAGCTTATAATTATGAAGAGAATTGTTGCTGTCTGCGGGTTTTGGGGGCTAGGTATATTTTTGGGAAAAGTGCGTCTGTTGGTGGGTGTAAAAATCGAGGGGTAAATTTTTTGGGCTGTAATCCAATTTCTGTAAGGGTTTGAGGCTAATTCCTGGGGATAAGGGCAGACGCAATTGCTGAAACCTTTATAGGATAAGGGTTTGAGGGGTAAAGTTTAAATAGGGTATTGACAGGTCGGAGGCTGAAATGATATTTTTGCTAATACAGACGCAAATGAACGTTGAAAACCAAATACACCAAGGCTTCTGGAACGGGCG # Right flank : GTCACTCGATCGATCCAACTTGCATAAAATGATACCCGCGTATCGCCGGAAATTTCCCCAAAACTGCCATTATCGTCAACTTTATCAATATCGCTGATGTTTGTTTTGAAAAATCCCCGATCGCTATAACCCCAAGAACTAATCCCCGCAATCTTCCCGTCAACAAACGAAGGCCCGCCCGAATCTCCGCTAGCGGTAGCTATCTCATTTTTCCCCAAACCGCGATCGCGCAACCTCGGAAAATGCCTCCCCAAAGCATCGTGTTCGCTAGTTCCCGCGTCAAAATCAAAGATTAATTGACTCCCCAAAACCAATTCCGACATATCTGATTCTGTAGCATCTTTCAAAACATCAATTAAAGCATCATAGCGATTCTGTCCGCTATATCTTTTCGCCTCAAAATTAGAATTTTCCTCTTGTCCGTTTGCACCTAAACCGATATACCCGTATCCAACTTTTGTCAATACTTTTCCTACTTCATTTTTGTTTCTATTTATCTC # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGGAAAATGCCTAAAACCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.90,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 35722-37908 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJNV010000158.1 Microcoleus sp. FACHB-DQ6 contig158, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================================== ================== 35722 36 100.0 39 .................................... AACAGATGGCTAGAATCTTGTAATTGTCGCCATACTTGC 35797 36 100.0 52 .................................... TTTTTAAGCTTTTGACAGGCGCGATTAATAGGTTCGTCCATATCGGTGCCAA 35885 36 100.0 43 .................................... GAGCGAGTTATCAATGAGAAGCATTGCATAGTATTTGCGTCTC 35964 36 100.0 35 .................................... GTGAAAGTTTCTTTTAAGATACCTTTAATGGTTTC 36035 36 100.0 48 .................................... TGAAGATCGTGCTGTTGATCGTAACACCCAGCCATGTTGGTTCCGCAA 36119 36 100.0 35 .................................... ATTTTCCTCTGTAAGAAGCGCAACCAGTTTCGCTT 36190 36 100.0 42 .................................... AGCACCATAGCTTCAGCTTCTTCTAGCTCATCTATTTCGGCA 36268 36 100.0 37 .................................... GATGTGTTCTTCCATCCAGTCGCTCACCAGATTTCCT 36341 36 100.0 36 .................................... GGAAAAACTATTGATTTTTTTTGAGAGACAAACGAT 36413 36 100.0 44 .................................... AATTCCGGTACGGCCATTTTATTGATTATCCCCGCATAATTCCG 36493 36 100.0 37 .................................... TTGAGAAGTAACTTTAGTTCGTAATCCTCAAAACTGA 36566 36 100.0 35 .................................... ACCGTTGCACCTGTTTGGTTTGCTCCTTGAATAAC 36637 36 100.0 37 .................................... TCAATAATTTCGACTTTCGTCTTCGCGGATAAATTGT 36710 36 94.4 33 ..........C.................C....... GATCAATCCGAAAATCAATATCTGAATCCTTAA 36779 36 97.2 53 ..T................................. ACATCTGACGGACTCGGAAACTTGGCAAGATATTTGTGAATAATCTCGTCCTG 36868 36 97.2 37 ..T................................. ACCATTTCAACTCTTTGTGTGCTGCATAATCAGATGC 36941 36 100.0 42 .................................... GAGCCAAAATTAGCATCTTGAACCTCATAAATTCCATCTTCT 37019 36 97.2 42 ........................C........... ACCCAATTTAAGACAGATGGTAGATTATGACGGATGACGGAT 37097 36 100.0 41 .................................... CTAACCTTCTCTACTTCAGTGCTAGGATTCACCAACACTTT 37174 36 100.0 37 .................................... ACTTTTGCTAACTCATAGAAACCGTAGTATTGATCTC 37247 36 100.0 34 .................................... TCGGAGATTAAACGCGCTCGATGGCGTTTAACTT 37317 36 100.0 46 .................................... TTAAGCTGTTTTTGTCTCTCGAATAAGTTGATATCAAAAGCCGACA 37399 36 94.4 39 ..........A...........G............. CAAATCAATCGCTTTTTTCCGTAACGGATCTTTTTTCCG 37474 36 97.2 36 ...........T........................ TCGATTGTCCGAGATACACATTATCAGAGTCAGTGA 37546 36 97.2 47 .C.................................. ATCCAAGTCAGGAACATCCCGAATAGTCTTTGCCCGACTCCTGAGTC 37629 36 97.2 42 .......A............................ ATTGTGGACAAAATGCGATCGTCAAAATTAGGCTAGCGCTAA 37707 36 100.0 46 .................................... AAATCACTTCCCTTGATTGCGTTACCCTCATCGTTGAGAAAATTGA 37789 36 100.0 48 .................................... TCTGCTAGTTTCTGCAATTGCCCGATCGAGAATTTCCCGGTAATTTTA 37873 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================================== ================== 29 36 99.0 41 GTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TCTAGAAAACCCAAAACCAGGAGAACATAATTATGTCACAGGAATTCTTGCCTGACGACAACAAATTTGCACGACCAAATGACGACTCAGCAGCAGAATCGGAACAGGATGTGGTGTGTGTAACGGTGACAGGTTCGCCCAAGGGTGTCAGGGAAACCATACTCACCTTGTACCGCCTGGGATTTGCCCAAGTTGGCGATTGGAGTCCCGTACAACGTGCAGCTAATCCGAAGCAAGTGATGAGTGTGCTGATTCGCCGTCGGAAGCGCAAAGCGTAGGTGTGACAAAAGCACCTGAGCCAGCGATTATTTAGCTGGTATTGCGAGGCTCGCGGTAAAATAGCTCAAAGGCAATTTTTGCGTTGCGAGCCTCGCAGCTTTACTGGGTAAGGGTTTCAGCTATTTTCCTGGACGAGTAGTGGTGCGATTTCTGAAAAAAATCCCTGAGCCTCGCAAATCGCCTCTGGACACTTTGCGCTGTATGGGATGTACAATGCAGGA # Right flank : CGCGAGCGGCCCTGGCTACTTTCAACGTCAGGGCTCTTTTTTTCTCACTACTTGCTCAAACCTGAAATCCTGACCTAAACAAACCAGGAGTATTTGCCGTTATAATTACGCTTATTAGTACAAAATATTGCTTTATGGACTACCACGACATCATCACAATTGAACCGGGAAAACGCAGTGGCAAACCATGTATTTGGGGAATGCGAATCACCGTCTACGACATCTTAAAATATCTCGCCGGTGGCATGACGGAAGCAGAAATTCTGGAAGATTTTTCCGAACTAACTTCGGCAGACATCAAAGCCTGCCTTGCTTTTGCCGCAGATCGTGAAAAAAAGTTATTTGTGGCATCCCTGTGAAACTTCTATTTGAAGAAAACCTCTCAGATGCAGCTTTATAATATAATTGAAACAGTGCTACCCAGCTTGTTAATTCAATGAAAATCACTGCGGCCGCCGCTTCCCTCGGATGTGTAAGTATTTTAATAACAATAGCAATCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //