Array 1 14277-13071 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZI010000024.1 Listeria booriae strain FSL L7-0094 NODE_24_length_46766_cov_82.524561, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 14276 30 100.0 35 .............................. CTGAAACTCACTGATATCAAAGGTTTTGAAAATGT 14211 30 100.0 35 .............................. GAAAAAACAGGCTTCCGCTCATCGAGAATTGTGAT 14146 30 100.0 35 .............................. CTTGTAAACTTTTATCTTTATTTTTTGCCAACTCT 14081 30 100.0 36 .............................. TCAAATGAGAAGGTTCCAGAGCTAAAGCCGGTATTC 14015 30 100.0 36 .............................. CCAATCGTCACTAAAATGTCATAATTTCCTATATAA 13949 30 100.0 36 .............................. TGCGTCCAAGGATGTGAGTACGGATGCTTATGTGAC 13883 30 100.0 37 .............................. AACAAAGGATTCAACGATTTCCGATTCTTCGACAACC 13816 30 100.0 38 .............................. TGGGTCGAGGAGGTAATCGAGGAATTGGTATCATTCCC 13748 30 100.0 37 .............................. TGTAGTTTAATCGTTATTTTAGTAGGATATAGGCTTA 13681 30 100.0 35 .............................. ACCGATAAAATCTACAAAAAAGGCTACACAATTAC 13616 30 100.0 36 .............................. GATCACAGTCAGTAAGCTTACCAGCAGTATCCAATA 13550 30 100.0 34 .............................. TTCACCCCTCATTTTTTGCGATAATAAACAGTTA 13486 30 100.0 36 .............................. GGAACAAAACTTGGCAAGGTAAAAGGCGTTGTAATT 13420 30 100.0 34 .............................. ACAGGCGGTAAATATGAGCGTCTTTGGAGTCAAT 13356 30 100.0 36 .............................. ACCAGCTTCTCAAGTTCAGTAAGCCCTAAAAGCTTC 13290 30 100.0 36 .............................. TACGTTAAGCGGCATGAATTGGCAGTAAAAGACGGG 13224 30 100.0 37 .............................. AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 13157 30 96.7 27 ........................A..... TAGGAAAAGGGCACACTTATACACCCT Deletion [13101] 13100 30 73.3 0 ......CC.G.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ====================================== ================== 19 30 98.4 35 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATTTTGATTTATGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCGGCACTACTTGCCAAATTGCGAATGGAATTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTCCGTAGCCAGTACACGCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGTTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 119168-119460 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZI010000004.1 Listeria booriae strain FSL L7-0094 NODE_4_length_251480_cov_78.898195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 119168 30 100.0 35 .............................. TCTTATTCGGCGCCAGGACCAAGTGAAACAAACAA 119233 30 96.7 36 C............................. ATAGAGGACGGAATGGAAATATACAATCAGGATATC 119299 30 100.0 36 .............................. CCAAAACCAGATATTGAGGGGTGGGATGTTCATACT 119365 30 100.0 37 .............................. GTAAGTATGTAGAACTTAAAAATAAAAACTGAGGTGA 119432 29 86.7 0 .............C...A.....-.....C | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 96.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CGCACAAAGAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAAATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAAGCGGGGTCAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGAGTTTTGTTAAGCGTTGATGTGATTGGATTTGAGGCTGTTTTTGGAGTTCGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGAGAGTAGGCGTTGATGGGGTACC # Right flank : CCCTTTTATGATTCTAGCAGATATTCTAACCATAGAAATAAATTGAATCAAATCAAATCTTCTTTTTAGAGGTTGCTGACAACATGGTTAACGATAATTAATTGGTGAGACTGTGATTGGAACTGCATATGAGAAGTTTGAAAGAGAAGCTTTAAATACACATATTAGGAAAAATGATATTAAGTGAGAAGCATCAATCGGTACATAAAAAAATCTTAAAGCAACTAATGCTAAGTGTATAACTTCAAAAAAGAAGGAATTTAGAGGTACTTTTAGTCTATTGTATAAGAAGTTACAGTTCAAGCTGATGCTGTTTGCGGTGCAGATGGAAGTTTTTCTTCATGAGGAGCGAGCGGGTTACCGTTAGAACTTTCGAAGGTAGCGTTTCTATGAGTCTAGGCCGTTAAAACTTTGATTATGTTATCATTGAACGATGAGCGAGATAGTGAAGGCAATATATTTAATTTTTGTGAAAACGTTTGCGATAACATATTTTGCAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 50012-48340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZI010000014.1 Listeria booriae strain FSL L7-0094 NODE_14_length_89397_cov_76.189325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 50011 30 100.0 36 .............................. AAATTTGAAGTTGGAAAATACTATTATTCTCTAAAT 49945 30 100.0 36 .............................. CTCGTATGTTTTACGCGGCTTGAGGCAAACTAGTCT 49879 30 100.0 35 .............................. TTCAGCCGCCTTTATGATTTCGTAGTTATGCCGAC 49814 30 100.0 36 .............................. GAAAGAATCTCCTGCATATAGTCCGCACGGAATACC 49748 30 100.0 37 .............................. AGGGTTTTAAGCTATGTGTGTGATGATAGTAGTCAAC 49681 30 100.0 37 .............................. AACTTCAAGACCTCAAAAAAGCAGAGCAGTATATCAA 49614 30 100.0 37 .............................. ATGTTTTGTCGAGCTGCTTTTTTCTTCTCGATCTCTG 49547 30 100.0 36 .............................. CAATCTGGTTTTAATTTACGAACAATTGCGGTCGAT 49481 30 100.0 34 .............................. GAGCTTCTAGTCTTGGGAATTTTTTTTCATCCAC 49417 30 100.0 35 .............................. ACCTTCTTAGCGCCCAAGCGGCGAAGCTCGTCAAT 49352 30 100.0 36 .............................. AAATCAGTTAGAAATAGGAAACATCTACAAAACGCG 49286 30 100.0 37 .............................. TCCTGCCGAATCGAACGCTAATAAGGTTGCGGCGTCC 49219 30 100.0 36 .............................. TAGCATAGTGTTGTCACCCATTCGCCAGATTTTACG 49153 30 100.0 36 .............................. ATGGCAGTACATACCGCGTCGGCTTGGAAATTAAAT 49087 30 100.0 36 .............................. TTACCTACAGAAACATCGAACCATAGTGACTTGTCT 49021 30 100.0 35 .............................. CGGCGTACTTCTGACGTGGAGGGGTTAAGAAAACG 48956 30 100.0 36 .............................. GCGTTTAATTTAGCTATTTGAGCATCAACCAGCGCA 48890 30 100.0 34 .............................. GGAAAGGGTCGATTGTAGTAAAGACTTTTCAATA 48826 30 100.0 36 .............................. TGAAGGAGATGAACGCGGATACTGCGAGGCTAAACA 48760 30 100.0 36 .............................. TCGCTCATACTCGTCACATTAATGACGTCGCCTTTA 48694 30 100.0 34 .............................. GTAAATACTTGCGTCATGTCGCTAAAGGTGGCCG 48630 30 100.0 36 .............................. AACGTGGCGGACTTTTACCAGCCGCTCGCGCTACCT 48564 30 100.0 34 .............................. CAACATGCAACTAGAGTTAATCAGCCGTGGCTTT 48500 30 100.0 36 .............................. AAAAGAAGACACAAACTGACGACACAAAGGACTAAG 48434 30 100.0 35 .............................. CAAGTTAAAAAATTCAGTTATACCGTGGTCGATGA 48369 30 90.0 0 TG.....................A...... | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 99.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCATCTTGATGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCGTTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTTGTTCAGAAAACAACATTCGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCGATGATTGTGCAAAACGGGAAGAAAAAGATAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGGTTTTTGTTATGCATTGGTACTAAAGGGGTTAAGCCTGTTTTCGGAGTTTGGGCTGTAAGGTTTGAGGGCAATAATTTAGCATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGCGGTATGATGGGAGTAAGCGCTGAGAGGGTACCT # Right flank : AAGAACGACAACAATGACAATGTTTTTATCCAATCCCAATGTAAATATGAAACTCCCCCATAAACATAACATCCCCCAACCCAATAAACTATAAGCAACCACTAAACTACCCAAAGTCTATAAGTGTTTTTTTTCATGCTCAAAAAACCCATAGACTTGCTTACTGTAAATGAAACAAATAGGAAGTATAGAATATATTTCATACATTTAAAAAATATATTGGTGAAAAATATTTACAAAAATAAAATAATAGTGTAAAATTCTTTCTGAAAGGAGCGTTATGATGAATATAAATACACTAAAAGGACAATTGATAGTATCTTGCCAAGCTTTAGAAGGTGAACCTTTGCACAGTTCCATGATTATGGCGCGAATGGCGCTTGCTGCTAAAGAAGGTGGTGCTAAAGGAATTCGAGCAAATTCTCCGGAAGACATTCAAGCAATCAAAGGACTAGTGGATTTACCTATCATTGGCATTTGGAAACGCGATTATGAAGGTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 54336-53259 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARZI010000014.1 Listeria booriae strain FSL L7-0094 NODE_14_length_89397_cov_76.189325, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 54335 30 100.0 36 .............................. AATGTACAAAAATAATTTAAAGATTGAGGTGTAGAT 54269 30 100.0 36 .............................. TCCGAGGGCATTTAGGGGTTCAGATAGACCCTGCTG 54203 30 100.0 36 .............................. AGTGGATTATTGATCATATGCCGAAACATGAGGTAT 54137 30 100.0 34 .............................. TTTAACACAGAAGAAGTTTATCATGATTTAGAAA 54073 30 100.0 36 .............................. AGCGAAAAAGAGGTAACGCGACAAGATAGGAGGTAT 54007 30 100.0 34 .............................. CTGATTAGAAATATAACAACAAAACAATTTCATG 53943 30 100.0 35 .............................. TAAATTTGGTTTCGGATTTATTGACTGGCATTTGG 53878 30 100.0 34 .............................. TCTAAAAGATACGTACCAGCAAAGCTAAATTCAC 53814 30 100.0 36 .............................. GTTAGAGGAAATAGGTTTCTTACTGCAGAAAATATT 53748 30 100.0 36 .............................. AGTTCTGACTGTTGAAGTTTAAATTCACTTGTAAGC 53682 30 100.0 36 .............................. CTTGCAATCGTGTTACTACAGCAAGTTTTAAACTGG 53616 30 100.0 36 .............................. CAAATGATGTAGGCTCCATCCTGTACTTGCATTTTT 53550 30 100.0 36 .............................. ACATGTCCTTTAAAGCCAGTGATTCTTTGTTTAAAA 53484 30 100.0 36 .............................. TCAACACAGGATTCACGAGTTGCACTTTATCTTCAT 53418 30 100.0 36 .............................. TAGAAAAAGTAAAGTTATTCGCAACGTTGAGGTTCA 53352 30 96.7 34 ..........................G... TTCTCTTTTTATAGCTGCCCTAATTGTCATCAAA 53288 30 83.3 0 ....................C..CA...TC | ========== ====== ====== ====== ============================== ==================================== ================== 17 30 98.8 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GATGCTGAGCGCAACATCAGACCAGTGCCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACGACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGTGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAGGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCATAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGGTTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGAGTTAAGAGGGTACCT # Right flank : CCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAATACTACGAGTTACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCAGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTTGACGTATTTGAGGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTGGTTACTTCAAAAAATGAATTACTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAACC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //