Array 1 6798-5310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIG010000005.1 Listeria seeligeri strain FSL W9-1178 NODE_5_length_203367_cov_96.898765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6797 36 100.0 30 .................................... TTGCTGTATTATTTAACTTGTCTAAAGAAG 6731 36 100.0 30 .................................... TAAAATCTAAAGCAAGATTATATTTTTTTA 6665 36 100.0 30 .................................... TAACGAAGCCAGCGGAAATTATAGATCCAG 6599 36 100.0 30 .................................... ATTGTTTAAGAAATTGGCACAAACACAAGG 6533 36 100.0 30 .................................... CTTATATCAATCTCTCCTATTTCCCCTATT 6467 36 100.0 30 .................................... TAAAAGTTTTTTCAAACGATCCACCTAGCT 6401 36 100.0 30 .................................... GATATTTCTAATAAAAATCAAACAGCTACT 6335 36 100.0 30 .................................... AATTAATTAATGAGTACAGAGGAGCTTTAC 6269 36 100.0 30 .................................... TAAATATTCGCCTGCCATCGGTCAAAGTGA 6203 36 100.0 30 .................................... AACCACTTCGCCACAAATTCTGGCACAGTC 6137 36 100.0 30 .................................... CTCAACCAACAGGTAGTAATATTAAAGCGG 6071 36 100.0 30 .................................... AAGCTCAATCAAAATACCTCTCTCGTCATC 6005 36 100.0 30 .................................... CGAGCTTCATAGACTTCTCCGTCTATCTTG 5939 36 100.0 30 .................................... TGAAGATATATTAGGCGTTACATCAGTTAA 5873 36 100.0 30 .................................... CATTTATCGTTTTTCGGAAATGCACAAAGG 5807 36 100.0 30 .................................... CACAGAAGACCTGAAAGAAACAGGAATAGT 5741 36 100.0 30 .................................... CGGAGAAAAAAGTGAACTCTTAAAGATGTA 5675 36 100.0 30 .................................... TAAAAGACTTTCTATCTGGTATGTGGGAAG 5609 36 100.0 30 .................................... CAAGCTCAAGATATTTTATATACAAAAGAA 5543 36 100.0 30 .................................... CACATACATTTCAGACATCGAGTTGGAAAT 5477 36 100.0 30 .................................... CTGAAAGAGCCAAGAGCCTCTGTCTGTTGT 5411 36 100.0 30 .................................... TTCTTGCTCTTCTAACAATCCAAGCGCTTC 5345 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGCGAGGATGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCACCTGAGAAACTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 172426-171164 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIG010000003.1 Listeria seeligeri strain FSL W9-1178 NODE_3_length_400658_cov_85.196709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 172425 29 100.0 37 ............................. TTAAAATAAACATTGAGAAAACCTAATCCCCCATCGA 172359 29 100.0 34 ............................. TTAGAAGGATTAGATTTAACTAAAGAAGAACGTG 172296 29 100.0 36 ............................. AACCTTATCTAGATGGGCTAGCGGAATGGAGAGAAG 172231 29 100.0 34 ............................. AATGGGAGATAATGTATATGGGTAAAAAGTCCTT 172168 29 100.0 37 ............................. AAATTGGAAAAATGGGCTAATGACATCCGCATCATGA 172102 29 100.0 35 ............................. CATTTTAAGCTAATTTGACAATATATCTGTATAAA 172038 29 100.0 36 ............................. ATCTGTCATTTTCATGTGTTTTAACAGGTTGCAACG 171973 29 96.6 35 T............................ CTAGTTAAATCTTTGGGTAAAAAAATATCATCTGG 171909 29 96.6 40 T............................ TCAGTCGTTCGGTTGTAGTAACATAGCGCTCTACTTCTTG 171840 29 96.6 36 T............................ GCCGGAACAAAATTAGAAGTTGTGTACGGTGAACGG 171775 29 93.1 35 T...............A............ CAATATGTGGCGGATTGGATTGTCGATAGTAAACG 171711 29 96.6 34 T............................ GTGATTGAAGTTCTTCCTAAGTGTTCTACAACAC 171648 29 100.0 36 ............................. ACAGGAAAGGGAGAAACGTCATTAGCTGGGCTAAAG 171583 29 96.6 35 ........................C.... AAAAATTTAGTAACTGCGCATGATAATGCGGTCAA 171519 29 100.0 37 ............................. ACCTGAAACAGCGAGCGGGACAACGGGAAATTTCACC 171453 29 100.0 36 ............................. GAAAGTGTAGAAAATGACGACTACAAGGGCTGGGGA 171388 29 100.0 36 ............................. ATGCTTACCATACAACCCGCCATAGCCGTTTTTTCC 171323 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 171258 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 171192 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================== ================== 20 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAAATTTGGTGGTGAACATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTGTGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTTGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATCTCACCTGCTTTTTACGGTGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTCATTCAAAAACCACCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGGGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTCTAGTAGGGTGTGGAAGTGAAGAAGCTTCAAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAATC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 182545-181034 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIG010000003.1 Listeria seeligeri strain FSL W9-1178 NODE_3_length_400658_cov_85.196709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 182544 29 100.0 35 ............................. GAGATTGACAAATACCGTTTCACTAAACTAGCACA 182480 29 100.0 34 ............................. CACATCTCCGGAAACGATGCTGAAACTGGGATAT 182417 29 100.0 35 ............................. CAACTCGGAAAAATTTCACTCGATAAGTATGGGGA 182353 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTCCTTTCACTTTTAA 182289 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 182224 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 182160 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 182097 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 182033 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 181969 29 100.0 37 ............................. TATTTATAACGCCAATTACCTTCTTCAGTCGCTACAG 181903 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 181838 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 181773 29 100.0 35 ............................. TTAGATCAAATAGATTCAATTCCTCTGATGGCACC 181709 29 100.0 34 ............................. GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 181646 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 181582 29 100.0 37 ............................. GTTTTAGTCAGCAATGCATTAATTACTTTCATACTCG 181516 29 100.0 36 ............................. CAGATACATCTACAACACGCAAAAGCGTCCCAACAG 181451 29 100.0 37 ............................. TAGTCATCATCTAGTTTTATTCCCATCACCACATATC 181385 29 100.0 35 ............................. AATCGAACGGATATTCCAATACTCGAATCGCCTTG 181321 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 181256 29 100.0 36 ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTAGGTTC 181191 29 100.0 35 ............................. AACGATGAAAAAGCACAAATAGAAGCATTAAAATC 181127 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 181063 29 86.2 0 ........C....C..A...........G | T [181036] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.3 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TAAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAAGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCACAGATAGTAAGCGTTTACAAATTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGCGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTGCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGAATTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 189130-188779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIG010000003.1 Listeria seeligeri strain FSL W9-1178 NODE_3_length_400658_cov_85.196709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 189129 29 100.0 37 ............................. TTTTTTACTCCGCTGGCATCAACAACAATATCCGCTC 189063 29 100.0 34 ............................. ATTGAGCGCCTTAATCAACTCTTCGGGTGTTACT 189000 29 100.0 34 ............................. AAGGTACATATTTGCTTTTAAAAAATGGATTATC 188937 29 100.0 36 ............................. TACTTTTAATTTTCGGTCCTGTAAGCCTACTTTTAT 188872 29 100.0 36 ............................. CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT 188807 29 96.6 0 ............A................ | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCACTCCGTTATGGCTGGAAACGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGGGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //