Array 1 109872-107158 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDD01000001.1 Salmonella enterica subsp. enterica serovar Elizabethville strain BCW_2678 NODE_1_length_580515_cov_5.66981, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109871 29 100.0 32 ............................. TCTGGTGGCTGCCTCATATTGTTGCGCATCTA 109810 29 100.0 32 ............................. CGAATGGCTCAACTTTGAAGAGTTCAGGAAAG 109749 29 100.0 32 ............................. TGGATGATCCGTGCTTTGGCGGTGACGTGATC 109688 29 100.0 32 ............................. TTAACTCCACCGTATCGCCAACCAGTAATTCT 109627 29 100.0 32 ............................. GGCAGGGTATTGACCAGTCGATGCACTCTGCC 109566 29 100.0 32 ............................. TAACCTTACACCCGGTAAACAGGAACCCGTAA 109505 29 100.0 32 ............................. AGTGTTAGCCGCGCTGGCTGGAATGGCGCTGA 109444 29 100.0 32 ............................. ACTGCAAGGTCGTAGTCACGGCGAACACAGAA 109383 29 100.0 32 ............................. AATTTTGCGGCCTCACTGGAGGCCAGACGTGA 109322 29 100.0 32 ............................. CCGGTTAATCCGGCTTTTTTTGTGCCCTCGTC 109261 29 100.0 32 ............................. CCAATGCTGATCAGGCGTGGCTGGTGGGGCGT 109200 29 100.0 32 ............................. GGCGAGCAGCAGATAAACACCGAGAACCTGCA 109139 29 100.0 32 ............................. CCTCTGATTCTAGGGGGTACGAATATCACATA 109078 29 100.0 32 ............................. CGCAGCGATGGATTCACAGGTGCGTGAATTAA 109017 29 100.0 32 ............................. CGTATGCGTCGGCTGGAGCACCGCAAACACCA 108956 29 100.0 32 ............................. GCCGACCAGCGTCGCTGGGTAATGCATTCTGG 108895 29 100.0 32 ............................. TATGACGATACCAGATACCATCAACCCATTGA 108834 29 100.0 32 ............................. GCGTGGTTCCAATCAGAGCGTGAGCGACTTAA 108773 29 100.0 32 ............................. GGCGATGGCACAAAACGGTCAAAACTCATAAC 108712 29 100.0 32 ............................. GCGAACCTGCGCCAGCTTACGGCTGGATCGAA 108651 29 100.0 32 ............................. CCCATTATCGTCCTGCATCGCCGAGATTTCAC 108590 29 100.0 32 ............................. CGTTGGAATTTCTGAGTTCACCGGGCGAAAAA 108529 29 100.0 32 ............................. ATTACAGCGTTCACCGCGTTACCCTGGACGAT 108468 29 100.0 32 ............................. AATCTCCAATACAACGCGGATGTCTTCATCAG 108407 29 100.0 32 ............................. TTAGTCACAACGACTATGTTGGCAACGGAACA 108346 29 100.0 32 ............................. CATTGGTGTGCATCAGATTGTATGCCAGAAAC 108285 29 100.0 32 ............................. AAACGCACTCGCTACGATGAGTACCTTGATTC 108224 29 100.0 32 ............................. AAAAAAACATCATGGATACAACGCCGTTTTTA 108163 29 100.0 32 ............................. GTGAAAACGACGGCGACGGAGCAGGGGAACGC 108102 29 100.0 32 ............................. GTTATGGTGCGGGTGGTTCTGGTGGTGGTTCT 108041 29 100.0 32 ............................. TGTTAACACGGTGTACAGGGGGCCACCGTGGA 107980 29 100.0 32 ............................. CGCCTCACCGGACCGCTGCCCTTTCCAGTTTT 107919 29 100.0 32 ............................. AGCGCATTCGCGAGCTGGACAAACGCCTGATT 107858 29 100.0 32 ............................. GTGAGGGTCAGCCGTTCTCGCAGCACGTCGAT 107797 29 100.0 32 ............................. CGGGTAAAAAAAAGCCCATGCGCTAACATGGG 107736 29 100.0 32 ............................. CCCGTTAAAGAGGACGTAGCCAAAAAGCTGGC 107675 29 100.0 32 ............................. AGATAATTTGAACAATTCAGTTTTCCCTGTTC 107614 29 100.0 32 ............................. GTTAAAAGAAAATAAATAGCGAGGAATATAAT 107553 29 100.0 32 ............................. CGTGCACCCGGCATTTTCTGGAACGTGGTCAT 107492 29 100.0 32 ............................. GCAAATATGTTGATCGGGATTCTGGCCGCACT 107431 29 100.0 32 ............................. GATTCGTCCATCTCACCGCGATCAATGCAGGC 107370 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 107309 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 107248 29 96.6 32 .............T............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107187 29 89.7 0 A...........TT............... | A [107160] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCTTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAACAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 129356-126581 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDD01000001.1 Salmonella enterica subsp. enterica serovar Elizabethville strain BCW_2678 NODE_1_length_580515_cov_5.66981, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 129355 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 129294 29 96.6 32 ............................A TTAGCCAGCGCCGTGAGCACCTGATCTATCTC 129233 29 100.0 32 ............................. GATTCAGAATCTGAACGTTCAGAACCTGAACG 129172 29 100.0 32 ............................. TTAAGCGCAGTATGATCATAAGATGGAGTTGC 129111 29 100.0 32 ............................. GAATTGTTGTAATGGGAACTGGTTTAGCTATC 129050 29 100.0 32 ............................. AATCCCAACACGATGGCGGGTATCCAGCCCCC 128989 29 100.0 32 ............................. CAGCCAGCGCCGAAAACGTCTTCAATGGCGGC 128928 29 100.0 32 ............................. TTGCAGGGGTTCAATAATAAGGTGTCACGTTA 128867 29 100.0 32 ............................. CCATTAGCTAATTTTTTTAAAACGTCGCGGGG 128806 29 100.0 32 ............................. TTTCAGCACAGGATCAAATAATGGTTGTGTTT 128745 29 100.0 32 ............................. CGGGGGATGACACTCGCGGAGCTGAGAACCGC 128684 29 100.0 32 ............................. CGACTTTTTATGTTCGTTAATTATATTACAAT 128623 29 100.0 33 ............................. GGTTAATTAGGTGAATCAGTATCGTAATTCAGC 128561 29 100.0 32 ............................. CGCCGCTGGGGCTGGTGGCGGCAGGGTTCACA 128500 29 100.0 32 ............................. GGGGATTTTATGAGCAAGGAAGGGGACGTCAC 128439 29 100.0 32 ............................. GGCATAAAACTGCTGGTAATGGCGCGGCTCGC 128378 29 100.0 32 ............................. AGCATGAATTTCTCAACGTCTGCGCGCGAATT 128317 29 100.0 32 ............................. CAACCGCTTTTTGCGCGAGGGAATCGCCAGTG 128256 29 100.0 32 ............................. ATCATTACGTCACCCGGCTGAGGCTCGCTAAC 128195 29 100.0 32 ............................. TCAACTCTTAAATCATGGGCTAATGGTTATAG 128134 29 100.0 32 ............................. CATGGCCTGATTTCTGAATTACGTAAAACGTT 128073 29 96.6 32 ............................T GGCCCGGATGCGGTCGGACGAACCCGTCGCCC 128012 29 100.0 32 ............................. TCGCCAAATAGATCCCGGATAGATCGGGCTAT 127951 29 100.0 32 ............................. AAAACTCCATGGGAGATATGGAGCCTGTATTT 127890 29 100.0 32 ............................. GGACGTGCTCGTGGTCGTGGTCTCGGGCGTAT 127829 29 100.0 32 ............................. CCGGCGAACAACGACAAACAGAGGTTATTAAA 127768 29 100.0 32 ............................. TTTTGTGATGTGTGAGTTTAATGTATTGAAAT 127707 29 100.0 33 ............................. CATCGCGTTCAGAGTGAAGATAAATCCATTTAC 127645 29 100.0 32 ............................. CGGCACCCTGGCAGAATAAACACCGTGGAACA 127584 29 100.0 32 ............................. TAAACCGCTTTTTCCTGGCTGTTTAGCTTTGA 127523 29 100.0 32 ............................. AAAAGGACAAGCCAGATGTAAAAGCTGGTTAT 127462 29 100.0 32 ............................. CAGCCGGACACGGCATTGACTATGCGGCATCT 127401 29 100.0 32 ............................. CGCTTTTCTTTATCAAGAGATGATCCATTCGG 127340 29 100.0 32 ............................. GTAATCATTGAACAGAAATTCGCTGAGAGTAT 127279 29 100.0 32 ............................. TGCGGGACCTCAATCGACACGCCAGACGAGAT 127218 29 100.0 32 ............................. AATCGCGCGCGCTGGCAGGGGAAATGATGGTC 127157 29 100.0 32 ............................. AGCCGAACGAGGCACGACTAACTATCTGGGGT 127096 29 100.0 32 ............................. GCCGCTCGTTCGCAGCGCCGCATGACGACTCT 127035 29 100.0 32 ............................. GCGAGCGCAGGTATCGCAGGTGCGATGGCGAT 126974 29 100.0 32 ............................. AATCGAGCTATCACGAAGAACTGGAGAGCATA 126913 29 100.0 32 ............................. ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 126852 29 96.6 32 ...........A................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 126791 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 126730 29 96.6 32 ...........................T. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 126669 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 126608 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATATGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 113915-114312 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDD01000008.1 Salmonella enterica subsp. enterica serovar Elizabethville strain BCW_2678 NODE_8_length_250839_cov_5.31364, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================== ================== 113915 32 81.2 31 ..G....A.....G..C........G.....A CTGTGGGTTAGCATCAACCGACAGCGTCTGT 113978 32 87.5 31 ..C...T..................G..C... TTGTGGATTGCGATCGAGCGTCAGCAACTCC 114041 32 93.8 28 ...............AA............... TTGATTATCTGATACCGACAGCATCTGT 114101 32 100.0 28 ................................ TTGGTTACCTGCTACTAACAGCCTCTGT 114161 32 100.0 28 ................................ TTGGTTACCTGATACCGTCAGCACCTCC 114221 32 96.9 28 .......A........................ TTGGTTATCTTCGACAGTAAGCACCTCC 114281 32 96.9 0 .......A........................ | ========== ====== ====== ====== ================================ =============================== ================== 7 32 93.8 29 AGTCCTGCCGGCAACGGCGGCAGGCTGGTCAG # Left flank : TCTGGTGCAGAGCAAGTGTGACCCGATCCTGGCAGCTTGCTGTTGCCTCTGTTGCCATGGCAAAGGTTTTTGCTCTCAGCGCCTCATCTTCAGCCAGTTGTACCAGCCAGGACGATATCTGTGCCTTAAACCCCGCGTCCTTTATGCAGTTTTCCGTCTCACCCAGTCTGTCCAGGAAGAGGCTGAAGGCGGCAGCGTTATCTTCCTGTCCGAACATATGCCATCTGTCTGCAGGAGCCGGTTCGCCCTCCCGGGCAGGCACCAGCCAGTTAGCGGCCGCCAGGTGCAGTGCCCGTGCTTCCCGGGGGGCGGAGGCCCCCGCCATATCGAATAGTATCCTGGGGCCTGAATAGCCAGGCGCGCTGGTGATATTCTGCAGCGCCTGCAGAGTGCGTTCAGACAGAGGATTGCCATACAGATTTACGATTGCCTCTGAAGACAGACCCGTGATGCTTTCCGGCAGGCGGGTCAGTTGGTTATTGCGGGCATACAACCGTTGT # Right flank : GATAATTATTATGAGGAATAACCAATGTTGTTATATGCGCTGGTAAACAGTCTGGTAAGGCGGTAAGGCCTGACTCTCCCACATTAAGCTCTCGACTGCCGTTATTCAGGCAGGTACATATTCTCTGTACCGTCGCAGCACGACCGCGTAACTCTTCTGCTGGCGCAGCCCCCTTCCATTCTGACCAGACAGCATCATACTCTGCTGGTGTCTGTGGAGCCGTCGGAGCCGGAAGGGGGGATACCTGGAGTGTCCCGGATGCCCCTTCCGCATGTTCTGTACATTCCTCTCCCTGTTCTATGTCCATGGTGAAGCGATATGTTTCATTGTGCCCCTGGCAATTCACGGTATAGTTCCCGGCGTCATCAAGGGTGACCGACAATATCTCCTGGTTGTCTGCATCCAGGATACAGAAGTGGCTTTCCCCGTGGCGGCCGGAGTGAATGCTTTCCTCGTATCCGGCATACACGAGCATCCTGAGCTGTTCAAATCTGCTGACT # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCCTGCCGGCAACGGCGGCAGGCTGGTCAG # Alternate repeat : AGTCCTGACGGCAACGGCGGCAGGCTGGTCAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA //