Array 1 216381-215496 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQH01000002.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 111 NODE_2_length_703666_cov_20.4655, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216380 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 216318 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 216257 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 216196 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 216135 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 216074 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 216013 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 215952 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 215891 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 215830 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 215769 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 215708 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 215647 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 215586 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 215525 29 96.6 0 ............T................ | A [215498] ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 233888-232640 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDQH01000002.1 Salmonella enterica subsp. enterica serovar Saintpaul strain 111 NODE_2_length_703666_cov_20.4655, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 233887 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 233826 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 233765 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 233704 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 233643 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 233582 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 233521 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 233460 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 233399 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 233338 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 233277 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 233216 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 233155 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 233094 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 233033 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 232972 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 232911 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 232850 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 232789 29 100.0 32 ............................. TCCCAACTCGTCAGGGCGGTTATCCAGCGCCA 232728 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 232667 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //