Array 1 53872-56677 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHS01000021.1 Roseburia sp. AM23-20 AM23-20.Scaf21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 53872 36 100.0 30 .................................... TTGGAATAAAAAAGGATGGCTTAAATGGCT 53938 36 100.0 30 .................................... ATGGCAGTTGATCGTGATTGAACAGAACGG 54004 36 100.0 30 .................................... ATTAACAACGCTTTAGAAATTGTCAGACTT 54070 36 100.0 30 .................................... GCAGGAACTGCCCCACCTGCACCGATGAGA 54136 36 100.0 30 .................................... TGTACTACAAACTTTAAAAGAAACCGGTTA 54202 36 100.0 31 .................................... GTGAAGTTTTTACCTGAACCAGCAGGGCCTG 54269 36 100.0 30 .................................... ATTGCAATTTAAAACAAATGCATTTGATTT 54335 36 100.0 30 .................................... AATGTATAGAAAAGCATGGAAGCCGTCAAA 54401 36 100.0 30 .................................... ATTTTCAAAATGCGGAAATAGGATGGAATG 54467 36 100.0 30 .................................... TGACTTTTGATATTGAAACAACTACTATTT 54533 36 100.0 30 .................................... TATACCAGACGGTAATGCAGGCAGACTCAC 54599 36 100.0 30 .................................... CGGACGTTTGAAACGGGGAATGGGGAAGAG 54665 36 100.0 30 .................................... CTGCTGTTTATGGAATCGTTGGTAACTGGG 54731 36 100.0 30 .................................... GGTAATGTCTACTAGAGATGTGCTCCCATT 54797 36 100.0 30 .................................... AGTGCTTGATAAAGGTGTAACAAAACCAAC 54863 36 100.0 30 .................................... TGGTAAAGGCGATTGCAGTTCCTTTGTTAA 54929 36 100.0 30 .................................... TGGAAAAAAGTATTGATTACGCACAGGGAG 54995 36 100.0 30 .................................... ACAAAAAACGAAACATTAGAACGTCACATG 55061 36 100.0 30 .................................... TTTTTAAATTGTAAGAAAGTGCTGTGTTAT 55127 36 100.0 30 .................................... GTTGTGTTTTTTTAAGATAACATGAAAGAA 55193 36 100.0 30 .................................... TCGTTCGATTGCCGGAGCGACACCGCTCAC 55259 36 100.0 29 .................................... CTCAATGAGTGGTTTCTGGGTTCGACTCC 55324 36 100.0 30 .................................... TATTAATTTATTAAGAAAAGATGATACATC 55390 36 100.0 30 .................................... TTCAAGTCCTTTATTGATATAATCATTTGT 55456 36 100.0 30 .................................... TTTATCTGCCCTGTAATGCTTTGACCGAAT 55522 36 100.0 30 .................................... TATAGGGACTCCTACAGCAATCACAATGGT 55588 36 100.0 30 .................................... AAGGCGTGTCAGAGACAGCATAGGCGATAT 55654 36 100.0 30 .................................... AAAGTGCAAAAAACCCCGGCGCAGTCTTTA 55720 36 100.0 30 .................................... TAAAGAATAAGATATACTCAAGTAGTACAT 55786 36 100.0 29 .................................... CGTTTTTGCTTGCAAACGGTCGTGTTGTT 55851 36 100.0 30 .................................... TGCAGTATCTGCAACTGTAACAGGAGGTAT 55917 36 100.0 30 .................................... TGCGCGTTATGATGAAACGGCGCGGGGTAT 55983 36 100.0 30 .................................... AAAGATGCTGACCTGTCGGCTACGGGGAGA 56049 36 100.0 30 .................................... TGCGATCCGATCATATAATTACGCTTAAAC 56115 36 100.0 30 .................................... ACCTAGGTACTCTATTTTCGTCCCGAATTG 56181 36 100.0 30 .................................... TGTATATGGTTCAGTGAACGTAACGTCAGA 56247 36 100.0 30 .................................... TTATGAGGATATCCCTGGGAGACTGCAGAA 56313 36 100.0 30 .................................... AAGTGATCAGGCAGAAGAAATGCCGGTTTT 56379 36 100.0 30 .................................... CATGAAGCAGAACGGCTTCACCGACCCTAT 56445 36 100.0 29 .................................... CGGAAAGTGAATTTGTGAAGTTCGCTGAA 56510 36 100.0 30 .................................... ATTCTTAACTTCAAAAAGTGTCTCATATTT 56576 36 100.0 30 .................................... CATCACTATCCATTTGAGAACAAAGATGTA 56642 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 100.0 30 GTTGTAATTCCCTGTTATCACTTGGTATGATATAAT # Left flank : CAACATTGATCGTACGATCAGAAAGATTCCGTTCCTTTTGAAGGATCTCAAGAAACCGCCGCTGATCTTTGTAAGAGACCTGTGAAGGCGTTTTGTGAAGGGTATTCCCGATATGATCGAGATAAGTAGAAATATAAGTCTGGTAAGATTTCATTGTATGGTCGGTAAGACCACGAAGAGAAATCATTTTTTGGTAGCGTTTTAAATAATCCATGAAATAACCTCCTGAAATAAGTGAAAGATAAAGTAACATCACAAAAACATGTGGTGATCTGGATAAAAAATAAGATATGTAATTGTTAAGTCTAAAAAAACATGATAAAATACGCATAGCAGTTTTGGTTGTTATGTGGTTGTTTGAGTGTGGTAACTTAACAATACAACATAAATACAAAAACTGCTATTTTTTTATAAAAGTGGTAATTTTTACGTAACTGGGGCTAGCCGTCGCGCTAGCGACTTGGTACAATGCACTTAATGAATCTGAAAAAGTTGCAGAA # Right flank : TTAGGGAACACAAATCCCCACGAAACACAGGGATTCGTGGGGATTTCAGTTCAAAAAAATATTTAATTTCAGAGTTGAATTCTATCAAAAATCTTCTTTTTTCAAAAAACATCTAATAATTCTATCGATTCCGGGGTATCATCGAATGTCTTTGTTCCCAGCATAATTTCCATAGACTCATACTGTTTTTCTGTTAAGACCAATACACGCACCGATCCTTTTATGGGTAGATTCAATTTTAAACGTTGCTTATGCATTGCGACTGCATCCATACCATTGCAAATTCTCGAATATACAGACCACTGTACCATATGATAGCCGTCTTTCAATAAAAATTTACGAAATTTTGCGGCATCTTTTTTCTCTTTTGCAGTTACTACAGGGAGATCAAAAAAAACTAACATTCTCATAAATTTATTCATAACTATGTACCTGTAATTGCATCAATTCGGGCAACTCCAAATCGGTTCTTTTTTCCTGCAAAGCACTGCTGTAACTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGATATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 83574-82846 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHS01000006.1 Roseburia sp. AM23-20 AM23-20.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================== ================== 83573 29 100.0 37 ............................. TTACAGCGTCCAAATTTTCATTGAACATTTCAAGTGC 83507 29 100.0 44 ............................. TTATGTGACAGATTCGTAATACTATTTTTAGCAGCATCTAATTT 83434 29 100.0 36 ............................. TTTTCCAATCTTTCCATCAAGATGGAATCTTAACTC 83369 29 100.0 42 ............................. CTGTTGCCAATCCCTGAAGATCTACATCGACAGTTAAGTTGT 83298 29 100.0 44 ............................. TACTTAGAGGCATATATATAGGTGTCATGCACATACCTAGTCCC 83225 29 100.0 36 ............................. ATTTAATATTTCTACTGTGTTATCATGATTGGAATA 83160 29 100.0 45 ............................. CATCAATTATTTGCAGCATTGCATTTTTCGACGCAGCCACTTCAA 83086 29 100.0 42 ............................. TATAACCACTTATGAACATCATCATCCGTCCAATCTCCACGA 83015 29 100.0 37 ............................. CCTATGCCACAAATTCCCTTTAATGTTCCTAAAATAC 82949 29 93.1 46 ........................AG... ATAAATCCGTGACGGTTGTTTTGCCTTTGCAATCTTATATTTACAT 82874 29 75.9 0 ..A.........A..A.CAA......T.. | ========== ====== ====== ====== ============================= ============================================== ================== 11 29 97.2 41 GTTTTACATTACCTATGAGGAATTGACAC # Left flank : CCGGAATCGGGTTCTCAGAGGATATCAGACCGGTTGAACTGGCAAATTTGTTACATGAAGAAATGAAAAAGACAGAACCAAAGGACGAACAGGAGAAGTATCTGTTTTCCATGTTGAAGGATTACAAACCGACAGAAGAGTACGATGAACAGATGAAAGAACTGCTGCTGTGGGGAAAAGGGGAGCAGTATCTGTGGACGGTGACAGTGCCGGAACAGGGATAGACACAGAAAAAAGTCCGTCGACCTCAAAGCCACTGTTTATAAGGCATGAGGGGATTTTTTTGTAAGTAAAATCACGGATTTATCAGGAAAAAAAAGAAAAAATCGTTCTAAAAGTCCGTCGATGTCAGTAGGTTTTTTTAAAAGAGCAGGAAATATTGGATTTATGCGGATTGCATGGTTTTTTAGAAAATAGGTCGACGGACTTTTTTGAAAAAAATGGGTTGAAATAAGGAAAATTTGAGAGTATGATATGTAAAGAAGCTGATAAAATCAGTT # Right flank : TGAAAATATTGAAACGAGTTTTACGTTCCTAATTAATGTTTATCCCTGAACAAAGGAGGATTGACGTATGGAATTAAGTATTGGTGATGTCCTTTCAGATGATAATATAAATACTGCTATGGAATCTCTGATGGAAAAAAGAGATAGTTGTGGCGTTGATGGGGTAAAGTTATCGGAATTGCCAGTATATTGGAGCGCAAATGGAGACAGAATAAAAAAGGCGATACTGGATGGAATCTATGTACCGGGCATGATCAATCAGATTGAAATTATAAATCAAAAGGGAAAACATCGTAAGATTTCTTTGATGAATTCGGTTGACCGTCTTATTTACCGTGCATTATTTCAGAAAATGAACCTTCTTTGGAAAAATGAATTTTCTGCCTGTTCATATGCTTATCAGGATGGAAAAGGGGTATTGGCGGCTGTAAAACAGGCAGCACAATACATAGAAGAGGGGAATATATGGTGTATTGAACTTGATATACACAATTTTTTTG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACATTACCTATGAGGAATTGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.70,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 109176-108779 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHS01000006.1 Roseburia sp. AM23-20 AM23-20.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 109175 36 100.0 35 .................................... AATTCAATTACCTTTGCTAACTTCTTCATAGACAT 109104 36 100.0 39 .................................... ATTCCTGTGTCTTTGCATAGTTGTGTTTTGGTTATTTTT 109029 36 100.0 36 .................................... ATATTCTCCCTTCTGTGCAATAAAAAAGACAGCCTA 108957 36 100.0 34 .................................... TATAATGTCCGTATTCATTGGTTTGTTTTTTGAA 108887 36 97.2 37 ....................A............... TTGCCTGACTTATCTGTATAGTTAAAATCGGAGAATT 108814 36 97.2 0 ....................A............... | ========== ====== ====== ====== ==================================== ======================================= ================== 6 36 99.1 36 ATTGAAATATAAGAACCCCGTGGAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCGGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACGGTTTTATATCCATTGCTTGGCAGTAATGCGGTAAAAGTCGTGGATAATGTGTTTAAAAATACACTGGGAAAAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATAACAATTTTGCGCCGATAGGCTTAAAATCAGGCTTTGTGATCGGTATGATCCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATGAAAGCCTTGTGTTTGGAGAGGTGTAAGGGACAGG # Right flank : CTTTAGCTGTTTTTGTTATATACTTACACAAGTATAATTGAAAAAATCTTCAGTAAGGGGACAAATAAAAACAAGGGAGGAAACACATGAGTTATCTTTATGTCAGTGAACAGGGTGCGAGTATCGGGATAGAAGCAAATCGTTTTCAGGTAAATTACAAGGATGGAATGATAAAAAGTATTCCAGCTGAGACGTTAGAGATGATCGAAGTATTTGGCAGTGTCCAGATTACGACACGCTGCCTGACGGAATGTTTAAAACGGGGGGTGAATATCCTGTTTTATTCCACAAGCGGGGCGTATTATGGAAGGCTGATCTCAACTTCCCATGTGAATGTGCAAAGACAGCGTATTCAGGCGGAAATTGGACACAATGAAACATTTAAACTGGAAATGTCAAAAAGAATCATTGATGCAAAGATCCGCAATCAGGTTGTTGTTTTGCGCAGATATGCGCGAGGCAGAGATGAAGATATTCATAGAATGATCATTGAGATGCAG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATATAAGAACCCCGTGGAGGGGACGAGAAC # Alternate repeat : ATTGAAATATAAGAACCCCGAGGAGGGGACGAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //