Array 1 276704-277334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASIM010000001.1 Parabacteroides distasonis strain K33 scaf_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 276704 36 94.4 30 .......T.G.......................... GAATTTTTTTCCGCTGACTTTGCTTTCTTC 276770 36 94.4 30 .......T.G.......................... TTCTCCCACCTAGGGGAGTTGCTATACATT 276836 36 100.0 30 .................................... TGCGCATGCGATCACGGGTTTCATGACACG 276902 36 100.0 30 .................................... GATGTAGTTTTGCATCAACTCGAAAGGCAA 276968 36 100.0 30 .................................... TCACTTGCTGTATCCATGATTTATTGGTAT 277034 36 100.0 30 .................................... TCGTAAAAAAGTAATCTCTCCCGTAAGGAT 277100 36 100.0 30 .................................... TACTTTGTAATAATATAATTAGTAATTATG 277166 36 100.0 30 .................................... TGACGTTCATCTCGGATAAATCGAGCAGTT 277232 36 100.0 30 .................................... TGCCGTAAAGCATAAAAATAATCCTCGAAA 277298 35 80.6 0 ................-...C.........A.TGTT | A,A [277323,277326] ========== ====== ====== ====== ==================================== ============================== ================== 10 36 96.9 30 GTTGTTTCTACCTTTCAAACTAAAGGCTAATACAAC # Left flank : GCAAAACAACAGGTAACTTGAACCTTATTCGGTTCGCCTCATTTCCATTGCTTCCTTCTTTGGTTGAAGCGCCTATACCTACTACACTGGCTAATACACCGATCTTTCCGCTATTTTCCTTTATTTCAGAGGTGCTGACTTGTAGATCAAACTCTACTGATGAAACAATAACACCTTCACTATTGTCTATCGTCTCAAAGTTTGTATTCTCTGCATAGCATGGATTTACCACTACTCCTTTATCTTTCAATTCATCATCTAATTCATAAACAGCTTCCGAAAGCTGGGTTATAGCGGATTTAATAAATTCTTTTAGTTCCATAAACAACAAAGCCCGCATTTCAGACCGGCCATGATCCTACTTTGCGGGCTTTTCCTTCAATGAAGTTTATCTTTTTCAAATATCTCGCATGGCCTCGATATATTTGATATCTAATCTTTTTGTAAAGATAGAATAAGTTCTTGATGAATCCAAATTATTTTCGGATAGCCATGCCTGT # Right flank : TTTTATGCTGATGAGTCATTCGAAAGGTCTTCTAATTTTATATTTTCTATCTTCATTTTAAATTCAGCTATAATCTTTTTTGCATATACGAAATCGTCAGAAATCTCTTTGATACATTCAGCTTCGTATTTATCATGTAAGAACATATTCCGAGTTTTAATGAGAAAAGAACTATCTATCTTTTGTTTAGTTCGTTTCTCATATTCTGTAATTAGCTCATTAAAATCATAATAATTTCCGGGAGTAGCCTTCTTTAAATCTGGGAACATCGATACCATAGCGATTTCGAAAGAATGAATGATAGGTATGATTTGTATCTGGGCTTCTTCGAAATCTAGGCATTCTCTTTTATAATTTTCATAAGGTTGAATCTTTACGCTAGAAGATATACTATTGTTTCTTTTGACTTTACTTAATACTTTATTCAAAGAGCTGATTCTTGTATCATGATGTATATAAAATAACTTTCCGTAGTCTTTTATCTTGATATCTTCTCCTTG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTTCTACCTTTCAAACTAAAGGCTAATACAAC # Alternate repeat : GTTGTTTTTGCCTTTCAAACTAAAGGCTAATACAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 37517-35782 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASIM010000010.1 Parabacteroides distasonis strain K33 scaf_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 37516 47 91.5 30 A......C.......................GA.............. TTCTCTGCGTTTTGGTTCAATGCGATTGCA 37439 47 100.0 30 ............................................... TATCGTATCATAAGAAAGAGCGGACAAATT 37362 47 100.0 30 ............................................... TTGCTATCAACCGCCTCCTCTCTGTCTATA 37285 47 100.0 30 ............................................... AATCAAACTATTTTATTCACTTTGTATCCT 37208 47 100.0 30 ............................................... AAGGCGATCCAAAGCGTCTATCTTGGAATA 37131 47 100.0 30 ............................................... GAACAGGATCATTAGATAATCCTGTACGGA 37054 47 100.0 30 ............................................... ATCGACTTCAACTACTGGTAATGCTACTGA 36977 47 100.0 30 ............................................... AGAGTCACGTCTATGGGGTGTGGCTCTTTT 36900 47 100.0 29 ............................................... AATTCGATAAGCATACCTTCCTCACGTGT 36824 47 100.0 30 ............................................... CTTTATTCTCGTTCGAGGATTTGGTTAAGA 36747 47 100.0 29 ............................................... GAAATCATGAGATTAAGACAAGCAAAGAA 36671 47 100.0 29 ............................................... GCCATAGCCTTTATTCCGGTAGGGAACAG 36595 47 100.0 30 ............................................... ATGTCGATCTGTAAACATTTGTTTTATTGT 36518 47 100.0 30 ............................................... AGAGATATAGGAGCAAATGATACTATCTAT 36441 47 100.0 29 ............................................... GACATAGTCGTGAATATCCTTGATCATTT 36365 47 100.0 30 ............................................... TTCTTAGGGCAAATATCCCCTGTTGCAGGA 36288 47 100.0 30 ............................................... TGAATGCGTTATATGAATAACAAGTGTTGA 36211 47 100.0 30 ............................................... CCCCTTGCCGCTGGGCGCTCCCCGACCGAT 36134 47 100.0 29 ............................................... CATCTCCATTGATTTAATCCAAAGATTCT 36058 47 100.0 30 ............................................... TATCCAAACGCATACCCAATCAACACATTT 35981 47 100.0 30 ............................................... CTGAAAAATCAAAATTAGCATCCTCCTTCA 35904 47 100.0 29 ............................................... ACTTTGTAATTTCTGAGCGTTCACCCTTT 35828 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 23 47 99.6 30 GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Left flank : TCTAAACGCTTGGAGAATCGATTATTTCGAGGCAAGGTACGACTTGCTTCCAAATTCGAAAATATTTTTTCACAATAATCTATTGAACAACGCATTACAAATTTTCACTGATTTATTCTAGCGAAAGATTTCGTCTTCTGTCAACCTCAGTCGGACAAACAAGCGACTTTTTATCTGAAAACAATAAGCTTTTCATCCGAAAACAATCGGATTTCCGGTCGGAAACAATAAGGATCGCAGTCGAAAACAGCATACAACGCCGTTATAAACACCTTACTATTGGATCATAATCCCTCTACAAAGCCTATTCATACACTAAAAAATGGCGAAATACGCTGTTTCCGCCTTCCTTTTCTCTCTATTTTCGCATTTCCATAAAAAGCCTTTATCAGCTAAAAGTCTCCATTTTGAGCAAAATGACAGAAAAAGAGATATTTTGATGACATAAAAGAGAATGGCTTACTTTTTGGTGTAGCTGCCCCAATATTTTGCAATATTTT # Right flank : ATATTATCTATTAAAAACTATTAATCAATGGATTACAAAGCACATCAGAATAAAAAAAACAGATATTGTTTCCATTAAAAATCCCGCTTGACAGCGGGATTTTTCTTTTAGAACAACTCCAATTGCTGTCCAGGAGTATTCACTTCCACCGTTTTCTTTCCATAAAAAAGTTCAATATTCCCAAACTGCTTATCCGTAATACACATGATTCCGACATTCCCATGCTCCGGAAGAAAAGATTTAACTCTTTTTACATGTACGGCCGCATTCTCGCTACTAGCACAATGGCGGACATAAATAGAAAACTGAAACATCGTAAATCCATCTCTTTGTAGATTTTTCCTGAAATCCACATACGCCTTTTTCTCCTTCTTCGTCTCGGTAGGCAAATCAAACAACACAAGTACCCACATAACACGATATTCGCTAAACCGATCCATATTACATTTCCGGATAGGAGATTCTACGCAATTCGCCACTAAAGCACTTATACAGAGAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: R [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 403743-404105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASIM010000002.1 Parabacteroides distasonis strain K33 scaf_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ========================================== ================== 403743 39 92.3 42 ..C..CG................................ ACGAGTTTAGAGCAGTCATTCAACAACTCTGAGGCATTCGTG 403824 39 100.0 42 ....................................... GTGATATTGGTGCAGCCAGACAGCATATTTCTGACGTTATCA 403905 39 87.2 42 ..T..C.T...T...........G............... GCCAAGCTGACACAGCCATGCATAAAATAATTTGCGTTAAAC 403986 39 100.0 42 ....................................... GTGATATTGGTGCAGCCATACAGCAACCTTGAGGCATTCGTA 404067 38 82.1 0 ..G..C...A..C.-.....A.................A | T [404078] ========== ====== ====== ====== ======================================= ========================================== ================== 5 39 92.3 42 ACATTAACCCACGATGCCAGCGGAGTCAGATCAACCGAG # Left flank : AGATCGTCGGGAGGTTCGGTGGAGGCATCGGCGGCTATCATTGGCCTCACCGCTTCTTTCATATCGGTATCCTCGTCAAGCAATACGGTCTCGGCGGCTACCGGATCGTCGATCTCCTCATAGTGCCCGGGGAGTTCTTCCAAGGGGGTATCCAGCCTCTCGCCGCCTAGGTGATAGGTCTTGCCCAGATAGATTTCCGGTCCGGCTATCCATCCGTCACTGATACGGCGGAAGACCTTGCCGTCCTCCGCTATCAGATGCTTGTTGTTCGATTCGTCTGTTCTCATGACTCCGTTTTTTCTGATATGGGTTTGATACGACTTGCGTAAGCGGACCAGTTCGTGGCCATCTTATAGGTATCTACCGCCTCGTCCGGCACGTAGATCGGACAGGAGTTACCGTTCGTCAAGGCTCCGTAGGAGAGGGTGAAGGGAGTAGTGGATAGAACGCTGATAAAAATCAGCTTGGAGCAACCAACTATCAATGATGAATTGTAGATT # Right flank : AGTGATATTGGTGCAGCCATACAGCAACTCTGAGACTTTAGTCCTTTTTTTATCATTCTTAAAAACATTTCCAAAATAGATCAATTTGGAGCATTTATAAAACGTGATATCAACTACGGTGCTATCACCAATACTCCAATATGCAGCGAGACATGAAGTTGATCCTATGGCGTATGTTACATCCTCACAAGAAAGTATTTCGGCGTTATGATAGCCGTTATCCGTATAGGTATGGCTATAGGACTTAGATCCTGTTCCCGAAGCGTTTTCTGTCGTACCATCCCCCCAGTCTATCACATAGGAGGAGGTAGGAGAAGTGACGCTGATAGAGCAAGATGTACCGACCAACATCATTTGTATGTTCCCGTTTTCCTCTGGCTTCAAGATTACAGGGTTTAAGACGATAAAGACATTGACGCTCATAGCAGACGTTCCGACCGTTACCTGCCCTTTATAATCAAAATAGTTAGGATGCGTAATGTCATAGTCATACGTTCCCT # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACATTAACCCACGATGCCAGCGGAGTCAGATCAACCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //