Array 1 3947-5700 **** Predicted by CRISPRDetect 2.4 *** >NZ_SETJ01000038.1 Lactobacillus delbrueckii strain LDELB18P1 Contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 3947 35 75.0 38 .C.T.....C...G.G.-...G...T.T........ GCATAGTGCGGATTGTAAGTAGCGACCAGCTTTGTTGC C [3960] 4021 36 80.6 35 A..T.T.C......T...................AT GTGCAAAGCAGAATGAGTCTCCGTAAGGAATAAAA C,G [4050,4053] 4094 36 94.4 41 ....C..C............................ GCAAGTGGTTACTGGGTATCTGATGACGGGAAACTGTTTGA 4171 36 100.0 38 .................................... GCGCCTTTGGTCAATCAGAGACGTTGTGAACTTCTTTG 4245 36 100.0 38 .................................... TTAAAATTTATTTGATGGAAAAAGACAATGACAACCAA 4319 36 97.2 37 ..................G................. GAATAAAAATGACCACATTTGATATTTTTTGTGTCGT 4392 36 100.0 41 .................................... ACGATCTAGACTGCTAAAAAGGAGGAACAAAAAATGGAAAA 4469 36 100.0 38 .................................... GATGAAGCGGTACGCGATAAGATCGCGGAAGCAACCGA 4543 36 100.0 35 .................................... GGCTATTGGGTTTCTGATGACGGAATTCTATACCA 4614 36 100.0 35 .................................... TTCCCTATGACTGATGAATGGGCAATCGATTTGAC 4685 36 100.0 39 .................................... CGGTGAAAGAATGGGAAGAGGATGCAAAATGATTAGTAG 4760 36 100.0 37 .................................... TGACTACTAAGAAGGAAATCATGAGTAACGCTTGGAA 4833 36 100.0 37 .................................... TTCAGAGGGCGCGGTTATGGCGTCATGGAATGGTTTC 4906 36 100.0 37 .................................... AAACTTTGAGTGTTTTCACTGTTTACAATTTCCTTAA 4979 36 100.0 42 .................................... AGGAAAATGATTTCTTAACTATTTCCCGTATGTGTGTGTTTG 5057 36 100.0 38 .................................... AAGACAACAAACAGAAAAATAGGAGGGACAAAAAAATG 5131 36 100.0 41 .................................... TTGAATGATTTAGTTGATAGAACGGGGATGGCCCCGTGGGA 5208 36 100.0 39 .................................... TTGAGGAGTTTTGCTATTATATGCTGTAAAACTTGCAAA 5283 36 100.0 43 .................................... ACGCAACCGACTGTGAGGACTACGAAAAAATGTTCGCTTGGTT 5362 36 100.0 39 .................................... CCAAGCAATCTCGATTTTCGATTGTCCGGCCGACTACCG 5437 36 100.0 41 .................................... GGCCGCTTTGGGGCTGAACCTGTAGCAATTATTGAAGGTTT 5514 36 100.0 42 .................................... ATTAGGAGGTACAAAAATGGATTTAAAAGATGTAATCAAAGA 5592 36 100.0 37 .................................... TCAAACGATCCATTTAATCGTTTACCGTTAGCCGTGA 5665 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 24 36 97.8 39 GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Left flank : ATGGTTGGCAAAAATCCGCACGCTGAAGCGTTTGATCGCCCGGCAGACTTGAACTAGATAAAGTAGCGATAATTGGATTAAACGGTTGGCCAGGATCTTATGGTTCAGCAAGTCATACAAGCCTTGGACCAGCTGCCCTTGAAAGTATGGTCCAGCGACCATGCCGATATTGTAGATCAAGCCTGAAATAGTAACGACCACAAGAATTGGCGCTTCTTACCAGAAGTAGCTGCTCATTTTCTTGGGGTCGCGGGTATTTTCTGCTTCATCTCGCTGCCTCCTCTGACTGCAATTTTGCCCGCTTCTCTGCATCCGCTATCAGCATTTCCACCTTCATCATAGCACCGATTCTTCTTCAGTCTAGTCCATTTTGGACGGAATGAAGGAGGTTTTTTATACGAAAAAACGGCCAGCAACTGGCCGTTTGGCTTATGTCTCCTTTTAACGGAGATTGTGCATTGAAAATAGATTGATTAATAATATAGCTCTTTTCTTTAAAT # Right flank : CAGATCCTGTTTAAAACGTTATTACGTCGCGCATCCCCAAGCATTTGTCTCGTCTAAATCCTGGTCAACGCCCATCAAACAGCATCCCTTTTTGTCCTATTTTTGGACAAAAAAGGCACCTCTGCTAATTGAGAACATATAAATTATACCACACCAGATGCTACACCACGATCACCTTAGGTACTGAGACTGCCTTCATTGGTGCGTCTGGACCCAAAATGTTAATCTGCTTGTTATTCACCTCATCTGGCAACAGATATAGAGTTATCATTCCATCATCTGGAACTTCTTTTTTCAAAATCCCAATCAAATGGTCTTTCGTAGTATCTGACTCCACCTCCCGTTCATACAGGCTGTACTGCTTCATGTCAAATCCCAACTCAACCAGCCGTTTCCTGTATTCCGCGGCTTTCTTTCGCTCTTCTTTGGTATTTCTAGGCAGATCAAAGCTTAAAAGAAGTACCATCATTTTCCTCCTTGAATGAAAGTCGGCAACTTCA # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCGTCTCCTTCTAGCGGAGATAAGTTGTTAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 16568-24098 **** Predicted by CRISPRDetect 2.4 *** >NZ_SETJ01000029.1 Lactobacillus delbrueckii strain LDELB18P1 Contig_29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 16568 28 100.0 33 ............................ TTAATAAAGAATTGACTAAAACAGGTACCAAAA 16629 28 100.0 32 ............................ TAGCCTTTGCCTTGGCGTCGGTCATGTAGGCG 16689 28 100.0 33 ............................ TACTCAACTGATCTGAAACAACTTTGAAGAACT 16750 28 100.0 33 ............................ CAAGCTGCTGGGTGTGTTGAGAAGCTATAAGGA 16811 28 100.0 33 ............................ GAAAGGGGAGTCAAATAGTGACTATGAGTCAGC 16872 28 100.0 33 ............................ TGTGACTTTATCGCCAGCCTTGAGAGTTTCCAA 16933 28 100.0 33 ............................ TTTTCTGTTTTCGTTGTCTTGCCTTTGACGCTT 16994 28 100.0 33 ............................ TGTTAAAAGATTCTACTAGAGAAGCGATCGCAA 17055 28 100.0 33 ............................ CACCACTGGAATTTCTGGAGGAATCGTCAGCAG 17116 28 100.0 33 ............................ TAACTTGATTGGTTTGTTCGTTTTCACCGTAGG 17177 28 100.0 33 ............................ CAATCAAGCCGTAATTACTAGCGGGCAACTGAA 17238 28 100.0 33 ............................ TCACCGCTCCCGTCGGTCACGTTGCCCAGCAAG 17299 28 100.0 33 ............................ TTGTTAAAAAGTACGGTACTTGTTTATGGGTTG 17360 28 100.0 33 ............................ CGCCTACAGCGTCCGGGTCTGTAAAGCCGTCCC 17421 28 100.0 33 ............................ TTAAAACAGGCTTTTGCCGGAGGTTTCACGCAT 17482 28 100.0 33 ............................ CCCTTGACGCTTACTAGTATAGCATGATCCCCA 17543 28 100.0 33 ............................ TGGTTGACTGCTTGTCATTCTCCGTTGTAGGCT 17604 28 100.0 33 ............................ TTTTCACCAATTAATTGAAGATAATTGTTGAAG 17665 28 100.0 33 ............................ CTGCTTAGCGTCGTGCTTGTAATGTCTTGCAAT 17726 28 100.0 33 ............................ TGCAAGTAAGACATGCAGCCAAGCAATGCAAGT 17787 28 100.0 33 ............................ CAGCCCAAACCAAAAACCCCTGAAAACTGATCA 17848 28 100.0 33 ............................ CATACCTAAACGAAAGGAGGCAAACAGGAATGC 17909 28 100.0 33 ............................ CAACCGACACGGGCGTAGTGGTCTATCCGTCAA 17970 28 100.0 33 ............................ ACCCGGCCGGTGTAGGCGTTGATCTTGCCAACA 18031 28 100.0 33 ............................ TTTAGCCCCCCGTCAAGTTCTAAGAAAAAACGG 18092 28 100.0 33 ............................ TTTAGCCCCCCGTCAAGTTCTAAGAAAAAACGG 18153 28 100.0 33 ............................ AGAATAGCAGAAACGAAAACTTAATTAGAACTA 18214 28 100.0 33 ............................ TTTTTTCGCTTTTGCTGTAAAAGCCTTTAAAAC 18275 28 100.0 33 ............................ TGAGGCCGACGGCCAAGCAATCTCGATTTTTGA 18336 28 100.0 33 ............................ CGAGTACCTGGAAAAGGCTGGCAGCAAGCAGGC 18397 28 100.0 33 ............................ GAAAAAACAAGGAGGAACACAAATGCGAAAAAA 18458 28 100.0 33 ............................ TGATAAATTATTTTCCGTTCTCCGTTGTAGTCT 18519 28 100.0 33 ............................ CCTATGATCAACTTTTTGCTTGGATGGCTTTCG 18580 28 100.0 33 ............................ TGGTTTATGGGGCGGTAGAAACCGCCTGGAAGG 18641 28 100.0 33 ............................ TGGACATAAAGGCTAGCCACCACTGCCAGGGCA 18702 28 100.0 33 ............................ TTTCTTCCAATTCCATTTTTTGTTCCCCCCTAA 18763 28 100.0 33 ............................ CATACAAGCGTTTAGAGGAGTTTTATCGATCGT 18824 28 100.0 33 ............................ ATTAGCCAAGTCGGTTTTCCTGTGGTAGTAACA 18885 28 100.0 33 ............................ GGCTTGGCTTCGGCTTTAGGCTTAACATCACTG 18946 28 100.0 33 ............................ AGCTATGAAAGGATAAAAAATGATTGAATTGTA 19007 28 100.0 33 ............................ TCTAGATCCCCTACCAACTTTTCAATCTTATGA 19068 28 100.0 33 ............................ AAGTTGTTCAGTTCGCCCAGGAGGACTTTAGGG 19129 28 100.0 33 ............................ TGAGGCCGAACACAGCCAGGATGGCGGGGAGGC 19190 28 100.0 33 ............................ TCCTTTTTTATCACACATAGTTTTAAGCTTATT 19251 28 100.0 33 ............................ TTTTTGATTGCCCGGCCGACTACCGGCCGGAGT 19312 28 100.0 33 ............................ CAATGTATCGTTGCAAGAATATGAAACTATTCC 19373 28 100.0 33 ............................ CAAATTTTATCCCCCCGTCAAGTTATCAGAAAA 19434 28 100.0 33 ............................ CAGCCCCACGCGCTATGGCAGTTAGGGGTGGTC 19495 28 100.0 33 ............................ TTCACTCCATTAATTTCATAATTACCGTTAGTA 19556 28 100.0 33 ............................ TTACATCAAAAATCTTGCCAGCTGCCGTCTTAG 19617 28 100.0 34 ............................ ACCACTTGCCGCCCAATTGTGCCGCCATTCAGTT 19679 28 100.0 33 ............................ CCATTTTCTCATGAACTGAAATTCAAACGAAAG 19740 28 100.0 33 ............................ CAAATACCGGCCGTGTAAGAATGGCTGTGAAAG 19801 28 100.0 33 ............................ AATTTTTTCTGTTTTTCCAAAAATTCCCGCAAA 19862 28 100.0 33 ............................ CGTGCCAAAGATCAAGCTCTAGCTCTACTTTTT 19923 28 100.0 33 ............................ CGGAGCGAAAAAAATTTTTTAAAAAAGGCTTGT 19984 28 100.0 33 ............................ CTACAGCAAACAGCAAACAGCAAACAGCAACTA 20045 28 100.0 33 ............................ TATTTGAATATGGCGGCACAAGTGGCTCAAGTT 20106 28 100.0 33 ............................ GTAATCCTCCAGTACCAGCGGCTGGCTCATAAT 20167 28 100.0 33 ............................ GCGGACTGATGACCTGTTCTTGGTTGGCATAAA 20228 28 100.0 33 ............................ GACGCACGCCGCTGGCTCGTTGACGGCAACCGA 20289 28 100.0 33 ............................ TACTGAAACGTAGTAAAAGTTTCTAGGTTATCA 20350 28 100.0 33 ............................ TCATCAAGGATCAGACCGAAGGCTACGACTTAA 20411 28 100.0 33 ............................ TATCCAAAAAACACTTTCATCTACGTTTAAACG 20472 28 100.0 33 ............................ TGTTGTGAATGGTGCTAAGGCGGACAACACCAA 20533 28 100.0 33 ............................ CTGGTAAACGACACTAAGGTTGCATAGGAGGTT 20594 28 100.0 33 ............................ TACTATTTACGATAATTTTCATGATTATTTATC 20655 28 100.0 33 ............................ TCAAGTACGGTCAGACGGCTTTCACCTACTACA 20716 28 96.4 33 .......G.................... CTTGACGATACTCTCAAGTACGGTCAGACGGCT 20777 28 100.0 33 ............................ TTATTAAGCTAACTGAAGGTGACTTATACATCA 20838 28 100.0 33 ............................ CACGGCGGCGATCCTGGCCTTTATGGATGCGGT 20899 28 100.0 33 ............................ TCAAGCGCTATGTCGCTGTAGGCACCTTGACCG 20960 28 100.0 33 ............................ CACAGTTAACAAGTATAGCCCCTACTTTAAAGA 21021 28 100.0 33 ............................ CTGCGTAGGTAGCAAGCTGGCCGACCACGTCCA 21082 28 100.0 33 ............................ TCAATTGCGTAGTCCCACTCATTGAAAATTTCC 21143 28 100.0 33 ............................ TAATTTGTGTACCCTTACTTAGCACTAGAGGTT 21204 28 100.0 33 ............................ CTTTTACAACTACTTTTTTGTCGGCAAATATAT 21265 28 100.0 33 ............................ TTAAAAAAAGGTCTAGCATTTTGCTAGGCTTTT 21326 28 100.0 33 ............................ TACCCTTAAAGCCTTAACACGTAAGCGTGTAAG 21387 28 100.0 33 ............................ TTTCCCGAAAAATGAAAGCACTTTTAAATGAAA 21448 28 100.0 33 ............................ CTTAGTTTCAACCATCGTTAGACAACGTACCAA 21509 28 100.0 33 ............................ TTGCCGACATCATTATCTTGATAGAAAACTTTG 21570 28 100.0 33 ............................ TCTCTTCATTTCCCAGCCTTTTCTGAAACGTTC 21631 28 100.0 33 ............................ TGGCGTTTGGGGCTTTGACCTCGATTGGGTTGT 21692 28 100.0 33 ............................ TTTTCTGAGGAGTGGTGACTTTTTGGAAAAAAG 21753 28 100.0 33 ............................ TGTAGTTAAAGAGATCACGAAAAGCATGGATAA 21814 28 100.0 33 ............................ TTTTCCCGAATTGGGACTATGCAATTGATTCAG 21875 28 100.0 33 ............................ ATGGTGGCGTCAAGGCCTTCATTGACGAACTTT 21936 28 100.0 33 ............................ CATGGTTAAAGAATGGAACGGGGAATTCTCGGA 21997 28 100.0 33 ............................ TCATTAATATTCCCGCCTTGAAACTTTCAAAGA 22058 28 100.0 33 ............................ CATGTTGGATGATCTAGACTGCTAAAAAGGAGG 22119 28 100.0 33 ............................ TTATCAAGGATCAGACTGAAGGCTACGACTTAA 22180 28 100.0 33 ............................ TCGTCTACAAGATCATCTAGCCACTCCTCACAG 22241 28 100.0 33 ............................ TATCGTTGTATTCGGTTGACCCGGTTGCGGCTA 22302 28 100.0 33 ............................ TACAAACGGAGACAGTCAGCGTGCAGAAAATAT 22363 28 100.0 33 ............................ CCAACAATCGCATGTAACGGGCTACTGAGCAGG 22424 28 100.0 33 ............................ CAAAAGCGAAAAAAATTTTTTAAAAAGGCTTGT 22485 28 100.0 33 ............................ CCAAATAATTATGATTGCCGTTGGCGTCCCACG 22546 28 100.0 33 ............................ TGCTTAACATTTTTCCGTAAAGGTCAGCTGCCA 22607 28 100.0 33 ............................ TGACCAAGGCCGAATATGATAAAGAACGGGCTA 22668 28 100.0 33 ............................ CAATGATAAATTGCCTCATGATGCAGTTCGGAT 22729 28 100.0 33 ............................ TACTTGGTTTGTCAAATTATGTTTAATGCTTGG 22790 28 100.0 33 ............................ AATGGTGGTAAACTTTTGAATCCCGCTGATAAA 22851 28 100.0 33 ............................ TTTCTGGCACGTTGACTGGGCTTATGCCTACAG 22912 28 100.0 33 ............................ TGGGAAGAGTAGGATTAAAATGAGTTTAAAAGA 22973 28 100.0 33 ............................ TGACGTCGACGCGTGGTCTGATCAAGATGAAGC 23034 28 100.0 33 ............................ TGTTTGAGGAGTATTGCCGTTATTTGCTTGAAG 23095 28 100.0 33 ............................ TTGAGGCCTTCAATTTCATCAATGCCAGGATAG 23156 28 100.0 33 ............................ TACGGAATGTAAAAGGAGCCTACAATGCTAGAA 23217 28 100.0 33 ............................ TGAGTTAAGTATTATCAAGGGCTTTGATGAGAT 23278 28 100.0 33 ............................ TATTTTTTCTCCTTGTACTCTTTATCATAAGTA 23339 28 100.0 33 ............................ TTTTGGGATCAATTATATAAGGCACAGGACATG 23400 28 100.0 33 ............................ TAATTGCTTGAATCATTTCATCATTGTCTAGGA 23461 28 100.0 33 ............................ AAAGTAAGGTCCACGGTGGCAAACCAGGAATTA 23522 28 100.0 33 ............................ TGCAAGCACTTTCAAAAATACTTATCACGCTAT 23583 28 100.0 33 ............................ TCACGAAAAACATGAAAAACCCTTGCTTCACTG 23644 28 100.0 33 ............................ TTAATCCATTCTTGCGGCGGGGGTGCTTGATAG 23705 28 100.0 33 ............................ TGCGAGTTTGCGGATCGCTTTGAGTACTGGAAG 23766 28 96.4 33 A........................... TTAGGCTTCTTGGATGAAAAACTGGTCAGTGAG 23827 28 100.0 33 ............................ CATCCATTATCACCCGTTTTTTGTAACCGCCTA 23888 28 100.0 33 ............................ TGGGACTAGACAATGTGCTGAACATGGAGCAGG 23949 28 100.0 33 ............................ CTTATACTAATGCTTCTGCTTCATCTTTCCATT 24010 28 100.0 33 ............................ TAGCTCGTCTTGAACAGCATTTAGTAAATCGCG 24071 28 85.7 0 ............T.T.......CA.... | ========== ====== ====== ====== ============================ ================================== ================== 124 28 99.8 33 GTATTCCCCACGCAAGTGGGGGTGATCC # Left flank : GGATTGAATACGGAAAGTGATCAGATTTTGTCTATTGGCGCGGTGAAACACGATGGTACAGAATTCTACCGACTGATCAAGCAAGATATTGATGTGCCAAAACAGATAGTGGAGCTGACCGGGATAACTCCAGCAATGCTGGATAAGGAAGGCGTTCCACTGCAAGATGTTTTGGGAGAACTAACTGACTTTGTTGGGGATGTGCCAATCGTTGGGTATAATTTTAGATTCGATTCTGCATTTTTGAATAGGGAATATCGGAAATGCGGGATGCAAGAATTAAAAAATGAGATCAAGGATTTGCTGCCAGTTGTAAAAAGAAAAGAAAAATTTCTGGACAACTATAAGCTACAGACTGTATTATCAAACTACGGGATCGAAAATAAGGTGCCGCATAATGCTGTGTCTGACGCAAGGGCTACGAAGGACCTGGCGATGAAACTAATCAAAAATCGCATTTTGGTGATTTGAGAATGGCGTCGCTAAAGGGATCCATTACT # Right flank : CGTTCTTTATGTTATTGTGCTTTTCGTACTGTGTATTTTCCATACATATGCCGCGATGATCATAAGTTTCAGTTAAAGCACAAGCAAATTTCAAGGATCTTTGGTAGAGTAGAGGTAATAGGGAAGGAGTGAGGAACAAGCGTGAGCATTTACGGAAAGTATGCCGACTATCTTCCACAGATCCTGGATTCTGTTTTGCAGCAAATCCAAGGCATCGGTCAGGAGTATAGTGCAAAACACGGCCAAAAGCTATATGGGTACCTGGAAGGTCGCGTCAAAGGAGAAGAAAGCATGACGCAAAAGTGCGAGAGAAAAGGTTTGCCGCTGACGCCAGAGTCTGGATTGATCGAAAATCGAGATGCGATCGGCCTCAGAATCGTCTGCAACTTTATTGACGATATCTACACTTGCATTGACTTGTTGAAGAAGCAGGACAACTTCAAGATCATTAATGAAAAAGACTACATTACCGATGCCAAGCCAAACGGCTATCGGTCATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGCAAGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCAAGTGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.30,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //