Array 1 1-576 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUB01000038.1 Lactobacillus acidophilus CFH contig_20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 27 93.1 32 --........................... GTTTACAACATCATGGTTAGAGCAAAACTTGT 60 29 100.0 32 ............................. GGGTACCGAGGGTGGCAATATCTTCCTTATTT 121 29 100.0 32 ............................. ATATACATAGTTGTTTGTTTCAAAAATTGCCG 182 29 96.6 32 ............................C GGAATGTATGATAAAAATTGGCTATTTGCCTA 243 29 100.0 32 ............................. ATTGATGCAACACCTAGCGCAAGTCAACCTGG 304 29 96.6 32 ............................C AGGGTGGTTTTAAGTACGAGATTGACTACGAT 365 29 100.0 32 ............................. GGCGAGAAGCTTATGAAGATCCTAGGAAAAGG 426 29 100.0 32 ............................. ATATGCGACTTATTTCTTACGATGAGATTCCA 487 29 93.1 32 ............A.A.............. CGATGGTAACTCTGTAGCTTTTAGAGCCTTTT 548 29 75.9 0 .....T..T.T.A.A........A.C... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 95.5 32 ATTTTCTCCACGTATGTGGAGGTGATCCT # Left flank : | # Right flank : TGAAGCACAATATTTTTAAAATAATTGGGCAAGATTTTCTCCAAAAAAGTGGAGCTACATTAACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAAT # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : ATTTTCTCCACGTATGTGGAGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 202-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUB01000113.1 Lactobacillus acidophilus CFH contig_478, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 201 28 100.0 33 ............................ CGGGTAAACAAGTCAGAGTTACTCGCAGCAAAT 140 28 100.0 33 ............................ TTAGGCGAAACCCCGAGAGCAATTTCAAGCACG 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : GTATGTGGAGGTGATCCCTTTGGCCATCTTCGGTCTTAAACTTAGCTAA # Right flank : CTAAAACGTTGAAGCTTATTGTCCGCTTTAACGTATTTTCTCCACGTATGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 53-871 **** Predicted by CRISPRDetect 2.4 *** >NZ_AYUB01000088.1 Lactobacillus acidophilus CFH contig_143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 53 27 100.0 34 ........................... TGAAGAATTTTATCTTCTAGGTGGCTTTTTTGTG 114 27 100.0 34 ........................... TAGAAATATTTGATTTTGATAGTGAAAAAGAATA 175 27 100.0 34 ........................... TTCAAGATCAACCATTCATTTGCCACGCAAATCG 236 27 100.0 34 ........................... TTATTTTCTGGTGTGAAAAATGCTGATGATATTG 297 27 100.0 34 ........................... CCCAAGATATAATTAAAAGAAAATATCGTAGTCA 358 27 100.0 34 ........................... CTTTGATTTGAGTTAAGTACCGGTGCATCAATGA 419 27 100.0 34 ........................... CTCTTTAATGTGACCAAAAGCGCTCGTAGCAGCA 480 27 100.0 34 ........................... CGGACGCAAAAGGGCAGAAAGCTAATTTATGACG 541 27 100.0 34 ........................... CTTGCTATGTCCGCTCTTGCTTGCATTGCAGTCA 602 27 96.3 34 ............T.............. CCCACGCCACATATTGTGTGCGGAATAGCCTAAG 663 27 100.0 34 ........................... CTCTGCCAAAATAGTAGCCGAATCTGGAAAATCA 724 27 100.0 34 ........................... CAAAGTGTCACAAAACTAGCACCTTTCATTAAAA 785 27 100.0 34 ........................... CAGAGTTTAGTCGTCGCAATGTGTGTCTCAATGA 846 26 96.3 0 ..........................- | ========== ====== ====== ====== =========================== ================================== ================== 14 27 99.5 34 GGATCACCTCCACATACGTGGAGAAAA # Left flank : CACATACGTGGAGAAAATAGCTATCCAAATATTAAATTTGCACTAGTTAAGGG # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGATCACCTCCACATACGTGGAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //