Array 1 171286-173389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMZ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171286 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171347 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171408 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171469 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171530 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171591 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171652 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171713 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171774 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171835 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171896 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171957 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 172018 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172079 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172140 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172201 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172262 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172323 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172384 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 172445 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 172506 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 172567 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 172629 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 172690 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 172751 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 172812 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172873 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172935 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172996 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 173057 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 173118 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 173179 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 173240 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 173301 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 173362 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189897-191634 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMZ01000003.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189897 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189958 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 190019 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 190080 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 190141 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 190202 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190263 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190324 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190385 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190446 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190507 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190568 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190629 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190690 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 190751 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 190812 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 190873 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 190934 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 190995 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191056 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191117 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191178 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191239 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191300 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191361 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191422 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191483 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191544 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191605 29 93.1 0 A...........T................ | A [191631] ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //