Array 1 46332-45504 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVSP01000003.1 Mannheimia granulomatis strain MH-PKL1 Contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 46331 32 100.0 34 ................................ TGTTTACCGTGAGTTACTATCAGACGGGCAAGTC 46265 32 100.0 37 ................................ AACTAAATCTGTGGATAATTTGTGTAAACTTGCATTT 46196 32 100.0 35 ................................ TTTTTCTCACATTCGGATCTTTTTTATAGTCCGAT 46129 32 100.0 34 ................................ TCTATCCCACCACATTCCCGTTGAGGGATAGAAA 46063 32 100.0 33 ................................ TCGGAGAGGTTAACGCTGGGGGATAAAAAAACA 45998 32 100.0 34 ................................ CAATCTATTCGGATATAGCTCAAATTTGCGTTAT 45932 32 100.0 35 ................................ AGTACGGATGTGAGCGAGTCTTACACTGTTGATGG 45865 32 100.0 34 ................................ AATTCCTTATCTCAATAAAGAATGGTTGCAAAAT 45799 32 100.0 34 ................................ ATTTCTTAATGCAACTGGCAACTTTTATTAAAAA 45733 32 100.0 34 ................................ CTTTAACTTTGCTTCTAATAACAAGCCTAATTGG 45667 32 100.0 34 ................................ CCAAGTTATCAATTTATCGCAGATAAATGGGAGA 45601 32 93.8 34 ....T.............T............. CCTTTTCAGAATGCTGAGAGACATTTTGGTAAAT 45535 32 93.8 0 ......A........T................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 99.0 34 GCAGCCGCCTTCGCGCGGCTGTGAGTTGAAAC # Left flank : TACCGTTATGATGATGCTGATTACTTACGATATTTCGTTTGACGACCCCGAGGGGCAAAAACGCTTGCGCCATATCGCCAAACACTGTCTTGATTATGGCGTGCGCGCGCAATATTCGGTGTTTGAATGCGAAGTAACGCCCGACCAATGGGTCAAACTTAAACAAAAACTGCTGGCAACTTATAACCCTGAATGTGACAGCCTACGGTTTTATCATTTGGGCAGTAAATGGCGTAATAAAGTTGAACACCACGGCGCGAAAAGGGCTGTGGATATTTTTAAAGATACCTTGATTTTATAGTATTTTTGCGATCGCTAACGGGTAGTTCTCATGGAAGTGCCGTGAGGTTAGCGATTTTTATTGTTCTTTAATAATCAAAGCGTTATAAATTTTTCGTAGCGCGAAAGATATTATGCTACACTTAAATCACTCCTTAGCGTTCAGGTTAGCGAATACCAGGCTGCAAAGCCTTGTAGAATAATGCTTTGAACTATAGGGA # Right flank : TGTTCCTTTCTTTTTTATTTATAAAAAAATGACGAAACTATTTTGCATTATTTTTTGTAGCAGCTTTTAGTATGGATTTCAAGATTCGGCAAGCGGTTAAATTTTTGCAAAAGTTTGCAAATCTGTTATACTTCCCCTGAGTTGGTTAGGCAATCGCTGGTTTATTGAAGCCCTTAGTGCAGTAAAGTAAAGCCCGAAACGGGTGATAAGTGGGACAAATAAACGAGAGGAAAGTCCGAGCTACATAGGGCAGAGTGCCAGATAACGTCTGGGAGGCGTGAGCCTACGACTAGTGCAACAGAGAGTAAACCGCCGATGTACTAAGTGCAGGTAAGGGTGAAAGGGTGCGGTAAGAGCGCACCGCGTGGGTGGCAACATTCCACGGCACGGTAAACTCCACTCGTAGCAAGACCAAATAGGAACTCAATCGGTGGCCCGCCGAGAGTTCGGGTAGGTTGCTTGAGCGTATGTGTGAATATACGCCTAGAGGAATGATTGTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGCGCGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 66172-67263 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVSP01000010.1 Mannheimia granulomatis strain MH-PKL1 Contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 66172 36 100.0 30 .................................... CTCCACCACGCACGATTGAACCCTTAGAGG 66238 36 100.0 30 .................................... CTCCACCACGCACGATTGAACCCTTAGAGG 66304 36 100.0 30 .................................... TGATTTAGCTTGTTCTACTTGTGTTTCTGC 66370 36 100.0 30 .................................... TGTGCCATTGAACCAATCAAATAATTTATT 66436 36 100.0 30 .................................... CAATTATTCGAGCAGTAGCAGAAGAACTTA 66502 36 100.0 30 .................................... ATGTAACTTTTACTGCCAAAACTATTGAGC 66568 36 100.0 30 .................................... TGTATCACCGATTTTAACAACCAAAATTAA 66634 36 100.0 30 .................................... GCACCATGTTTTTAAATCATCAATCAATAA 66700 36 100.0 30 .................................... GAAAAAGAAGCGTCTCATTGAGGTTGAGAA 66766 36 100.0 30 .................................... AAAGAATATGAATTTATTGCAATTACATCT 66832 36 100.0 30 .................................... ATATTTCATTTTGGATATACCTTTTTATTT 66898 36 100.0 30 .................................... GGAATATTTCTTTTCCATCTAAACGACTTA 66964 36 100.0 30 .................................... AAACATAAAGCAAATAAGTTGGATATATGA 67030 36 100.0 30 .................................... ATTTTAGTATAAATACTTTATAATTTGTTT 67096 36 100.0 30 .................................... CTTTATAATCATCAACAGGAAAGTCTTTTA 67162 36 100.0 30 .................................... TCAAAATGGTTTTAAAGTTGAGCATTTTCA 67228 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATCCCTTTAGAAGAGGCTCCCCAGTTTTTCTTTTCACAGATTTTACGAGCATTTGGACGACGAATAGAACAATCGTTATAAGCAGCAAAATGGGTAGGATGTAAGCCTACAACCTTATTAGCTTGGTATTTGATATCACAAATTAAGGCGATTTCCGGCTCAATTTGCAGATTATCTGCATCTTGTGGAAAATTAATTGCATCGCTTGAAAGTGGGTAAGTTGCTAAGAACTGATAATCTCCTAGATTATCAGACGGTACATAAAACGGAAAAATTGCTTTTGGCTGGACAGCTTCCACTGTTTTCACTTTCATGAAATCAGCCGCCTCGCCTGCTTGCTCCAAATGCCCGGCAAAATTGCCAGCAACGCCTAAGCCGATAAAGTGTTGAGTAGTCATAGATTCTCCTTGCAGTAAAAGATTAATGAAATTCTACCGCTTGTTGAAAAGAATAACGAGTTTTTTGTGGTATAGAATTTGATTAGTGAGATAGGAAATTAG # Right flank : TCGAGCGGTCTCAAAGCCTGATAGGATAAGGTTTTAGCGAGTTTTCTCTTTGAGAAAAAACGCAAAAAAATTCTGAGTAAACGGTCTATTTTGGGAAAATTTTTGCAAGATTTTGCAGATTTTTTCTTGAAATAGACCGCTTGTTTTTGGTGGTTTTTAGCCAAAAAGTGTGAAATTAGCTCGCTGTGCTGAATAAAATTTCGGCAATCGAACAATTTATTTTATGTAGCATAGCCACTGTTTTCTTTCCTCAATTTGTTAGAAAAGTAGCAGTTGATTTGCATTCACTTTTTTCTCTTGCGGTTTTAATTCGCCGACTAAGAGCAGCATTGAAGCGAACTGTTTTTCAGTCACTTCCAAGCAGCGTATCGACCCTTCTTCGGGCAGATGTTCTGTCAGCCGTTTATTGTGTTTTTCCAGTGAATCCCGTCCTCGCACAATGCGGGTGTAAACCGAAAGTTGTAACATTTGATAGCCGTCTTTGAGTAGAAATTGCCGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //