Array 1 79947-80395 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHW010000002.1 Shewanella algae strain 5043 5043_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 79947 29 100.0 31 ............................. GAGATTCGGCGATATGCTGCGATGGACGCCA 80007 29 100.0 31 ............................. AGTAGTTCCAATTAACTTGAACTATTGGAGT 80067 29 100.0 31 ............................. AGATGCGGCCCACGTGGTTGGACTGGAGCAT 80127 29 100.0 31 ............................. CTGGCGTGTCAGAGTACGCCACCAGGATGTT 80187 29 100.0 31 ............................. ATTTACAACAACACAGTTAAGGGGCTCAATA 80247 29 100.0 31 ............................. ACAAACTCAATGCAGAATTGCACCGCCGTGA 80307 29 100.0 31 ............................. GTATGACGAAAGTACGCCTTCTACTATGCCT 80367 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= =============================== ================== 8 29 99.6 31 ATCTTCAGCTGCCTATTCGGCAGTTCACA # Left flank : GGGCAGTTTTCTGTGAGTGACAAGTCTTTTGCGAACTTGGTGTTGTGATAAAGGTGGGCTGCCCGGCGTTGGGCGTTGTTGCCGGAGCGATAAAATAGCCCGCAGCCACATTGAGAGCATGTGATGTAGGTTTCGTTACCGTGGGTGTGTTCGGCTATGGTGCGTTTGAGTAGTGCTTCATCGTGTAGTTGCACCCCATCGCTGCTGGGTTGTGTAATTTTCGAGGCAATGATCGGGTGCCTTTTCTCTTTTACATAGACTTCCCAAACTTTGTGCCGCAGTACCGTATCCATTCGCTTTGCTCTATACCTGCGTGTGTACTAGCTCAGTGTAACCATAATTCGTCTTAACGACGAACGATCTGGAGAATCTGTCCTAGCCTACCCCATAAAAAAAGATGCCCTCTTAAGGGGGCATCTTTCACTTGTCATGTAAGTAGAACAAGCCCTGCCTATTCGGCAGTTGTTTGCATTAACTTAAACATCGAAACGATTGTTTTT # Right flank : TATGAACACTATCTAAAATTTCACTAGTGTTCAATAGGTTGATGAATTTATTCTATTTTTACCATCTAAAAAAGATGCGGAAGAAAATGGCATAAATTCAGATGGTTAAGCGTTGATCACAAAAAAGGGTTAACGGGTATCGTTCGGCTTGAATGGGCTCAGATCTGGCACTGTTCCGGTGAACTTTTGGTTAGTCGAGAGTCCGTATTGATTGAATTCAATCGATGTTGCCTGATTCACCGTCTCTTTTTGTATGTGAAGTAAAAAATCTTGGCCTGTGCTTGCACTGCTGACTGCTATGCAGTGAAACGGGTTTAGTTCTTTAGGTGGGTTTCGGGGGGCAGGCGTAAAGGCCTTACCTCTAGCCTCGGCTCTTTTTTTCAAACGTGCTAATCGCCTTCTACGATTCCCTGCAAATATCTTGGCTATGGTTTGATTTCGTTTGAACCGCACTTCTTTGCAGTTATCCGGGACTTTTGAAACCTCACTGAGTTTGAAAA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTTCAGCTGCCTATTCGGCAGTTCACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 35605-31917 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADZHW010000034.1 Shewanella algae strain 5043 5043_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35604 28 100.0 32 ............................ ATTCTGGCCGGGCTGGTCATAGTCGCCGCCGC 35544 28 100.0 32 ............................ TTTCAGGCACACTCCAATTGCCACTGACAGAT 35484 28 100.0 32 ............................ CGACAGTCCGATTGTCTCGCTTGATGATATCG 35424 28 100.0 32 ............................ ATTCATCATCAGAAACACGATATCGGCTGCGC 35364 28 100.0 32 ............................ GGATCCCTGGTCAACAAGCACAGAAATTTCAC 35304 28 100.0 32 ............................ TGTCGCCTCAACCATCGCCTCAATCGCCTTGT 35244 28 100.0 32 ............................ AAAAAGCTTACAGGAACAAACACAGCTTTTGA 35184 28 100.0 32 ............................ ATAGTAAACTGCATCACCTATCTCGATAGGCG 35124 28 100.0 32 ............................ TTGATGGACTCATCAATAGAGTTCTGAAGCTC 35064 28 100.0 32 ............................ TTAATGGACAAATGCTAAACCTAAGCATAGGT 35004 28 100.0 32 ............................ TGCTTGGAAATCCAGTTGAGACTAATCGCAAC 34944 28 100.0 32 ............................ TCCAGATATATTTATCTTTGATAAACACTATA 34884 28 100.0 32 ............................ GACTCAACTCCAGCCAGAGAGCGGCAGGACAT 34824 28 100.0 32 ............................ GTATCGAGGAACTGAGTCAATAAAAGGCCCAT 34764 28 100.0 32 ............................ ACCAAAACTCGGCGCAATCAGCACCATTGCGA 34704 28 100.0 32 ............................ TCGAATTCAACGAATCCATTGAGCGTGACGTT 34644 28 100.0 32 ............................ TGGCGCTGATGGTTGCTGTGGTGGTGTGGCTT 34584 28 100.0 32 ............................ ACCTGAGCCGAACCCGAAATTCACACTCCCGC 34524 28 100.0 32 ............................ GATTGTTGATGAATTAAAGTCGCTGAATAAGA 34464 28 100.0 32 ............................ TCGTTAATGTCGAGAAAGCGGGCTATAGCGTC 34404 28 100.0 32 ............................ ACCACCCTATGAGGAAGAAAGTAGGCAAAGTC 34344 28 100.0 32 ............................ TCGGGCTGCCGATATTCTCGACGGCTTCGATT 34284 28 100.0 32 ............................ TTCGTCGTAGGGGTCGTTAAGCTCATACGCTT 34224 28 100.0 32 ............................ GAACGCCGCGAGAAGGACGAAAAGTTCGTCTA 34164 28 100.0 32 ............................ ATCAACCATGCCAGCGCCCTGGCTGAACAGTT 34104 28 100.0 32 ............................ ATCAAAAACAAACCAGGGCAAACAATAGTTAC 34044 28 100.0 32 ............................ GCCTAAGTCCCCGATATTCGCGGTCAATGCTT 33984 28 100.0 32 ............................ AAAGCGCGTAGGTAGCCTGAAGGGCGCGAGGC 33924 28 100.0 32 ............................ AAGCGCGGCTACAATATCGAAGGCCTCCTCCC 33864 28 100.0 32 ............................ TTTGGCGGACGTATGCCTGCTTCTGCGGCCTC 33804 28 100.0 32 ............................ GGAACGTGCCCTGTAGGGGGCGACTTTTGCAT 33744 28 100.0 32 ............................ ATCCTGCCTGAGCTTTTCGCGACTGATGTAGC 33684 28 100.0 32 ............................ TACCTGCTCGATGGCGAAGTGTCGGCGCTCAC 33624 28 100.0 32 ............................ AAACCAAATCCACATAGGCCGCTTACGGCCAA 33564 28 100.0 32 ............................ TCCTGACCATTGGTGACAATAATCTCAGCCTT 33504 28 100.0 32 ............................ TGAGGCACCTGGAACTGATTAGGGAGATTAAA 33444 28 100.0 32 ............................ TGATAACCTCTTGCGGGGTCAACGGGGCTGGC 33384 28 100.0 32 ............................ AACTGCAGGAGTTTATGGGGTATTCAATGGTG 33324 28 100.0 32 ............................ GCCGCTAAGGTGATGGGCTACTCGGTAAAAGA 33264 28 100.0 32 ............................ GTTGAACTCATAAAATATCTTCTCGCAGCACA 33204 28 100.0 32 ............................ AGCAGATGACATACCTATGCCAGCAGATAGCA 33144 28 100.0 32 ............................ GCTGGGGAAGAATGCGAATACAAATTGTGGAG 33084 28 100.0 32 ............................ TTATTACCCTCGCCTGGATGGCTTTTGCCATT 33024 28 100.0 32 ............................ AGTCAGGCGTTGTCACATCAGCTCAGCTTGAC 32964 28 100.0 32 ............................ GCCGCTAAGGTGATGGGCTACTCGGTAAAAGA 32904 28 100.0 32 ............................ ATACCCAGCTGGATAGATTTAACTGACATGCC 32844 28 100.0 32 ............................ AGAGAGCTTGCTCATGAACGTAGAACAAAGGG 32784 28 100.0 32 ............................ TTGTTGCTCACTATGTTTTTCAGCGCCCGAGT 32724 28 100.0 32 ............................ GAAACCGCTCTTCTACTTCATGGACAAACAGC 32664 28 100.0 32 ............................ TACGAACCCGGAAATCCTGCACGCCTTGCATA 32604 28 100.0 32 ............................ AACCACAGGCAAAGCAGTAGATAGTGCCAAAC 32544 28 100.0 32 ............................ AGATATTACCGATTGGCTCAGTAATGGCTGCT 32484 28 100.0 32 ............................ ATCCATTATGCCAGCACCAGAGAAAAGCGACC 32424 28 96.4 32 ..................G......... GTTTAGCCCGGCGGCTATGTCTGACCAGATAT 32364 28 100.0 32 ............................ GACATAACGATGCAGCACGCCTTGCGCCGTCC 32304 28 100.0 32 ............................ TGAGATGTTTGATGTTGCTTCGTTTGATGACA 32244 28 100.0 32 ............................ TTCCATACCCGTAAATTGTGACACGACATGAA 32184 28 100.0 32 ............................ TATGGATGCTGTAGCGCATATAGCAGCAGATA 32124 28 100.0 32 ............................ GATTACGACAGCCTGTTGTTTGATGATAACAA 32064 28 100.0 32 ............................ GACAATGACGAACTCGAACCACCAAGGCGCGC 32004 28 92.9 32 .............T..A........... AGCGAGGGATTTTAAATCCCTTTTTCAATACA 31944 28 92.9 0 ............T........G...... | ========== ====== ====== ====== ============================ ================================ ================== 62 28 99.7 32 GTTCACTGCCGCCCAGGCAGCTTAGAAA # Left flank : CGAGTGATGTTTCCTACGTCAGCTTTGTACGCAAACAGGTGAAATCGCCTGAGCGGATTGAGCGGGCTATGCAGCAAAAGGCGGCATTATGGGCTGCAAAGTCGGGCAAGCCGCTGGCCGAGTGCTTAACCGATCTTGAAAAAAGCAAACCGACTGGGCAGTGTGATTTGCCATTTATCTTCTTGCACAGCCAGCAAACGAAACAACGTTCGCCGGACAAAAACAGCAAGTTCCCGCTGTTTATTGAAAGATATCCGCAAAGCACACCTGTGGATGGGCAGTTCGATTGCTACGGGCTAAGTCGTAAAGTTAATGGTATTGCATCGCTTGGAACAGTACCGCACTTTTAAGCATCAAAGGGTGAGTTTTACCCTTTATTTTTGCTCTTTAAAAATAAGCTTTATATACAATCAGTTACAACAGGTGGTATTCAACAGGGTAAAAATAGCTTTTTTATCCTAACCACCTGTTGTGACTTTCTTTTATTGATTTATTCTATT # Right flank : GGTTTTCTGGTGAATTACCCTTGAGCCTTGCCGTGCTCCCTCCACAACGGGGATTTATCACTCGGCCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCTGCTCTGGGCGGGCGCCATTCCAGGGTTTGGCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCATCGGCCTTGAGGGCTATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCCTTCAAGGGGGAGCGGATAAGCGGGGCCGAGTAGCTAACCGCGACTCTTTGGCTGCAGGCGACCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCCCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCCCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //