Array 1 212643-210537 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIR010000001.1 Listeria welshimeri strain FSL W9-0988 NODE_1_length_343502_cov_84.772908, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 212642 29 100.0 37 ............................. GCATTTGTTTTTTACAGGTGATCTAAATAAAGCGGAA 212576 29 100.0 36 ............................. ACGCTTATTTGCCTTGTCTACAAGCGCAGGAACACC 212511 29 100.0 36 ............................. TTTGTTTTACTTGTCACTCCACATTTCTTTATTTTT 212446 29 100.0 35 ............................. ATGGATATTACACGTCATCCAGAAGAATATTCTTT 212382 29 100.0 37 ............................. CAGAACACCGTTTTAGCAGCTTTACCTCAGGGGGATA 212316 29 100.0 38 ............................. CAGTTTTTGCAAATGACAACATCTTGACCTGTTGTTTT 212249 29 100.0 36 ............................. TCAACTTGTTTGTGTAAGCTTTCATTGCTTCTTTAA 212184 29 100.0 35 ............................. TTAGGTTAACAAAATCCTCTTGTGAACGAACTCTA 212120 29 100.0 37 ............................. AAACAAAACATAAATGGGTGGGATGTTCATACATGGC 212054 29 100.0 36 ............................. TTCGTTAAAAAGAACGTCGATGACGATTGGCTGAGT 211989 29 100.0 37 ............................. ATTACAGCGCTTTGACGAACGAATAATTGACATTAAT 211923 29 100.0 38 ............................. TAGATACAAGAACTTAGCGTCTTCAAATTTAACAACGC 211856 29 100.0 35 ............................. AGCGTTTCCATCAAAAACAATAATTTCGTCATATT 211792 29 100.0 35 ............................. TATTTTTCAAAAATAGCTTTTAAATTCCGCATTTT 211728 29 100.0 34 ............................. ATTAGAACAGTAACATAGGCTTTGCTTTTACCTG 211665 29 100.0 37 ............................. AACATTCGCATCATTTGTATAACGTATTTTTACGTAC 211599 29 100.0 38 ............................. GAATATTATGAGTTACATTTAGATGAAATGCGACAACA 211532 29 100.0 38 ............................. GAAGAAAAAACTGCATTTTTTCAGCAATGTGCAGATAT 211465 29 100.0 36 ............................. AATTTTCGTTATGAAGTACTTGAACATGTCTCTGAT 211400 29 100.0 35 ............................. CGGTCCATATCAATAAATTGTAAAGTCGCTTTGCC 211336 29 100.0 34 ............................. TTTACCGTTAATGCAGATAATGACGGAAAAATGA 211273 29 100.0 34 ............................. TTGTTTAACTTTAGCTGTTGATAAAATTAGCAGC 211210 29 100.0 37 ............................. ATCAAATAAGATTCTTTTGAATTTAACATGTTAAATT 211144 29 100.0 37 ............................. ACATTACAAATAAGTATTTCCGCTCCCAAAAAGGGCG 211078 29 100.0 35 ............................. TATTCCAAGACTGTTTACTTGCGTTATGGTACATA 211014 29 100.0 36 ............................. GGTCATGTACTCATCGAAACAGAGGGCGCCCAGTTA 210949 29 100.0 36 ............................. AAACTTATTCACTTAAAAGAGCATATCAATCAACTT 210884 29 100.0 36 ............................. TTTCTCTTATTTCAGCTTCTGTGAATCTTGTTTTAA 210819 29 96.6 30 ............................A GTAAAAACCTGTGCTTGATCGCTCAGCTGC 210760 29 100.0 37 ............................. TGGGTAAGAAAGAAAAAGAAAAGTTCTGGGAAAAAGC 210694 29 100.0 35 ............................. TCTACAATTTCAGCAACAAAGTATTTCGTTTTCGC 210630 29 100.0 36 ............................. GAATTATTTGAAACTGATACCGCCGGAACAGTCCAT 210565 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ====================================== ================== 33 29 99.6 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAACATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAGATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGATTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAAGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCTCTCAACAATACACCCCAAAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTGGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCCGCGAAAAATAATCCCCACACAAGTCCTGCTGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCAAACGTCCTCGATGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATAACGATGAAAGTTAAAATAAATGCTAAAATGGTCATCTAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAAAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 93762-94589 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTIR010000011.1 Listeria welshimeri strain FSL W9-0988 NODE_11_length_95571_cov_95.829906, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 93762 36 100.0 30 .................................... CAATACCAGAAATTTCACAGGCTTCTATTC 93828 36 100.0 30 .................................... TTGCCGGACAGAGGCTTTGTATCTGATCGT 93894 36 100.0 30 .................................... TGAATTGTATCTGTTTTCAAGTTGCTGCAG 93960 36 100.0 30 .................................... ACTCACGAACTGACAGCAAAAGGTTTGAGA 94026 36 100.0 30 .................................... ATGAAGTAGTAGACGCACGTGTTTCTTCTC 94092 36 100.0 30 .................................... TTTCAATGTAGCTATTAAACAACTTGGTTC 94158 36 100.0 30 .................................... TTAATAAACGAAAATTTACCTTTTGCTGAC 94224 36 100.0 30 .................................... CAAGAATCCAATAATATTTCAAGTTCCTCA 94290 36 100.0 30 .................................... AAATAGCTTTAGTCGATTCCAGCGATCCTT 94356 36 100.0 30 .................................... TGATCTGTTTTATTAAAATATGTACCTGTA 94422 36 100.0 30 .................................... GTATAAAGAAAAGAAAAAAGCGGTTGAAGC 94488 36 100.0 27 .................................... GAATATTCTCCCCCATCGCTAACAGGG 94551 36 83.3 0 ............CA.....C.....T.A.......G | A,A,C [94576,94582,94585] ========== ====== ====== ====== ==================================== ============================== ================== 13 36 98.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //