Array 1 8147-6395 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVJG01000074.1 Bacillus pseudomycoides strain AFS064122 AFS064122_79_B10_Contig51_140604, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 8146 32 100.0 35 ................................ TCAAAGGGATTGATATTATCTCAATAACAATATAA 8079 32 100.0 33 ................................ GTCTTATCGAATGGAGCTATAACAAAGTCGGAA 8014 32 100.0 34 ................................ CACCATGCGTCGTAAACGGACATAGATAGCGTTT 7948 32 100.0 33 ................................ ATTTAACAAATTGTCTGACGGCATAGCATTAGG 7883 32 100.0 33 ................................ TTGTACAAAATGGAGCAGTTGTTTTTAGTCAAA 7818 32 100.0 34 ................................ AGTCCAGCGCAGTAAGGAATTAGAGGCGGAAAAA 7752 32 100.0 35 ................................ AATAAGAGCCACGCAGTAGGATACTCAATGATAAC 7685 32 100.0 35 ................................ AAGACTCTCCGTACAATGTTCCCAATGGTTCGCTA 7618 32 100.0 34 ................................ AGTCTGGAAGATGAGATAAATGCACGCCATATTA 7552 32 100.0 34 ................................ GTAAAAAAGCAGTCAATTTGCCTGCTAGTTTGAA 7486 32 100.0 34 ................................ TGAAAACTAAACAAAATCCTTACTTAGGAGGGAA 7420 32 100.0 34 ................................ AAATCTGGAATTCAAAGCATGGTACGAGATTTAA 7354 32 100.0 35 ................................ AACAAGGTAAATAAGGAACTTTTAGCGCTCACTAG 7287 32 100.0 33 ................................ AAACCAATAAGAGACTATATCAAAAACTATCAT 7222 32 100.0 35 ................................ AATGGCTTCCCTCTCAATACAAAACTAAAGAGTTG 7155 32 100.0 34 ................................ AGAAACGGAAACACTATCGAGGGTACAGTGGTAG 7089 32 100.0 35 ................................ ATTGGAAATGCCGGTACAGTACTGAAAACAGCGAA 7022 32 100.0 35 ................................ ATAGTGAAGTACCGGGTCAAGAGGTAGCCGCTGGG 6955 32 100.0 34 ................................ CTGACACCCACGCCAGTATAAAACCGAAAACCCA 6889 32 100.0 34 ................................ AAGTCCTTGCATCCCTAGCACAACAGGAACATTA 6823 32 100.0 35 ................................ TGTAAAGCTTCAGTTTCAGATAGAGATATAACAGA 6756 32 100.0 33 ................................ TTTAGAAAAGCTTTCCCAAAAGATACACATTAA 6691 32 100.0 33 ................................ CTATCTTGTCCAGGAGGGATATTCCCAAATGAG 6626 32 100.0 35 ................................ ATTTCTTTATTATTGATTTAAAATCGGGGTTAGAA 6559 32 100.0 36 ................................ ACTCATATTATCTGTTCGAAGGCCAAACACTTTTTG 6491 32 100.0 33 ................................ AATAACCACCACTGCAAGTTGAAAGTTATCTAT 6426 32 93.8 0 .......................A....C... | ========== ====== ====== ====== ================================ ==================================== ================== 27 32 99.8 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATCACATATGATGTAAGCACTGTTAGCAGTGTAGGACAAAAAAGGCTGCGGAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTAGATGCAACTCAATTTGCTACTTTAAAGATGGAACTAGTTAAAATTATTGATGAAAGTGAGGATAGTCTCAGATTGTATCAGTTAGGTAATAACTATAAAAGTAAGGTCGAACATATTGGTGTAAAAGAATCAATTGATTTAGAAGGTCCTTTAATTTTTTAGGTGCGAACGTATAGCATACATAAAATCCCTAGTACATTCGCACCTAAATTTTCATAATTTATGATTAAAATTTATGATTTTCTATACAAATTTCTTTATCAAATAAAAAACTTGCATATTTTTGAACAGAATTAATGTATTTGTGTATTATTTTGAACACAAATCGCA # Right flank : AAGGTAAAATGAATCATATTTCGACTTTCACTTTCCTCTTTTTATCCTTTACTTTTATGCAAAAGAGATATAAAAAGAAGCTTAACCCCTTATGTATCAATGGATAGAAGCTTCTTTTTTTTGCAAGAATATCCTTTGCAACAAGATGCAATTATATTTCAGCGTATTCGCATCTTGTAGCTATTAGTATGTATGCTATATTCCACAAAATAATTACAAAAAATCTCTTATTCTCCTTATCTATTTCTATTCTATGCACCTTAAAGAAGACGTATGCACCATTCGAGGTGAACGTGTATAAATTAAATTGAAAGTGTCCAAAATAAAAGTTAAATAGGGTAGAAGAAAGGAAGACACTTTCATGAAGGGAAATAAAAGAAATCGTACAAAATTGGGGAAATGGTTAGACCATAACGGCATAGAACAACAAGAATTAGAACAAGAAACTGGTGTTAGTCGTAATACAATTTCAAGGTTATGTAACAATAAATCACACACAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 347759-347908 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVJG01000048.1 Bacillus pseudomycoides strain AFS064122 AFS064122_79_B10_Contig30_140604, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 347759 30 100.0 30 .............................. TAGCCAACCTGTTTGCATTGCTCCGTTGCT 347819 30 96.7 30 ......A....................... CAACCAGCCTGTTTGCATTGCTCCACTATT 347879 30 93.3 0 .........A.....G.............. | ========== ====== ====== ====== ============================== ============================== ================== 3 30 96.7 30 TTGCAGGTAGTACCAAGTTGTTCCTTCCTG # Left flank : TTTAACACACGAAGTTCTGGTCGATCTTTTACAAATCTATTTTTAGCACCTGTATTTTTAATTAAAGCATTCTGTACAGCATTTGCTAAAGTAAGTGCTTGTTTACTTTTTGGGTGTTCAGAATTATATAACGTTTCAATTCCTTCTGCTGCAGTCGCATCAGCTGAATTTACATGCACACTAACAAAAATATCTGCTTTGTTTTCATTTGAAATACGAACACGATCTCCTAATGGAATAAAGATATCTGTTGCTCGTGTCATCACAACATTTGAACCACTCTGAGCTAATAAACTCTTTAACTTCAAACCTACTTGCAGGGCAATCGTTTTTTCATATATATTTTCATATAATGTCCCCGAATCATATCCACCATGTCCTGGATCAACTATAATTGTTTTACCAAATATGATTGGATTGTCAATCCAAACACCATTTGTATCAAAATAGTATACTTTACCATTCTCATCTAACCAGCCTATTTTCATTGCCCCATTGCC # Right flank : CAACCAGCCCATTTGCATTGCTCCGCTTCCG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCAGGTAGTACCAAGTTGTTCCTTCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.00,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //