Array 1 61338-60391 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWU01000135.1 Escherichia albertii strain U-112-1 entry135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 61337 29 100.0 32 ............................. TCGTCCTCCCTCGCCTTGACGGTTTTGAACGT 61276 29 100.0 32 ............................. GTATTTGGCCTCATCGCCCGCGAAGTGGATGT 61215 29 100.0 32 ............................. AACCCAGCAGATAACTGGATGCCGCCTCGTGT 61154 29 100.0 32 ............................. GCGGTCGATCTGGTGATGAAGAATCATTCCAT 61093 29 100.0 32 ............................. GCCACCATCACACAGCTCAGGGGGAATACGCT 61032 29 100.0 32 ............................. CTTTTCTTCGGAGGCAGAATGGAATCGAGATC 60971 29 100.0 32 ............................. CGTATCCAGGATGTAATCACCACTGAATCCAA 60910 29 100.0 32 ............................. AACGGGATAAGGTTAACGTTGACCTGGCTGCC 60849 29 100.0 32 ............................. TCTGTTACATCCCCAACGGGGGCGCAGTGGCA 60788 29 100.0 32 ............................. CCGAGATATTCAATAACCCCGCAGGGTAAACC 60727 29 100.0 32 ............................. AAAAATCAGATGAAGAGCAAAAAATTTATAAT 60666 29 100.0 32 ............................. GGTGAGTCTGTCAGCGGCGCACCGCTGCAACA 60605 29 100.0 32 ............................. GAGTGACCACGGTGGCAAAAATATCAGGAACT 60544 29 100.0 33 ............................. TCGGCGGTGTTCCCCCCTCCCAAACCATTAAGC 60482 29 96.6 32 ............C................ GGAGAAAAATCACGGCACAGAAGAAGAGTTAC 60421 29 79.3 0 ............C..A........TCTG. | A,C [60393,60402] ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCCGCGCCGGATATGTTACCCCCTGCAATTCCTGAACCTGAAACATTAGGCGATAGCGGTCACCGGGGGCGCGGTGGATGAGTATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTTCGCGCAGGTGTATATGTCGGAGATACGTCAAAACGTATTCGGGAGATGATCTGGCAGCAAATCACTCAACTGGCTGGTTGTGGAAATGTGGTAATGGCCTGGGCGACCAATACCGAGTCGGGGTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTAGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATGAGTTACCCGTTATTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : CTTCTATTTTCAAACTCATCAAGACGCCTTCGCCAGTTCCTTCACCAGTGGCAGCATTATCCGCATAATGTCACGGCAGCGACGTTCTATTCTTCCTGGAAGCGCCTTATCAATATGTTGTTGATTATCCAGCCTTACATCATGCCAGCTATTTCCCTTCGGGAACGCTGCTGTTTTTGCGCGTTGTTGATAGCCGTCTTTATTTCCAAGACTCCAGTTTGTTGCTTCAACGGAAAGTACAGCAATATCCGCTTTGTCGAAAACTTCTGCATCATTACAACATCCCGTGCCTTTCGGATAATTTTTATTCAGACCTGGATTTGTGGCGGCGGCAATTCCATGGCTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCCGGGGTGTTTACGCCGCTATTGAAATACAGCTTATCGCCTACAATCAGGTTATCGAGATTAATAACCAGTAGAGTATTTTTCTTTTCGGCTTCACTCATTCGCTTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 145725-146538 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWU01000059.1 Escherichia albertii strain U-112-1 entry59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 145725 28 100.0 32 ............................ TCCGCATAGACAAAATCCCCCTGGAACGGGAC 145785 28 100.0 32 ............................ GGTATTATTTACACCATTGATCAGGGCGACGA 145845 28 100.0 33 ............................ ATGTTGTATGCCTATTTTTTCACGCAGTGAGAG 145906 28 100.0 32 ............................ TCCAGCAATTTGCGCTCCTCGCTGTTGAGCGC 145966 28 100.0 33 ............................ TCGAACAACTCGCAGATCTGGCGGTGTGTCCTG 146027 28 100.0 32 ............................ TCGACAGGTTCAATCACCAGGCGGGCTGCGAT 146087 28 100.0 33 ............................ TGTAGTGACGTTTGCAGAAAAACAGGCGTTAAT 146148 28 100.0 32 ............................ GGAGAATAATTGCTCCCTGCCGCAGTCGCAGC 146208 28 100.0 32 ............................ TGGATTATTGAGGCGCGTAAATATATTGGTGA 146268 28 100.0 32 ............................ TCTAGGGCGATTAACGTCTGATTCAGCAAATC 146328 28 100.0 32 ............................ GGTTAGATATGTTACGGGCGTTGGATGATCGC 146388 28 100.0 32 ............................ TCTCACCTCTGCAATAGCAGCAACAGCATCAC 146448 28 100.0 33 ............................ TGGCTGAAAAACTGTTACCACCCATGGATTCGA 146509 28 85.7 0 ....................A...C.CT | T,C [146529,146533] ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTACAGTTGGATCAAAAAGGCGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCCGAAAAAGGTTACGACCGGGCAATGGGTGCGCGTCCGATGGCGCGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCCAACGAGCTGCTGTTTGGCTCGCTGGTGGATGGCGGCCAGGTGACCGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGCTTCCAAAGTGCGCAAAAGCATAAACCGGAAGCCGCGCATTAATCTGATGGTTAGGTAAGTTGATGAAGTCCGTAATCTCGTCAGAGGTTACGGAGTTTTTGTTTGTAGGCTGGGGCGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGAATAAAAAAGGGGGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCCATGACACTCTCAACTCCGAACCATTAACTGTGGTGCACAATAACAATTGTGATAATTGCGATAAAAATCAATTTCTCACACAGAAATCAATGCTGTACTAACCCAACGCCTTCAAACAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGAGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTCACCAGCGAAGATAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACAGCATTGATGTTGGGGATGGGAACATCCGTGACTCAGGCGGCAATGCGTGAATTTGCTCATGCCGGGGTGATGGTGGGCTTTTGTGGTACTGATGGCACGCCGCTATATTCGGCAAATGAAGTGGATGTCGATGTCTCCTGGCTCAGTCCACAAAGCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 160792-161180 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJWU01000059.1 Escherichia albertii strain U-112-1 entry59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160792 28 100.0 32 ............................ ATTTCAAGACGGATAAAACTTCTCTGGAAGGC 160852 28 100.0 32 ............................ CCTACGACCACCACCGCGTATCACTCGACAGC 160912 28 100.0 32 ............................ TTACCCAGCGATACCGGGCTACCAACCACCAC 160972 28 100.0 32 ............................ GCCCATTTGCGGCTATCACGCACGTTTGTAGA 161032 28 100.0 32 ............................ AACCAGTGTGGAGCAGTTCTTCCGTCGAAACG 161092 28 100.0 33 ............................ ATGTTGCATGATAGGTCTTGCAAGGTCAGTGAA 161153 28 85.7 0 ...........C........T..TC... | ========== ====== ====== ====== ============================ ================================= ================== 7 28 98.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGTGTTTTTTATTTAAGACACTCAATGCGAAAAAAAAGCCCGTACTCTCGTACGAGCTCTTCTTAAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATCGATTGATTCGTTTGGTTACGCAATGAACACACTATTTGCGTGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAGAAGTACCAGATTGCCCCTTTTTTAAGTTGAAATGTAACTTATTGATTTTGTTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACGGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACACAACACTCCATACTCCAATATTTATTCCCCATAACTCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTATTCGTTCTTTCTCTTCGCCCGTCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTACGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCCAGTACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCATAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAAATCGCAACAAACAGGTTTTGCACATAACTCCGAAAACACACGGCTAAGCCGCACCATAAGCGCAACATATAAGGGAGCGGTGA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //