Array 1 218-8238 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARP01000044.1 Salmonella enterica subsp. enterica strain CFSAN058609 SRR6919331_NODE_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218 29 100.0 32 ............................. GCCTGAGACAGCCACTGCAGACTCGTTCCGGA 279 29 100.0 32 ............................. CCGCTATCAAAAAATAATTCAGCACCGCTGAG 340 29 100.0 32 ............................. ATTTCTCCTTTGTTGCTGGTTCTTCTTGTTGT 401 29 100.0 32 ............................. AATATAAATATCTGCAACAATTGCACGATTAT 462 29 100.0 32 ............................. GTCCGAAGTGGTTCACTATCTAATTGAAAACT 523 29 100.0 32 ............................. GGATTGATTATTTATATCCTTATCAGGTTATT 584 29 100.0 32 ............................. CCACACGCTCAATATTTATTAAAACGGCACCG 645 29 100.0 32 ............................. ATAATGGTGATGTTGTCGCCGCTATTAATGCA 706 29 100.0 32 ............................. GCTGCTGACCCTGCATTTACGCCGGGTTCGTC 767 29 100.0 32 ............................. CCAGGCAATCAATTACGAGTTGCTGACCAAAT 828 29 100.0 32 ............................. TTCACCGGCGCGTTTGAGGACGGCACAATTGA 889 29 100.0 32 ............................. TTAAAAATCAGTTTGTCAGTAAAAGACGGGCC 950 29 100.0 32 ............................. TCTATTATCGCCCGATTCAATATCTTATTGGT 1011 29 100.0 32 ............................. ATGATGAGGGCGGGCCTGATGATGAATACTGG 1072 29 100.0 32 ............................. ACGTGAGTTACCTTTCATCCGTATTAGCTTCC 1133 29 100.0 32 ............................. TTCCGGTAACAAATCCGGATCAAACCAGTCCA 1194 29 100.0 32 ............................. CCGGGTTTTCACTACCATTCAATCAACCGGAC 1255 29 100.0 32 ............................. ATCTCACCGAACTGGCGGAGCGTGACCAGAAA 1316 29 100.0 32 ............................. CGCTTACGTCATGGCTTGCGCTTCAGGGAAGA 1377 29 100.0 32 ............................. CTGACGCCGCAACCACCCAGCAGAACATAGTC 1438 29 100.0 32 ............................. ACTGCCTTTTAGCTACCGTTACGCTTATTTTA 1499 29 100.0 32 ............................. CGCATTTCGCTTGAAATATAGTGCAGACTGAT 1560 29 100.0 32 ............................. CGTTGAATTAACCCCCGTAGTACATAACGGGG 1621 29 100.0 32 ............................. TTGGTAAACAACTGGCAGCCGCGCGAGGTGAA 1682 29 100.0 32 ............................. GCGCAAATACGGCATGTTGCCTACTTACCGTA 1743 29 100.0 32 ............................. ATTACTATCGAACTTAATATTGAATTTAGCAG 1804 29 100.0 32 ............................. ACAATTTTAATCGTTCTTTCCCTGCCATTATT 1865 29 100.0 32 ............................. CACAGTGGATCGGACGTCTGATAATGCTGGCG 1926 29 100.0 32 ............................. TTTTTGAGGGTCGAGTCCCAGCGCTTCCGACC 1987 29 100.0 32 ............................. CAGATTAACCCTGTGGTCACAACACCCCTGAT 2048 29 100.0 32 ............................. GTGACTTTCTCCACGTCCCCCAGGTCGATGCT 2109 29 100.0 32 ............................. GCAAGCAAATCATTAAGATATTTCGCGAGGAA 2170 29 100.0 32 ............................. TGTACACCATGAATAACGGTTCTGTGTTTGAA 2231 29 96.6 32 ............................T GTCCCAGATTGTTGACCAGTACGGCAACCCGA 2292 29 100.0 32 ............................. CCTACAAGCGCAACCGCCAGGCGTTTAACACG 2353 29 100.0 32 ............................. CGTTTTTATCGGTTCCACCGTTCGCCGTCAGT 2414 29 100.0 32 ............................. CGTCTGGTCTCGCTCTTTGGTGGCGTGTCCCT 2475 29 100.0 32 ............................. GAGGCAATCTATGCCAGCAACAGCACGATCAC 2536 29 100.0 32 ............................. TCTGCATATAGCACACGCGCTGACATTGGTGT 2597 29 100.0 32 ............................. GACTGCGACAGGCACTGAGCAACGCTGGCATA 2658 29 100.0 32 ............................. AGATAACCCAGCGTTTTAAGCTGGCGAAATTT 2719 29 100.0 32 ............................. AACCCTTTGAGTTTTACCTCAGCGACGACAAC 2780 29 100.0 32 ............................. GCTCGCCGGGATCTTGTGTAGCCGGTATTGCA 2841 29 96.6 32 ............................C AGATAGAAGAGTTAATGAAGCGCTACCGGTTC 2902 29 100.0 32 ............................. AAACCTACTATTACGGTCAGGGCAAGCTGTAT 2963 29 100.0 32 ............................. CCTAATTTCAACCGAAAAAAATTCATCGAAAC 3024 29 96.6 32 A............................ TTCTTGCTGAGTTTCTGTGCGGCGACGTTTTC 3085 29 100.0 32 ............................. CTCGCGGGCGTTGCTACTAACGGTAACGTTGT 3146 29 100.0 32 ............................. TATTACGAAGGCTGAATGTTGAGTTTTATTGC 3207 29 100.0 32 ............................. AGACAGTCAGCGCCAAGTTCTTCCATCTCGTC 3268 29 100.0 32 ............................. CTCAGCCCCGCATTACCGGATTTGTCCGGAGC 3329 29 100.0 32 ............................. CTCACTTTCATCATTACTTAGCGTCGACATAG 3390 29 100.0 32 ............................. ATTTAATTCTACGGGGGCTTGTTACTGGCCAT 3451 29 100.0 32 ............................. GTGGCCGGGGTCAACCGCGACGATCTGCTGGC 3512 29 100.0 32 ............................. TATCCAGACTGTCCTGGCGGTTATAACGAAAA 3573 29 100.0 32 ............................. ACGTTATCCAGTTGTTCTTCAGGGATACCATC 3634 29 100.0 32 ............................. TGTCCAAACTGGAGCTGGCGCTCAGCGTGGAG 3695 29 100.0 32 ............................. CAGTCATCTGGAATCCTGATCCCCGCGACGCA 3756 29 100.0 32 ............................. GTCATTATCAATTTCATTTGTTTCGAACATCC 3817 29 100.0 32 ............................. TCGTTTTCCTCAATCAGTGGATTAGTAAAAGG 3878 29 100.0 32 ............................. CCGCCGGAGCTGCTGGCCCCGACGCTGCCGTC 3939 29 100.0 32 ............................. GATGCCGTGGGTCATGGCTTCAGTGCTCAGGA 4000 29 100.0 32 ............................. ATTTTTCATTGTCGCGGGTTCCGCTTCGCAGC 4061 29 100.0 32 ............................. GTTCATGGCTTTTTCGTGGGGATTATAGCGAA 4122 29 100.0 32 ............................. GCTGATGGTTCTGGTCGTTACGTGAAAATTTT 4183 29 100.0 32 ............................. CGAATTGCAGGACGAAATTACAGAACGGGTTA 4244 29 100.0 32 ............................. CCAAAAAGCCGGAAGCAACTGTATCGTACATA 4305 29 100.0 32 ............................. GACGGCTATTTACGCCAGAAGTTGGCATACAT 4366 29 100.0 32 ............................. GGTATAAATATAATTGAGATTCTTTCTGTATC 4427 29 100.0 32 ............................. CAATCTCCGCTGGTAACATGCGGTAAGACTGC 4488 29 100.0 32 ............................. CGAGCAGAAGACGTTGAGCCTGGTGATGTTGT 4549 29 100.0 32 ............................. GCGTACGGTGGTCAGCGCATGGCGATTCTGAT 4610 29 100.0 32 ............................. GCAGGGAAAAGATGAGGCAGCCACAATCACAA 4671 29 100.0 32 ............................. CGAGGGCGACGGATATCAAGCTGCTGAACACA 4732 29 100.0 32 ............................. AGATGATGGAACGTTGGCAACGTTATTATAAT 4793 29 100.0 32 ............................. CATGCATAAACTTTTAAATTCAGGGGAGAATT 4854 29 100.0 32 ............................. ACACAAGCGATGGTTGTTCAGGGGTTTAAAAT 4915 29 100.0 32 ............................. TTTCTTGATGCGGTGAACTTTGTTGAGGGTAA 4976 29 100.0 32 ............................. TTGAATCGGCGGCGGCGATAATGGCATCGCGC 5037 29 100.0 32 ............................. TTATTCCAGGCGGTATTCCGGGTGTTTGTCGT 5098 29 100.0 32 ............................. GTGCGCGGGTTTTTTTTGGTCTGGCAGTGGAG 5159 29 100.0 32 ............................. CGCTGATTGCCCGCGCCGACCCGCAGGCATTC 5220 29 100.0 32 ............................. GTGTTTTTGATGTGTCTGCATTCTTTGCGACA 5281 29 100.0 32 ............................. TACCACTCTCGAATATGAGATTGCAAGGGTAC 5342 29 96.6 32 ............................T AGATCACTGTATAGGGCGTGATGGTTTCTTGG 5403 29 100.0 32 ............................. TTCAGGCTCAGTGTATCTGTGGGATGAGTCAC 5464 29 100.0 32 ............................. TGGGTCGGCTTGAACCATCCGGCGCACCTGCA 5525 29 100.0 32 ............................. GTGACGGGACAGCCTCACCGGAACTGCTTAAC 5586 29 100.0 32 ............................. CGATGCATATAAGAACCGCCGGGTTGATTTCA 5647 29 100.0 32 ............................. TATTCCAGTTCGTTCGCGCTCTTTAATTGAGG 5708 29 100.0 32 ............................. GTTACACACTTGTCCCCGTCGAACCAACGGAT 5769 29 100.0 32 ............................. TTTTGAGAGTGCCTAAAACCCGTCTCAAAGGG 5830 29 93.1 32 ............T...............T GGAGCGACGAGGCGCGGGCCGAGGAAACCCTG 5891 29 100.0 32 ............................. ACAGCGATATTTATCTGAATCTGGCGGGTTCG 5952 29 100.0 32 ............................. AATCTTTCCTTCTCACTGTGTCCCAGCGCAGT 6013 29 100.0 32 ............................. TATCACTACAGCCCCACACAAAACACGTTTTA 6074 29 100.0 32 ............................. AGTATCAGTTGAGGATTGCTGCCTGTGAACTT 6135 29 100.0 32 ............................. ACAAGGACACCGGCGAGCGCTCGCCGCTGATC 6196 29 100.0 32 ............................. CACCATATTAGACGCCCAATACCTCCACTAAG 6257 29 100.0 33 ............................. CCAGATTCAAGAGACGCATTAACGCCGGATTGC 6319 29 100.0 32 ............................. CGGTCTGCATGATTACTATGGCATTGTCGGTA 6380 29 100.0 32 ............................. ACCGTAGATATTAGTAACAATACGGCGTCCGG 6441 29 100.0 32 ............................. GCTGTGGCTTCCCAGTGCTGGCCCATCACTGT 6502 29 100.0 32 ............................. GCTGGTTGTTACTCCACTCCTTTGTTAACCAT 6563 29 100.0 32 ............................. TCCACAACCGGGGATACATTTGTTTATCGTGG 6624 29 100.0 32 ............................. TTGACGTCTTCGCCGTTCTGGTAAGTGTCCGG 6685 29 100.0 32 ............................. GAACCCCGTCACTACCTGTCCGCCGCCGAGCT 6746 29 100.0 32 ............................. ACCGCCCGCTTTACCGGCGAGTGCTCCGCTCA 6807 29 100.0 32 ............................. TTATTGCCTCTGGCGTAATTACCCGCAACTAC 6868 29 100.0 32 ............................. CGGAAATCAACCTGGGTACTGCCATCATGAAC 6929 29 100.0 32 ............................. GATAACGAGGAGAAAAAGAAGACCAGGAATAA 6990 29 100.0 32 ............................. ATTCATCAGACACCTCGACGCAATAAACGTGA 7051 29 100.0 32 ............................. GCGCTTATTCTGGCAATGGTTGGTCTGCGTAA 7112 29 100.0 32 ............................. GGCAACGACATAGAAGCCTTTATAAAGTCCGT 7173 29 100.0 32 ............................. CAGAACAAACGCCAGCCAGTCGATATTAACCG 7234 29 100.0 32 ............................. TTATCGCTCATTTCGCTTGCTGCCGTTCTCGG 7295 29 100.0 32 ............................. ACGAACGGGAACGGGATGGCTATCGCTAAGAT 7356 29 100.0 33 ............................. ACATTGCTCACTGATTTTAGCCCCGCGGCTTGC 7418 29 96.6 32 ............................C AGTAACGTTTAATATTTAAATACATGGCTAGC 7479 29 100.0 31 ............................. CGTTTTTTTGACTAGTTGGTGTCTAGGTACT 7539 29 100.0 32 ............................. ATTGAAATAAAGCCCTCACAAGTAACGTTTGA 7600 29 100.0 32 ............................. GTTTTCATCCCGGCACCACGTTTTCAGGTGTA 7661 29 100.0 32 ............................. CCACGCAAATCAAAACTGGAACAGGCTAAAAA 7722 29 100.0 32 ............................. ATATCGTCCAGACCGTACCCCACGGCCATTTC 7783 29 100.0 32 ............................. GAGTTCGGCGAGCGGATAACGGTCAGGGTTGA 7844 29 100.0 32 ............................. CATGAAAAATCAAATTTCAGGTCATCCAGTTC 7905 29 100.0 32 ............................. CATGACAATCGAAGGCGGTAGAACGAAGAAGG 7966 29 100.0 32 ............................. GGTGTTTCGCTGAACGTTTCCAGATCAGCATA 8027 29 100.0 32 ............................. AGGCATTAACTATGTCAGTAGCAGAGTCTAAA 8088 29 100.0 32 ............................. GGCCGTTCATCCACGAGGTGTCAGGGGCGTTT 8149 29 96.6 32 ............T................ ATGTAAATATGCGTACGTGCATATAGCACCGG 8210 29 93.1 0 ........T...T................ | ========== ====== ====== ====== ============================= ================================= ================== 132 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAACGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGACTTTCTGGAACAAATATATAGATTTAGTG # Right flank : GCTTTGTAAAAATCTTATGACGGTTTCAAATGGCATCCCTGTGCAAATGAGTCCCGTAAAAGTTACCGTGGAGCTGCTTGCTGATAACCTGCGACACAGCCTTCTGGGCCCGGCTTTTTTTACTGTTCCTCAGTTGCTGACGGAATATACCGGAAGCACGGTTTTTGCCGGGAAGTCACTGACGGTTGATGGTTGTCTCACAGCAGTCCGTCCGGGAAGTTCGCTGCAGTGTCTGGATAAATCAGCCTGAAGGGCCGGAGACAGAGTTATACAGCCTACATCCCAATAGTGTGACGACAGGACGTTTCCCCGGCAGTCATGCAGTCCCCTGCGGATTGTCCGTAGGGGGGAGTGATTATCGTTACCTGGAGAACATGGACGAATCTGACCTTTATATACTGTCGGAGGATGAACTGGATTATTTTAACTCATCGGCAGACCACCGTCTGGCTGAGCTGACGATGAACCGTCTGTATGACAAAGTGCCGGCCAGCGTGTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 254484-248721 **** Predicted by CRISPRDetect 2.4 *** >NZ_QARP01000005.1 Salmonella enterica subsp. enterica strain CFSAN058609 SRR6919331_NODE_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 254483 29 100.0 32 ............................. AGGGTCTGTTCGTTGATGAAGAGACCGGGGCC 254422 29 100.0 32 ............................. CTCGATGAGTACCTTCAGGGTGCGGACTGGTT 254361 29 100.0 32 ............................. TCACCCGCCAGTGGGTGGATGAAAAAGGTAAA 254300 29 100.0 32 ............................. GTTTATTTGGTAACAATGCATCTGGCAATAAA 254239 29 100.0 32 ............................. CCGCACAATCAGCTTGGCGACTGGCAGCATCA 254178 29 100.0 32 ............................. CAAAGGCTCACGCTAATCCGACATATAAAAAT 254117 29 100.0 32 ............................. CCGGTGCCGCTGGCCTGGATTCGTGACCAGAC 254056 29 100.0 32 ............................. GCTCCACCACGCTTGAGCAGGTGCTGGACAAG 253995 29 100.0 32 ............................. CTTTTGAAAAAAGAACGGCACGGTACTAATAA 253934 29 100.0 32 ............................. AGCAAAAACGCGATTTGCTGGCGCTGACCCGC 253873 29 100.0 32 ............................. TGACCAGTTGAATGTGATCCGCCCGGTACCCG 253812 29 100.0 32 ............................. CGAACGTCTGTCATGGGGAGATGCCTGGATTG 253751 29 96.6 32 ............................T CTTAAATTATCATCAGGAGTAGCAGAATAACT 253690 29 100.0 32 ............................. GCGATATTATTGTTCTGAGTGGTCTGACTCAG 253629 29 100.0 32 ............................. CGTTTATTTATGTGTTTTCTGGCCCCGGCTTT 253568 29 100.0 32 ............................. TAACCTGGTATGAGGTGCCTTATACGGCTCTC 253507 29 100.0 32 ............................. TGGACGAGGCTCAAAGAGCCGTCCTGGTCAGG 253446 29 100.0 32 ............................. GAAACGGGGCTATTGTTTGATGTGAAATACCA 253385 29 100.0 32 ............................. AGAAACCGGCAGTTGCCCCCCCGTCTTCCGGA 253324 29 100.0 32 ............................. CCCAGTTAATTTCTGCTGCTCAAATGGATATT 253263 29 100.0 32 ............................. GTTGTGAATATATCGCTCATGGTCTTTGTTTC 253202 29 100.0 32 ............................. GCGCTGAATTGTTCCCACGGTACGACGGTCTT 253141 29 100.0 32 ............................. ATCTGTCATGGGTGGAGCGCTGCATCGCAGAC 253080 29 100.0 32 ............................. GGTGCGGTCATTTTGTTCACCGCACCCAGAAT 253019 29 100.0 32 ............................. CGCGGACGGTAGCCGATGTGCTCATCCTGTTC 252958 29 100.0 32 ............................. TACAGGTCGCCATTAAAGGCGTAACGAAATAC 252897 29 100.0 32 ............................. CCCGATTTCAACCGTGACGCTTTCGCCCTGAC 252836 29 100.0 32 ............................. CCGTAAAGGGGGTGCGTCCTGATACTCCTGAA 252775 29 100.0 32 ............................. CCGGAACGCTGGTGTGGATGGATGTATTTCGG 252714 29 100.0 32 ............................. GATTCATTGATATCAGGAATCTCAACATCGTC 252653 29 100.0 32 ............................. GGTACGTTTTTAATGAGTGTGTTCATGCTCTG 252592 29 100.0 32 ............................. CAACACTGTGACAAACGTCATAACATCACCTC 252531 29 100.0 32 ............................. GTTACTGCGTAACGGCGAGTCTTTAGGCCCTA 252470 29 100.0 32 ............................. TCCGATTTTTGTACATGGTACGATTCTTATAT 252409 29 100.0 32 ............................. AATATTAATCAGCAAATGAGCGATTATGCGGA 252348 29 100.0 32 ............................. CTGTGGCGGCGCTGATTATCTGGGGTGGACGT 252287 29 100.0 32 ............................. ACGTTTGTAACGGTGTTGCTTGTTTTCTGTCT 252226 29 100.0 32 ............................. TTTTCACGGTACAGCACGCCTACAGCGACTAT 252165 29 100.0 32 ............................. GTACGCTACGCCGCCTGGGTAATATCGCTGAC 252104 29 100.0 32 ............................. TTGATTTTTCTGTTAGATCCTTTTTTGACGTT 252043 29 100.0 32 ............................. ACATTACTGTCCGGCGTGTACTCCCCTTTACG 251982 29 100.0 32 ............................. CAGCGGAGTTCGTGAGAAAAGGGGAAATAAAA 251921 29 100.0 32 ............................. CGCGGCGAAGCGGTAGTATTTAGCGGCGATAC 251860 29 96.6 32 ............................C TCAATCCAGGCCTCTCCCCATGACAGACGTTC 251799 29 96.6 32 A............................ ACGGTATAGACGCCGATACCTACTTTGAAATG 251738 29 100.0 32 ............................. CCTTTCTAGTTTTGACGCTATATGCACAGGAT 251677 29 100.0 32 ............................. TGGCGCACTGCGCGCTTTAAGGCAATCATTCG 251616 29 100.0 32 ............................. CCTGGGTAGTCAGGTTAACGGAGTTTTTGAAC 251555 29 100.0 32 ............................. ATTAATCCCGGCGTATCAGCTTGAACAACCCC 251494 29 100.0 32 ............................. TTTTACCCCCCGTAATTCGCCCGCGCTGGGTT 251433 29 100.0 32 ............................. CGCAACCGCCAGGCGTTTAACACGATATCCAC 251372 29 100.0 32 ............................. GTGTGCTGAATCTTGACGATCTGAATAACCGC 251311 29 100.0 32 ............................. GCAAAGCACATCCTGCCGTTATTCCCCAAGCA 251250 29 100.0 32 ............................. CGTAAATATAATCGCCTGTCTAAACTCCGCGC 251189 29 100.0 32 ............................. GAGATCGTTTAAGTTGTAGCGTCCGTCCTCAT 251128 29 100.0 32 ............................. CCGATGGACTATATGTGTCTTGCTCCCTCTTA 251067 29 100.0 32 ............................. CCAGTTTGTGAGTATTGATCCCGTCCTGCTGT 251006 29 100.0 32 ............................. CCCTTTGGGGAATTTATGAGGCTCCCGCGCGC 250945 29 100.0 32 ............................. CACTTGCTCTCGCCATCAAAAAGGGCGGGAAA 250884 29 100.0 32 ............................. GCTGACATCAATTTGTTTAAGCCCAAAGACCA 250823 29 100.0 32 ............................. CAGGTAAATCGTGTCGGCACATTCCAGCATTG 250762 29 100.0 32 ............................. TGCCAGCGACAGGCGGTCTCCCGCCAGAATAT 250701 29 100.0 32 ............................. ACCGATAGCCTGTAGCTGCAGGTAGCGGTTAG 250640 29 100.0 32 ............................. TGTACATCATGAATAATGGTTCTGTTATGTAT 250579 29 100.0 32 ............................. AATTGCCGGAGTTGTGAATCTGCTCATGGTAA 250518 29 100.0 32 ............................. CGAACTCTCATTTCTGTATGAAGACGAGATTG 250457 29 100.0 32 ............................. TGTCTCAGGCGGCAAAATCCTGGGATACCTGT 250396 29 100.0 32 ............................. GCTGCTCAGGACGCACCGGATGACCTTCGCGT 250335 29 100.0 32 ............................. GTTAGTGTGTCCGGGCGCTTCAGATGGACTGT 250274 29 100.0 32 ............................. CCAGCATACAGGCTCTTGCGGCATCGTTAACG 250213 29 100.0 32 ............................. TTAAACGCAGCGATTACCAGAAAATAGCTACC 250152 29 100.0 32 ............................. TAGGAAATCCAGATAGCACCGAGTTTCATGCT 250091 29 100.0 32 ............................. GTTTTTGGCTTGCTCATAACTTCACTCCTATT 250030 29 100.0 32 ............................. GCGTCCAGTTCTTCACGCATCGCCGCTTTACG 249969 29 100.0 32 ............................. CCATTATCGGAATCCTGCGCAGTCTGCAGATT 249908 29 100.0 32 ............................. ATAGCGCCAGTTTGGACGATAGCTGATAAGAA 249847 29 100.0 32 ............................. CTGAGCCTGTTGCGTACATTTTCAGGCATCCA 249786 29 100.0 32 ............................. TTCGCAAAAGAGGCTGATGAGCGTTATGTCGC 249725 29 100.0 32 ............................. GATGTACTGGTGGGAATACCTGAGGATAAGGC 249664 29 100.0 32 ............................. CCTTTATGCAAACAGAAAGGGATTTAATTTAC 249603 29 100.0 32 ............................. GTGAGATTACTATTTTCAAAGGTGATTCTTAT 249542 29 100.0 32 ............................. CGGCGAACCCCACGCTGCGGTAGATTTGCCCG 249481 29 100.0 32 ............................. TTTCTCTTTAATTGATGAATGGAGGTTACAGT 249420 29 100.0 32 ............................. GCAAATCCACTCGGAAGAATAAAAGTCACCAA 249359 29 100.0 32 ............................. CGCTGGTTTCGTTCCGGTTCCCGCTACCTGTT 249298 29 100.0 32 ............................. GCTTCAATAACATCGTCAGCCTTGAGATATTC 249237 29 96.6 32 ............T................ CCGTTCTTCTTCCGGTATGGCGTCCAGACGCG 249176 29 100.0 32 ............................. GTGAAACACGGCATCACGCTTTCAGGCAGTGA 249115 29 100.0 32 ............................. GTGAAACACGGCATCACGCTTTCAGGCAGTGA 249054 29 96.6 32 ....................A........ GCCAACAACATTGAGCCAGCTATCTCGGCGCA 248993 29 100.0 32 ............................. TTATTTCTTCGTCTGTTAGTTTGTTATTTTTC 248932 29 100.0 32 ............................. ATGATTTTCTCCTCAATTACCCGCTATAATAC 248871 29 96.6 32 .............T............... TTTGCGCTCGCTGACGTCAACAGCTTCTACGC 248810 29 96.6 32 ............T................ CTGCCGGTCAGGCTGCTGAAGTTACTGTGGTC 248749 29 86.2 0 ............T............G.TA | ========== ====== ====== ====== ============================= ================================ ================== 95 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGCCTGGGCAACAAATACGGAGTCAGGTTTTGAGTTCCAGACCTGGGGGGAGAACCGCCGTATTCCGGTAGATTTGGATGGACTCAGATTAGTTTCTTTTCTTCCCGTTGAAAATCAATGAGTTGAATGTTCTTTAATAATAAGAAATTGTTATCTTAATGTTGGTGGATTGTTGGGTGGCAAAAAAGGCTTTCTGGAACAAATATATAGATTTAG # Right flank : TTTTTACCAGCAGATCAGGATGTCTTTTCCGTCTTCGCCAGCTCTTTTACTAGCGGCAGCATTATCCGTACTACGTCGCGACTACGGCGCTCAATTCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAAGCATTTTTCGCGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTTGTCGCCTCAACGGAAAGCACAGAAATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGAGCCCCGGATTGGTGCTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGATTATCGAAATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //