Array 1 6231-4875 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKMV01000010.1 Listeria monocytogenes strain NRRL B-33184 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6230 36 100.0 30 .................................... TCGTTCATATCCTGACACGCTCGGGCTTCT 6164 36 100.0 30 .................................... TTTATAACCACCAGTTGCCTTCGTTTGTTC 6098 36 100.0 30 .................................... TTTCATCCTTTTTCATGCTTTTGTAAAAGT 6032 36 100.0 30 .................................... GTGTCACTGCACCAATGACCTCGTGTTCCG 5966 36 100.0 30 .................................... TCGAATTTACGAGCATACTCCTTTGAGCTC 5900 36 100.0 30 .................................... ATTTGAGCGACAGAGAATTGATATACGAGA 5834 36 100.0 30 .................................... CAGATACCCTGTGTATATCCTGTATAATCA 5768 36 100.0 30 .................................... TGAAAGTAATGAATTATTCAGAACCAAGAA 5702 36 100.0 30 .................................... ATCCTTGACTTTATCCTTCGCTTTGAGAAT 5636 36 100.0 30 .................................... TGTCGCCATTCCCGATTGGAGGTATTTCGT 5570 36 100.0 30 .................................... TCCCGTAATGGTCTTAACTTACAATTTTGA 5504 36 100.0 30 .................................... CGAAGTATAAAGGAATGGTCTACCCTTTAA 5438 36 100.0 30 .................................... TGGAATGATTGATAAAGTAGCGAAATTTAT 5372 36 100.0 30 .................................... TATCATAGTAGCATATAAGTTGTGCCCATT 5306 36 100.0 30 .................................... TGATTATTGTCCGCAATGTTTCGAGTGCGA 5240 36 100.0 30 .................................... CTGTTTGGATTGGTGTTTTGTGTCGCAGTA 5174 36 100.0 30 .................................... CATTTTTAAAACCTCGCCCACGGAACAATA 5108 36 100.0 30 .................................... AGTTTCTAGTCTGGAAGCCACACTGGAAGG 5042 36 100.0 30 .................................... ATCGATTCGTTTATTATCCACAAAAGCATT 4976 36 100.0 30 .................................... TGCACGTGTTAAGGGAGTCATGTTCACGCA 4910 36 75.0 0 .........................A.C.ATGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAATTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AGAAAAAAATATTTTCATAAATCAGGTCTTAGTAGATTTTAAAAATGACTACAAAATTTTAAAAGGGAGATTCCACAATGAAAAAGACATCAATCATTTTTATTTTTTGCGCATTCCTCCTAACAGCTTGCTCAACCACCCAAAAACAAACACAAACCACGGAAGCTATCGGCACAATTGAACAAGTAGAAACGGAATCAGTTTTAATCAAAAATTTCAAAATAAAAAACGATAATAACACGCCAGAACTGAGTGTGCGGTTCCACATCAGTGAAAAGTACCATGACGAAACGGGAAACAAAATAAAACGAACCGAACTAAACAAAAATGACAACATAAAAATCATTTTAACAAAAGATTTCCCAATTCAAGAAACCTCACCAGCCCAAATAGACCCAAAATACGTACAAAAAATCATCCTGCTAAACAAATAAAACTCTCTCGCCCACAGAGAGTTTTTTCTTTTCTTAAAAAAACAAACTCAAATTCCTTGCCTTGGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //