Array 1 504973-505793 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUI01000002.1 Salmonella enterica strain CFSAN071955 CFSAN071955_S7_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 504973 29 100.0 32 ............................. GGCTTTTTGTTTATGTGATTTTTATATAACCA 505034 29 100.0 32 ............................. GAAAATCTGCAATAGCGGCGGCCGTTGGTAAT 505095 29 100.0 32 ............................. GCAAAAATTCGATACTTGCAGCAGGTCGGCAG 505156 29 100.0 32 ............................. GCAAAAATTCGATACTTGCAGCAGGTCGGCAG 505217 29 100.0 32 ............................. GTTGCCAGTATTACCGGCCGGGGTATCGACGT 505278 29 100.0 32 ............................. GGCATTGCTTTATCATTCGACCCTCCTGAAAG 505339 29 100.0 32 ............................. TTCTCTGTTCTTCCAGAGAATCAGGGCAATAC 505400 29 100.0 32 ............................. CAGATACGGAGGGGAAAGGCCCACAGGAGAAA 505461 29 100.0 32 ............................. CGTGATGCCGGCTACGCGTCAGCAGACGTAGC 505522 29 100.0 32 ............................. CGGGGGTCATTCACTGATCTTGCTGAGAAGAT 505583 29 100.0 32 ............................. GAATTGGCGAAACGGTTAAAAAAGGCTATTGA 505644 29 100.0 32 ............................. ATCTGAGAAATGGTGCGCACCTAAATACTACA 505705 29 100.0 32 ............................. TGGCAACCAGCGTGCTCGATTCGTGGGATGAG 505766 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTCTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGTGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 521939-524533 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUUI01000002.1 Salmonella enterica strain CFSAN071955 CFSAN071955_S7_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 521939 29 100.0 32 ............................. ACACCAGCTACCGGCGACGCCTGCAGGCTGCA 522000 29 100.0 32 ............................. GAATCCCAGATTATGACGCTACAGTTGTCTAT 522061 29 100.0 32 ............................. ACGGGGTGAGCACCAACGCCTCTCCGGACGAC 522122 29 100.0 32 ............................. TTATTCCAAGTTGTTTAAATCCCCCCTGTGCC 522183 29 100.0 32 ............................. CCTGTACCTCTCCTGTAAATGTTCCGCTAGTT 522244 29 100.0 32 ............................. GTTTTGAATCAAGTCGGTGCGCTTGCATTGTT 522305 29 100.0 32 ............................. GGCGAACTGAGCAAATACCTGATCAGCCGAGG 522366 29 100.0 32 ............................. AGATTGATTACCATTTGCATGTTTATTAAATG 522427 29 100.0 32 ............................. CTCCTGTATCCATTACAGTGACATGATATACC 522488 29 100.0 32 ............................. TGTTTTACGGTCGAGCCGTCTGCGGCGGTCGC 522549 29 100.0 32 ............................. CCCTATCTCAACCTGTTTGGCCTTTCTTGGCA 522610 29 100.0 33 ............................. CGCATGAATAACCTGTTACTGGAAAATTCCAGC 522672 29 96.6 32 ............................T GACAAACGCACAGTTTGTTGATAACAAAGTCG 522733 29 100.0 32 ............................. TTGTCATCTTCCTGGTTATTGTCTGGATCACG 522794 29 100.0 32 ............................. GCTTATCGGTCTGGTTTGCCATGCGCTGCTGT 522855 29 100.0 32 ............................. TGATATAGCCATTTGTAAACGCTCGCTTGGGA 522916 29 100.0 32 ............................. TGCTCATATTTTTCCCCTTATGCAGTGCGAAG 522977 29 100.0 32 ............................. CTGCGGTGCGTAAACGTGGATTAACGATGCGG 523038 29 100.0 32 ............................. CCTATTTCGGGCTGGCGTCGCTGGACGCGTGC 523099 29 100.0 33 ............................. GGCTGGATCGACGGGGCGACCGTGTCGGCCAGC 523161 29 100.0 32 ............................. CCGTTGAATTTAAAAAAGATTGGCTATTCGTG 523222 29 100.0 32 ............................. GGCGGCCTGGTTGGTAACGTAGATATCCCCAA 523283 29 100.0 32 ............................. TGGGAACCGTCAAGGCCCGAGGGTGACGGCTG 523344 29 100.0 32 ............................. GGCCGTATAAATGGCAAAACGTAAAAAACAAC 523405 29 100.0 32 ............................. CGATTCAATATCAGCGGCCAATTCCGCTAACG 523466 29 100.0 32 ............................. ATGAATGATTTCATCGATCGTCCAATCGACCT 523527 29 100.0 32 ............................. CGTGTCGAATGTAACGCAGCGCATAGCTGATA 523588 29 100.0 32 ............................. TTACGCTGCGAATTAACGGGCAGGATTTTGCG 523649 29 100.0 32 ............................. CCGTTAACGCTACCGCAGGTATATGAGATCGC 523710 29 100.0 32 ............................. CGTCCCGGTAAATCTTTCTACGCGCCTGATTG 523771 29 100.0 32 ............................. GGGAGCCGCCGGGCTCCCCATTAAACAGGAGT 523832 29 100.0 32 ............................. GGCTGTCTAATCGTAAGCGGAATCAAGTTTTA 523893 29 100.0 33 ............................. GAGCTGGCGGGGGTTGACGTCACGCTGGTTTAC 523955 29 100.0 32 ............................. AGGAAATCAAGGCCCGCAACCGGATGCTGTCA 524016 29 100.0 32 ............................. GAAGCGGAAATCGCATCCGGTAATGCCGACAT 524077 29 100.0 32 ............................. TTAAATCTCCATCAGGAGCATGGACTATTTCA 524138 29 100.0 32 ............................. TAGATTCAACAGCGCTCGGAAAAGACGCGTAC 524199 29 100.0 32 ............................. CGCGAAGCGGCGGCTGCGCTGGCGGACAGTAC 524260 29 100.0 32 ............................. TGTATGAGGTCGATCAGGCCCAGCTTCAGATC 524321 29 100.0 32 ............................. AGTCATCAACCGGCTTTATAGGGTGCGGAATG 524382 29 100.0 32 ............................. ATTTGAGTGCGGACGACAACGTGCAGGTTGTG 524443 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 524504 29 96.6 0 ............T................ | A [524531] ========== ====== ====== ====== ============================= ================================= ================== 43 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //