Array 1 17221-18838 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJHNY010000015.1 Clostridium perfringens strain P201 CP20-1-S6-103121_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 17221 36 86.1 30 A...C.TA..A......................... TAAAGAACCTAAGGTAAAACCTAAAACAAA A,A [17223,17233] 17289 36 100.0 31 .................................... CATACAATAATAGACTGTAATAGTTCCGCAA 17356 36 100.0 30 .................................... GATGGACTTAAAGGAATAGCAAGATTAGAG 17422 36 100.0 30 .................................... AATTATCCAATGTATTATTTTCAAGATGTT 17488 36 100.0 30 .................................... ATAGAAAAAAATGCTACTAACATAGATAAA 17554 36 100.0 29 .................................... TTAGAATTAGACTGTAAGGAATGTAAAGA 17619 36 100.0 30 .................................... TCCAATGGATATGGAGTATATGCCTAAGGT 17685 36 100.0 30 .................................... GCTGTAGATTATGGAGATTCAAGTATTATA 17751 36 100.0 30 .................................... TTGTTCTTTTAACATTGATGATGGTTGTAT 17817 36 100.0 30 .................................... GCATTTATAATACCTTCCATTTCCCCTGCA 17883 36 100.0 30 .................................... TTTTCTCTTAATCTTAGATAATAGAGAGTT 17949 36 100.0 30 .................................... TTTAAGAAAAAAGGTATGCAGAAACTTATA 18015 36 100.0 30 .................................... TGCTAATGGAACATATTCTATTTCTGTCAA 18081 36 100.0 30 .................................... GTGTATACTATACACAAACCATACACTAAC 18147 36 100.0 30 .................................... ACAAATTACGCTTATAACACCATTAAAGCA 18213 36 100.0 29 .................................... ACAGCTGCTAGAGTATTGGCTCAAAATGG 18278 36 100.0 28 .................................... AGAGCATATAGAAGTTATCGAGGAGGAA 18342 36 100.0 30 .................................... CAGGAATGCAGAGTTTATGTAATTTTATCT 18408 36 100.0 30 .................................... TTGGCTTGTAAGTATTCAACTGCTTCATTC 18474 36 100.0 30 .................................... TCTGATTTAGCTACTAAATTTAGTAATTTA 18540 36 100.0 30 .................................... CTAGGTAAAACTTATAAGGTTTCATATAAA 18606 36 100.0 29 .................................... TGAGGATGGATTAGCTTTAGGAAAAACAG 18671 36 100.0 30 .................................... TTGGTGTCATGATTAAAGCTGATTTGAACT 18737 36 100.0 30 .................................... ACAGAGTTGCTTTTAAAAGCCCCTCATTTC 18803 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.4 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATAATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAAATTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAAGTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAAAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //