Array 1 26241-23693 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCD01000003.1 Streptococcus mutans strain UAB-10 NODE_3_length_207822_cov_17.1397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 26240 36 100.0 30 .................................... TTGTACTAGAACGAGCTGAAATGCATGAGA 26174 36 100.0 30 .................................... AGATAGTGAAAACCAATTCAACGCCCCTCG 26108 36 100.0 30 .................................... AGGCAAATATCCTTACATGGTGCTAACTCA 26042 36 100.0 30 .................................... TAAAAAAGATGAATGAGTGGACACGTTATG 25976 36 100.0 30 .................................... TTTCCTTTATTAATTACTGTAATCAATCGT 25910 36 100.0 30 .................................... GAGCATTTCACCCTTAGATGAGTCTAGTAA 25844 36 100.0 30 .................................... TGGAATGCAAAAGCTAGTTTCTAAGGCCTT 25778 36 100.0 30 .................................... TTTGACTGACTACATTAGCGTTAGTGATGA 25712 36 100.0 30 .................................... AAAACAAAAGTGTTGAAATTGTCGCTTACT 25646 36 100.0 30 .................................... GTCGACTGAAAGACTAGCGTATTTGCCAAG 25580 36 100.0 30 .................................... TTCTATTTCATTTATATTTTAAAAAGCCTT 25514 36 100.0 30 .................................... GATAGATGACAGAGACGAAAAATTAGCTCT 25448 36 100.0 32 .................................... CATAATCTGCTTTGATTTGTATCAAAATTTCA 25380 36 100.0 30 .................................... GCGAGCGTTAGACAGATTAACTTCTGCAAT 25314 36 100.0 30 .................................... CACAGAGCAAAAAGACAAGATGACTTATGC 25248 36 100.0 30 .................................... GTTTATGCACCGCACACGCGATTATATGCT 25182 36 100.0 31 .................................... CTTCCGCTAGCGCTAAAAGGTGCCGTGTTGC 25115 36 100.0 30 .................................... AGCATGACAGGCATAGTCTTTAAAGACGAC 25049 36 100.0 30 .................................... ACTGTACACGCGCTTAGCTGCAGAAGGCTG 24983 36 100.0 30 .................................... AGTGTCCATAACGAACAGGTCACCCGCGCG 24917 36 100.0 30 .................................... TTCCATTGAGCGCCAACGCTAAGTGATTGA 24851 36 100.0 30 .................................... CTATCAAATTCTTCAAGAGCATTTCGCCTT 24785 36 100.0 30 .................................... ATCAACAGGCACACTATTTGTGTTTATCCA 24719 36 100.0 30 .................................... CGCGACTGTCTTAACTTTTCTGTAGCTGAT 24653 36 100.0 30 .................................... ATTTTTTTGTTGCTGTTCTGCGTGACATTG 24587 36 100.0 31 .................................... CCGTAAATTCGCTTAAAGACGAAAATTCACG 24520 36 100.0 30 .................................... GTATACAGAATGCAAAATCAAAAAGATGGA 24454 36 100.0 30 .................................... CTGCACTTGAGTACGTGCCTAGATAACGCT 24388 36 100.0 30 .................................... TTAGCGGCTTGACTACACCGCAAGCAGAGC 24322 36 100.0 29 .................................... GATTTCTAAGAATTTTAAAAGGTGTCATA 24257 36 100.0 30 .................................... GCAGGATTTACATGATAACGATTTAACTTT 24191 36 100.0 30 .................................... AGTGACATCAAAAAAGAATTAGAAAAATTG 24125 36 100.0 30 .................................... AGTGACATCAAAAAAGAATTAGAAAAATTG 24059 36 100.0 30 .................................... AGTGACATCAAAAAAGAATTAGAAAAATTG 23993 36 100.0 30 .................................... CAATAGAGTAGCAGCTTACGGCTATGCTAA 23927 36 100.0 31 .................................... CTGATTAAAGGTATGATTTGATGAAATTCAT 23860 36 100.0 30 .................................... TCAACAACCTAAACAGCAAAATACAAGTTT 23794 36 97.2 30 ...................................T CGGCATATATAATCCGTAAAGGCGGCACAT 23728 35 75.0 0 ..........CA.......A.TG..T-.A.T..... | A [23713] ========== ====== ====== ====== ==================================== ================================ ================== 39 36 99.3 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGGTATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : GCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 127449-125773 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYCD01000003.1 Streptococcus mutans strain UAB-10 NODE_3_length_207822_cov_17.1397, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 127448 28 100.0 33 ............................ CGAAAGGCAGTGATAAGACAGCGGCGTTTGTAA 127387 28 100.0 33 ............................ TAATCAAATTCTGAATACTTTGCTTAGTAAACA 127326 28 100.0 33 ............................ TGAAATTTGAACCATCAGCTACATCTGAAATAG 127265 28 100.0 33 ............................ TGATAGCTTAGCAGTATTATGCTGTTTACTGTT 127204 28 100.0 33 ............................ CAGGTGACAGAATACGTGTTGATGTGTCAGATA 127143 28 100.0 33 ............................ TCAACCGTTTCGTCTTTAATTTTTCCAAGTGCA 127082 28 100.0 33 ............................ TACAGACGTTGCTTTCCAAATTTGGGGCAGTGA 127021 28 100.0 33 ............................ TATAATCAGAAAGATGAAGAAAGGTGGTGGCAA 126960 28 100.0 33 ............................ TGGCCTCGAGCAATTAGCGCATGGATTAAGCGA 126899 28 100.0 33 ............................ TGTTCTTGCGCCCGAATTGGTCATTGATGGCTA 126838 28 100.0 33 ............................ TCGCTTTTGTGATTGCAAACAATCCATAATCAT 126777 28 100.0 33 ............................ TTAACGCTTGATTTTGTATATCGTGATTATCAA 126716 28 100.0 33 ............................ CGAGTACCCAAAAGTTTTAGTGCCATCATCGTC 126655 28 100.0 33 ............................ TACGGTTCAAACGCTTGTTGACAATAATGACGT 126594 28 100.0 33 ............................ TACGTCCGTCACGATTGCTATTAAAATCAAAGT 126533 28 100.0 33 ............................ TCACAAAAGCAATTGCTAAGAATACGGTTCAAA 126472 28 100.0 33 ............................ TAGCCGTATACTGTGCCGTCATTTTGGATGAAG 126411 28 100.0 33 ............................ CAGTTTGATGAGTGTTTTGACGTAGAGGATTTT 126350 28 100.0 33 ............................ CGCAAATTAAGGTGTCTCTCATGCATTTTAGCG 126289 28 100.0 33 ............................ TATATTTTTCCCGTTGAGGTAAAAGCCACCAGT 126228 28 100.0 34 ............................ TCACTAATAAGAGCTAGACTAAGAGACGGCTACA 126166 28 100.0 33 ............................ TAGCCAGTTGACTCAGTGAGCTTAATTATCGTC 126105 28 100.0 33 ............................ CGCTGAGATGGTGTCAATGTGTCCGACCGCTAC 126044 28 100.0 33 ............................ CTGGAGGACTGCAAAAAAATTCTATTTTTTGGG 125983 28 100.0 33 ............................ GACTAGCTGCATTATCATTATGACAGGTGATCA 125922 28 100.0 33 ............................ TAACCAAATCTTAAACACTCTGCTTAGTAAGCA 125861 28 100.0 33 ............................ TGAGTTTCTAGAAATTCTATAGCGTCTCTCAAT 125800 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 28 28 100.0 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGGCCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTACACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTAAGTGGATGACAATAAAAGTAAAATATTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGCGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGTAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAGATGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //