Array 1 20830-21835 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQW01000032.1 Lactobacillus crispatus strain UMNLC6 crispatus9I3S1914, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20830 29 96.6 32 ............................C AATTTAAAAGAATGTTTGTTCGATGATTTAAC 20891 29 96.6 33 ............................C TATAGATTTGCTCTTCATGAACTATGTCTGTTA 20953 29 96.6 32 ............................C AAGCCAGCAGAAAAGGCAGATAGCACTCAAGG 21014 29 100.0 32 ............................. AGTGACATATGTCCGTCTAACAGGACTCATCT 21075 29 100.0 32 ............................. AAACATGTCATGGAATGAACCATTTTGAATGT 21136 29 100.0 32 ............................. TTAAGTGATAAGAAAGATCAAGAAATTGATCA 21197 29 96.6 32 ............................C ACATAACCCGAGCCAAAACGCAAAAGAAAACT 21258 29 100.0 32 ............................. ATCTTTTACAAGGCGGAGATTTGAGCAACACT 21319 29 100.0 32 ............................. GATTGCACCTATGGCAGTGATTGCGGCTGTTG 21380 29 96.6 32 ............................C ATCATTTAGAGCCATGCTTTAAATCCTCCTTT 21441 29 100.0 32 ............................. TGTATCAATGCTAATAAGAACGTTTTACCTGG 21502 29 100.0 32 ............................. TGTCATCACATCTGTAGATTTAAAAAGATTGG 21563 29 96.6 32 ............................C AATGCTCAAACGTTAAATTTGGTTGATAAAGA 21624 29 100.0 32 ............................. AATATCATCAAGCTGGCTAATTACTGATTGTT 21685 29 93.1 32 T...........................C CATCACAAAACATAGTGAAGCAGTTACACCCA 21746 29 96.6 32 .............A............... ATCTCTAGTAGCTCCTACAAAAACATCAATAT 21807 29 86.2 0 .............A.........AT.G.. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.4 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTCTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGAATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : TATATTGGGATTCCTGAAGAAATCATGAATGTAATTATACGAGACCACAAGGAAAAATTTTAAAATCTCAGGCTTCTAAAAAGCAAAAAGAAATTTTTAATAGTTGGCAGGAAAAATGAAAGAAAATATGTAAAGACAACTAAAATAATCAACAGAGCTGCTCTTGGAATATTTATTGTTGCAGTAGTAATTTTTTATTATAGGGTTAGTGAAGTAAAATGACAGTTAGTGAAGCACAAAAAAAGACGACTAAAAAGTGGGATACCAAAAACAAAACTCGAAAACAGTATTTAAATCGGTTACTAAAAATTTTATTTTGAAAGAAGCCACCACAGAAGACCTTGAACAAATTAAAAAGTATTTTGGGCAAAGAAAACACGGAAAAGATTGATTGTGGTAGAAAACGCTGCATGAATAATTGTAATTTTTAGTAAAAAGTTTTGGAGGTACTTTTTAATGATTGATTTAAATAGTTCAGATATTATGGACGCACAAGAAGC # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 156-5 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQW01000005.1 Lactobacillus crispatus strain UMNLC6 crispatus9I3S19113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 155 29 100.0 32 ............................. AATTTAAACGTGCTAGAAATGAATAATTTTAA 94 29 100.0 32 ............................. ATGCTGACTACCAGCTTTGAACATAGAACCAA 33 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GTTTACACCCAACACCAGAAGATGCAAGTAATGATTGTTACTCAGCACCCACAGCATATTATCGATGGAATTCAGAATCGAATGCATCGTGGAATCACTATTTTGCACGATGCTGAAGGTGCATATAGTCATATTGAAAAGACAGTTTTGATTACCATTATTGATCGATATGATATGTATGATATTCGCCAAATCGTGCAAGGAGCAGATCCGTATGCTTTCATGAGTGTTAGTGAAGTTGAAAAAGTATATGGTCGCTTCAAGGAGCAAGAAATCGTTTAATGGATAGCCCTTAAACCTTGATATATAAGGATTTATAAATGAAATTTGAATCCTAGGGGCACTTTGGGAGCAAAACTATTCAAAAAGAAGCAGAAATGCTTCTTTTTTATTTGGAGTGGCTTTTTGTAATTATGGCTTTATTATTGGTCTTTGTTAAAAGTGATTAAAAATGATATTATTTCGATTGAGAGATGTTGATATATCGTGGATCATTTAGT # Right flank : CTGTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.50,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20-721 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQW01000038.1 Lactobacillus crispatus strain UMNLC6 crispatus9I3S1915, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 20 28 82.8 32 ..G..A....T............-T.... TTGAGTGGTGAGAAGGTTGAGGAAGTTGTTCT T [40] 81 29 96.6 32 ............................C AATTAGGAGGGTTCGAAAGGCTAAAGTATATT 142 29 89.7 32 T........G........A.......... TGTGTTTACAAGTCGGTGATTTGAGGTATACT 203 29 100.0 32 ............................. ATTAGCGATATGAGTTGCATTTAATGCACCTA 264 29 96.6 32 ............................C TTCACTTTCTTGCAAAAACTTTTTAACTAGTT 325 29 100.0 33 ............................. GACAAGGTTGACCAAGCCGTTAAGACCATGCAA 387 29 96.6 33 ............A................ GACAAGGTTGACCAAGCCGTTAAGACCATGCAA 449 29 96.6 32 ............A................ TAAAATAATTAAGGAGGGAACTCCAAATATCG 510 29 93.1 32 ............A...............C AATTTCTTCCTTCGACATGTCCTTAAGAGCAT 571 29 89.7 32 ...........ACA............... GACAGCTCTGCTGTAGTGATCGAATCAGACAA 632 29 86.2 31 .....T.....ACA............... CCGACGGGGTACCCCGCGGCTGTCCATCATC 692 29 72.4 0 ...........ACA.........A.ATAG | C [714] ========== ====== ====== ====== ============================= ================================= ================== 12 29 91.7 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : AATTCGGTATTTTGTATTTG # Right flank : GCTGCTCTGAAAAATATGTTCTATAGAGTGACTGTTTTTGTATATTATTTAAAAATATTGTTGATGGTGCACGGAGATTGCGTTCACTTATATAGTGAAAAGATGCTAAGAAATCTAAAATAGAATCGAGATGAATTGGTAATCTGGTAATCGTAAGAAGGACTTAGCTACTAATCGTTGTATTCAATTTTGATAACAAATTAGTTAAAGAGCAAAAAATATGAAGAATTATAAATTTAATAAGTTTATGTAAAAACAGTGTCATTAAGTTAGGCTATTGATTTTGGTGAAAAAACAATTAAAGCATCATTTGGCTTTAGACGGCCAGATTGATGCCTTTTTGGCATATTTTTCTAAATATCATTCGCGTTACACGTAAAAGCGTGTGTTGTATATAGTGAAAGGAGGCTAAGAGAATCGGAGCTAAGAGGTGACAAATATGCCGAAAGCCCAATTGCAAAGTGCAAAAGAAAAAACCACAAATCAAAGTTCACTTCAAG # Questionable array : NO Score: 5.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : GTATTCTCCACGAGTGTGGAGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [9-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5253-7477 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYQW01000038.1 Lactobacillus crispatus strain UMNLC6 crispatus9I3S1915, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5253 29 96.6 32 ............................C TTATCAGTAAAAAGATAACCGTGATAAGTAAC 5314 29 100.0 32 ............................. GTTCCATTAGTGTTAGAGTAAACACAAATCAT 5375 29 100.0 32 ............................. GGTAGGAAGTAATCCCACCATTAAATCATCAT 5436 29 96.6 32 ............................C TTGATCTCTGCGCACAAGTTCACGCTTGCAGT 5497 29 96.6 32 ............................C GCCTGCTGCTCGTGCCAGCTTAGCAATTCACA 5558 29 100.0 32 ............................. ATCGATGTTCATTTTATGCTTCCAATTCAAAT 5619 29 100.0 32 ............................. TAAATTCTAATCCTTGTTAGTTGTCTTATATA 5680 29 100.0 32 ............................. CACCTAAATCAATACCATCGCCTTCTGCGCCT 5741 29 100.0 32 ............................. ATCGGTGCTGTTGCCGTGGTGTCTAACGCTAA 5802 29 100.0 32 ............................. ATAGCGTCCCAAAAGCCATAAGACAAAAGGCT 5863 29 96.6 32 ............................C ATGCTTAAGGGTTAATTATGTACGAATTAAGA 5924 29 100.0 32 ............................. AATCTGCTACTTTTGCTAAATCTTTTCCTTTA 5985 29 96.6 32 ............................C ATCGGTGACGATGACACGCAATTACCATTATT 6046 29 96.6 32 ............................C ACAAGAAGAACAACAAGAAATTGAAAACTTAT 6107 29 96.6 31 ............................C CAAATTCCCATGCGTCCATTAATACACTAGG 6167 29 100.0 32 ............................. GTTCTGTTCTCCATTTCCTTTTCTGGCTTTAG 6228 29 96.6 32 ............................C AAAATAGGCTTATCGTATTCGTCCATTCTAAT 6289 29 96.6 32 ............................C TATTGTATCTACTCATGTTGACGACAGTGGTG 6350 29 96.6 32 ............................C TACTCAAAATCTTGCTTTGACCAAAGCTGTAA 6411 29 96.6 32 ............................C ATTTTTCTGCTTAATGTTACCTGCAGTTGATT 6472 29 96.6 32 ............................C TAATGACAGCAAAGACAAGTTTATTTATTGGC 6533 29 100.0 32 ............................. CATTTAGTCTCATAAGTGGCAACTGGCTGTCT 6594 29 96.6 32 ............................C GTGTCCTTGCTTAATGTACTCAATATACTTAT 6655 29 100.0 32 ............................. AACTGATCTACTTGCATGAACTCTTTTAGTCA 6716 29 100.0 32 ............................. TGACTTCAAATGAAACATACGATGGAGATCTA 6777 29 100.0 32 ............................. GTCACCACGGAACGTTAATTCTTCATGGTGAC 6838 29 100.0 32 ............................. ACGTTGTTATGAGTTGGCGCACCGTCTGGCAC 6899 29 100.0 32 ............................. TAAAGTAAATCCTAAAACCGTTACCCGTGAGA 6960 29 96.6 32 ............................C GGATGATCACTTAAGAGAAAGGATTCTTAAAA 7021 29 100.0 32 ............................. GATTAAAGAGCAGTTGGAGGACTAATGAAGTT 7082 29 100.0 32 ............................. AGCTAAATCTCTAAAACTAGTTAATTCTTCAG 7143 29 96.6 32 ............................C AAAATTGCAAAAACTAGAAAGAAAAGTGAAGA 7204 29 100.0 32 ............................. ATTAATGTTGTTGCTTATACTCATACAGTTGA 7265 29 100.0 32 ............................. GAAGAGAAGTGCTGCTAACCGTAATTATTGCT 7326 29 100.0 32 ............................. TAATGGCGTTGGTAAATAATCTTTGTAGTAGG 7387 29 96.6 32 ............................C AATCTAGTTTATGATACAATAAACACAGATAT 7448 29 86.2 0 ...........A.....T......T.A.. | A [7469] ========== ====== ====== ====== ============================= ================================ ================== 37 29 98.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : GATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACCTAAGCTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGACAGACAAATAATATTTTTGTTTATTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCAATCACCAAAAGAGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGATAACGTGCTGGATTTTTAGGTTGTATAGATAAGTGCCCGTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTGAAACTGTCAAATCTTTTGTGTAAATAGATCTTTCTCGTAAATTGATTTTTTAATTATTTATTTAATCAAAGTAGGATTCTAAGGTGTCCTGAACCTGACCGAAGCCTTTATGAATTCGATTGAAATAACGGTCATTGTAGCTCATTGCCTGAATACCAATAAAAGCATCAAGCGACTGTTCAGTTGGAAACTCTGCCTTAGGCTT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //