Array 1 286500-287440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHO010000003.1 Akkermansia muciniphila strain CSUN-59 AmI assembly_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 286500 31 100.0 34 ............................... CTTCCCTGACCCTGTTGTCCTGGATGCAGGGCGG 286565 31 100.0 33 ............................... TTGGAAGGGCGGTGAAAGTCCCTTCCATGAGGG 286629 31 100.0 34 ............................... CTCGTCATACTCGGGCAATCCCATATCTTCACAA 286694 31 100.0 34 ............................... TATTTGGTTAGAGTTATTTGACGGGTTCCGGGGG 286759 31 100.0 34 ............................... CCTGATGCCGGGAAAACAGTTTCCCGGCATTACC 286824 31 100.0 34 ............................... ACAGTGACGAGGTTCTCGGCGACTTCTGCCATGA 286889 31 100.0 34 ............................... TGTTAATGCCCTGCCATTTCCCCGGATGACATTT 286954 31 100.0 36 ............................... TTCCACCATGAGCCGTATCGCCTCACAGCCGGAAAT 287021 31 100.0 34 ............................... CGCATACTCATGGCATGCGCCCGTGTACTTGCTA 287086 31 100.0 33 ............................... CTGTCGGAAGAAGCCCTGATGAAAAAGTTTGGC 287150 31 100.0 34 ............................... CCGGTAATCGGAATCGACGTGATAACGCGCCCGG 287215 31 100.0 35 ............................... GGTGCCGGATTATAGCAGTTTTCAAAACATTGCTG 287281 31 100.0 34 ............................... TTCCGCGATTTTATCCCGCACTTGCCGGGCAAAA 287346 31 100.0 33 ............................... GTTTTACTGCAACAAAAACAAATGGGAATTTGT 287410 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 15 31 100.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGAGGAAGACAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CCTGCTAAAAGTGGAATGTGTAACGTGACGGCGAATATGGTGAAAATTGACAGAAAGATGGCGAATTCACCTTTGAACGCCACCCCGTTGCATCCCCATTGCAACCTGGTTGCCCCTCCCTTGAAAACGGCTTGAACTGGCCCCCCCTACTCCCCGATCACGTTCCTGGCGGCCAACTCGTCAAATACGCGGATGAACTCTGCTGCGTCCATCTGCTGCCGGGGCATGTGAAGAGTGCCCAGCGTCACCACGTCCAGCCGGTCATATTTGGCTACTGCCGGCATCGTTGGCCAGCGGTAGGCCGCCCAGCGTCCCTCCGGTCGTGATGCCGACCAGGGACGCTCAATGTGAAGAGGAACCCCTGCGGCCATGGCCAGGCGTCCCGTTGCTATATCCTCCGGATCGTCACTCCCAATGGGCAGCCGGTCCAGAACCGCCAGCATCCGGCGCAACGCGGCACCCGTGAACCCGTAGCACAGGCCGCACATGATCCGTCCGTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2164-521 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHO010000019.1 Akkermansia muciniphila strain CSUN-59 AmI assembly_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 2163 33 100.0 35 ................................. CGGCCATAAACGTATTGCCGCCCTCAAAAACGTTA 2095 33 100.0 34 ................................. CCCGGACTAGTACCGCTGTACCCGGTTTGTAGTG 2028 33 100.0 33 ................................. CATGTATAAGTATTTTTATTATAGGTGTAGTTG 1962 33 100.0 35 ................................. CATACGGTCCCGGCTTCTCTCCCTGTGCGTGGAAG 1894 33 100.0 34 ................................. CCGCTGCTCCTCAAAAGTCCCGTGGCCGGAATTG 1827 33 100.0 34 ................................. TCTCTCCCTTCGATGAATATACTTTAGTATTATT 1760 33 100.0 34 ................................. TTTATGAACTGGATGAATGATTTCCGGGGCATGG 1693 33 100.0 34 ................................. TACATGGAACATTTACAATTTAAGGCCAAAAGAA 1626 33 100.0 35 ................................. TACGTAGGCAAACCGTTTCGCCCCTTCATAATAGT 1558 33 100.0 34 ................................. TAACTTAATCGGATTGCTCATTGTTTTATTTCTT 1491 33 100.0 35 ................................. CGTCACCTATGGCGCAGGCCTGCCCGCCGCACAAG 1423 33 100.0 34 ................................. AAGGTCTTCAAGGGCAGGGGCAACGTCAAACGAA 1356 33 100.0 34 ................................. CACATGGAACATTTACAATTTAAGGCCAAAAGAA 1289 33 100.0 35 ................................. TGTCACCTACGGCGCAGGACTGCCCGCAGAAAAGG 1221 33 100.0 34 ................................. CTCGGTCAGTTGTTTCTTCGACCGGAGAGAGGCA 1154 33 100.0 34 ................................. CCACACATTTATCATGTCCAGGTCTTCCAGCGCG 1087 33 100.0 34 ................................. AGACTGAGGCAGGCAGGCCGGTTGCCTATTCCTC 1020 33 100.0 33 ................................. CGGGTCAGGATGCCATAAAACAGTGCGTTCATA 954 33 100.0 34 ................................. TATCAGGGCGGGGTAGTCTTTCAAGGAGAGTGTG 887 33 100.0 34 ................................. CGGTGCATGGCGTTGAAGCTCCAAATAGTGAGGC 820 33 100.0 34 ................................. ATGATATATGCTTTTTAGGTTTTCAGTTGTATGA 753 33 100.0 33 ................................. GATACCTTACCGAAGTGGACGAAGATGAGGAAA 687 33 100.0 34 ................................. TTTCATCTGTTAATGCCCTGCCATTTCCCCCGGA 620 33 100.0 34 ................................. TTCGGCTGCTTCAACTAATTCCAGGCAGGAATAA 553 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 25 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGGCAAGTGGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGCCTCCTGCTCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCTGGTTCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGTAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTTTGTTGAGTAGCAATGTATAAGGTTGGGCGCA # Right flank : CTTATCAACGGATTCAACCGTGACCAGCCCGCACCAGTGAGGAATGACAGGATAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGGAGGATCAGGCCAGTCATGAGCTATCTTATAAAAGTCGGAGCTGAAAAGAGGGTAAATGACAAGTATCTGATATAAGTACACAAGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGAGTAGGTGATAGAGCAACGACAAGGTAAAAAATCATGATAGGATGCCCCGCATGTGTACACCTACATATTGTATCCCCTTGTACGGCTCCGTTACCGTTATATCCCCAGCAGACCGGAAGAAAAAGAACCCACAAATTTATCACCTTCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGGGAAGTAAAACGACGTGCTGGGTGCGGGATATGCTCGACAACGTGTGGATTGTGATCAGGGATGAGAGAGAAGATGATTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11903-10635 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHO010000019.1 Akkermansia muciniphila strain CSUN-59 AmI assembly_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 11902 31 100.0 35 ............................... TGGAAGAGGAACTGGCGGATGTGCAGCTTGACATG 11836 31 100.0 35 ............................... TTTTGAGACGAATCCGCCGTCAACCTCCAAGGTGA 11770 31 100.0 34 ............................... CCCTAAAGACTGATAAAACCGGCGCATAGAACGC 11705 31 100.0 34 ............................... CTTGGCATCCAATTTCCCCCTATGCCCACGGAAT 11640 31 100.0 35 ............................... TACCTGTTGGACGTTTTCAATGCCGAAAGGGAACC 11574 31 100.0 34 ............................... GCTCTTAGCCACAACCACTTCCCCACGGATAGCC 11509 31 100.0 34 ............................... CCTTGTGGGATAAAGAGCCTCATAGTACATGGGA 11444 31 100.0 34 ............................... TCTGCCGGGGGAAACGGCCCCAGCTTATAGTTTA 11379 31 100.0 34 ............................... TATTTGTCAGTTGTGCGGGGGTTGTCCCCCGCTT 11314 31 100.0 34 ............................... TACTTTATCTTTCTATGTGGTTAGAGTTATTTGA 11249 31 100.0 34 ............................... TTTTACGTCATAGGTACACCAGTTCCCTAACTCC 11184 31 100.0 34 ............................... TCCTATCGAACGCATGTTGCCACCATTGACCGTG 11119 31 100.0 33 ............................... CGGCGGGTCGGCACGGCCAAAGCCCGTGAAATC 11055 31 100.0 34 ............................... CTTGGCATCCAATTTCCCCCTATGCCCACGGAAT 10990 31 100.0 35 ............................... TACCTGTTGGACGTTTTCAATGCCGAAAGGGAACC 10924 31 100.0 34 ............................... GCTCTTAGCCACAACCACTTCCCCACGGATAGCC 10859 31 100.0 34 ............................... CGATTTTTCGGATACTCCGTTGCTGATTCCACTT 10794 31 100.0 33 ............................... AGGTGGTCTCCGCGCCTCAAGGCTTGGCAAGCA 10730 31 100.0 34 ............................... CCTGAAAAGCGTGGGGAATCTCTGAGGCGCGATT 10665 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== =================================== ================== 20 31 99.5 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : GTCGTAGACTGAACGACCTAATATCCCTGGAATAAGAAGGAGCTGTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCGTCCTCGGAGACTTCAATGGAGTGGTGGACTTTCGCAGAAGAATATTGACCACTTTTACAGTTATGTTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGTGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGAACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTGCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 95660-95044 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABDHO010000012.1 Akkermansia muciniphila strain CSUN-59 AmI assembly_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 95659 31 100.0 33 ............................... ATCCAGCAGTGTTAAAATCTCCCAATCATCCCA 95595 31 100.0 34 ............................... CATGTGGAACAATTTGAACCCGTTGAACCCGTTG 95530 31 100.0 34 ............................... GCCGAAACGGTTGCAAATGCCCGCCCCGTTGCGG 95465 31 100.0 35 ............................... ATGGGGCCTGCGAGTTGTCCCACTGCAACCATGCA 95399 31 100.0 34 ............................... AGCATCAACGGATTCCAGATTGAAGGCCTGTTGT 95334 31 100.0 34 ............................... GCATAATCCTACCCACGGAAATGGTATGGCGTGA 95269 31 100.0 34 ............................... TAAAAAGATAGTAGCTTGAGGCAGGGCATTTACC 95204 31 100.0 34 ............................... TCCAACAACCCTATAACAATATAAACATCATAGA 95139 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 95074 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== =================================== ================== 10 31 99.0 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : GCGGCCTTTTTGTTTTCCTGTTTCACTCGTCTTCGTGGATAATCACCCACACGTTATTGAGCACGTCCCGTACCCATGCTGTTATCTCATGACCCTGACGAGTGGCCCATATTAGCACAATGGCCGACTCCCGCAGATGATAGGTCTGGGGATGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGTATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCAAATTGAAACCGGGGACGGGGTAGTGGACGATATTACCGCCCTT # Right flank : TTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //