Array 1 10929-11143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFB01000005.1 Amycolatopsis taiwanensis DSM 45107 A3CUDRAFT_scaffold_3.4_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 10929 30 93.3 31 ......T......................T CGGGGGCCTGCTTCGCCTTGACCAGCTCTGC 10990 30 100.0 31 .............................. AGTGCGCCGGTCCGGCCGGGCCGAGCGGCGT 11051 30 96.7 31 .T............................ CGGCGCATGCTGTCGAGCAAGCACAGCGGTC 11112 30 93.3 0 .T.....................C...... | T,A [11129,11134] ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.8 31 GACTTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTCCCCAACGAATTGTTCGAGTTGCTCATGAAGCACGAGGAGGCGCAGAACCGGGAGCGCGAGCACGCCGGGACGGCGTGGCATAACGGAGGCTGGATCTTCACCCAACCAAACGGCAAGCCGTTGGACCCTCGTGCCGACTACGGCGAGTGGAGGTCACTCCTGGAGGAGGCCGGTGTACGCGAAGCACGGCTGCATGACGCGCGGCACACAGCCGCCACCGTGCTTCTAATCCTTGGCGTGCCGGACCGCACCGTCATGGACATCATGGGGTGGTCGACGGCTTCCATGAAGGCGCGGTACATGCACGTCACCGACGAGATCCGCCGAGACGTCGCCAGCCAGATCAACGGGTACTTCTGGAAAGAGAACTGAACCTCGACAAACCCTCTCGCACGCAAACGGCCCCCGCTGACCTAGGCGGCGGGCCGTTTTGCGTCGAGCTGCAAATACCGATGCTAAATCGGCTGATCGGGCTCTAAACTGACTGGTCAGCAAGT # Right flank : GAGCATGCTGGGAGGGCAACTGAGACCTAAATTGAGCACCTCGGTACGCGAGACAGCCCCCGCTGATCATGGCGGGGGCTGTTTGTGCTGGTCAGAGGATGTGGCCAGGGCCGGGGTCGAACCGGCGACCTTCCGCTTTTCAGGCGGACGCTCGTACCAACTGAGCTACCTGGCCGGAAACGCCGGCGATTGCCAGACGCTTTGCGACCCTGACGGGACTCGAACCCGCGACCTTCGCCGTGACAGGGCGACGCGCTAACCAACTGCGCCACAGGGCCTTGCTTGTACTGCGTACTCCCAACGGGATTCGAACCCGCGTTGCCGCCTTGAAAGGGCGGAGTCCTAGGCCGCTGGACGATGGGAGCTCGGTCAGTTTTCGGCGAACCGACCGACCGCACTCTCAGGTCCCCCCGGGAGCGACTACAAGCATAGGGCACGCCCCCAAGGCGCTCCAAACGGGTATCCCTTTACTTCAATCAAGCCGGTGACCTGCGGTAACG # Questionable array : NO Score: 3.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2101-1912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFB01000058.1 Amycolatopsis taiwanensis DSM 45107 A3CUDRAFT_scaffold_52.53_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2100 36 97.2 41 .........................A.......... GTGGCAATCGTGCGGGCGAGATGCACCGCACCGGCCGCCGC 2023 36 100.0 40 .................................... CGGACAGCACCGGCTGCGGTTGGTAGCCCATCTGCGCCAG 1947 36 97.2 0 .....T.............................. | ========== ====== ====== ====== ==================================== ========================================= ================== 3 36 98.1 41 GCCTCGATGAAGGGCCGTTCCGTCGGGAACGGCGAC # Left flank : TGCGACTGCTTCGAATCGATCAACACCACGTCCTGCGCCACGCCCCCGTCGTAACGGGTCTCATACGCATACGCCCCCCGTTGGTTCCCCGACCGTGTAGCGAACTTCGCCGGCGCCACCGACGCATGCGCACCAGCCGCAGGCTCCAACTCCGTCACCGACGTCAAACAATTCGCACCACCCACCGACACCGCCGCCAACAAATCCCCCAAACCCAGCGCCACCGACATCCAACCTCCCAGATTCGCTCATGCGCTCGTCCTGTCGAAGCGCAGGACGAGACCCGGTCATTCAAAGTCGCCCCCCGACGGACGATCGTTACTCATCGGACGCCGACCCCGCGCACGTGATCGCCACCCCAGCCCGCGACCAGCAAAGGAAGCGTCACAGATACCACGACCAGCCCCAGCTTCACGCCCAGCAGGCACGAAGGGCATGGGAATCATGAGCACTGGAAGCGGGCACACCCAGCTGAACGGCAATCCCAGCAGTTCGGCGCC # Right flank : TGGGTTGGCATTTTAGCTGGCATGAGCTGCGACGTTTCTGGAGCGCGCGAACTCTATTGGACCCAAGATCGTGATATGTGTCTCGACAGCGTTAGGGACCGCGGCTCATGGCCCAGACCAGCGGAGATGCCGCGCGAAGGCTGGCCGTGGTTTTCCGCCTCACCGAAGGGTTCGCATCAGAGGACCAGCGGGCCGTGCCCGGTGAACTTCCGCGTCGTGCCGATGAAATCGATGCGCTTACCCCCGTCGCCCGCCAGCGGCCCGAGGTCGCAGATCAGCAGTGAGTCCGTCACGAGATCGATCTGCTCGGTGACGGTGCGCTTGAGCCGGATCATCTTCGCTGGTTTGGTGTCGACACCTGTTACAAGTCCACGCGGACCCGTAGCGCGGTAAGCCGGTGGCGGAACCGGCCCCACTCGACGGCACCGTCCGCCTATACCTCCACCAGGAAGGGTTCGACCGGCAGGAAATCGAAATCCTCCGACTGACCGGGCAAGCCC # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGGGCCGTTCCGTCGGGAACGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 10075-9365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFB01000058.1 Amycolatopsis taiwanensis DSM 45107 A3CUDRAFT_scaffold_52.53_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 10074 36 94.4 40 A..C................................ GGTAGCCCTCACTCCACTCGACCTCGACGAGCCCATCGCC A [10069] 9997 36 97.2 36 .........................A.......... CGGACGTGCCGCCGGGCTGGCTATGGGCGCCTACCA 9925 36 100.0 40 .................................... TCGGTCAGTGGGCGCTGATGTCGAAGGCGTGGTCGGCGCT 9849 36 100.0 40 .................................... CGCGGTCCACCTCGACCCACGAGCCGTTGTTCTCGGCCCG 9773 36 100.0 38 .................................... CGCGCCATCACCGAATGCGGCCTGTGCGACGACACCGG 9699 36 91.7 38 .............A........GT............ CTGGGTCACGTGGCTGACCCGGAGGTCGGCCACGAGAC 9625 36 97.2 39 ...............T.................... TCCGGGGTCCCAGTGCGTGCCGTCCCCAGTGCCGTTCGT 9550 36 94.4 41 ..................CT................ GCGACGGTCAACCCGACCGGCGGCAGCACGCTGACCTACGG 9473 36 100.0 37 .................................... TGCTGTGCCGGTCGATGGTCACGTCGCCCACGACGTA 9400 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 10 36 97.5 39 GCCTCGATGAAGGGCCGTTCCGTCGGGAACGGCGAC # Left flank : GTCAATATCGAGGAATAGCAGGGGACATTGCCGGTCAGCCGTCATGCCGCGGTGTCCTCGTCGCGTTCGACCAGGACACCGCGCTCGAAGCGGGCACCTGCGCGCACGAGCGCGACCAGGTGCGGGGCGTTGACCGCGCGCCATCGGGCCTGGGCCGACTCGATAGCTCGAACTCGATGTTGATCGTCAGCACCTTGCGCGTGGGCATGCTGGATTCCTGTTCGTCGGTCTGGTCCCAGAGGTGAAGTAACTCCAGAGTCGACGTTTTCTGCGGTCGCGTTACAAGTCCTTATCGATCCTTCAATACGTGCTCAGCCATGACCACTGCACTTGGTTTTCGCCTACGACTTGCTGACGTTGTTCGACAGACCCATCCAACACGATTTCCAATTCCGTTCCTGTCCGTACATGCGCGTTCATGTTGCCGCCGACCTGCGGACACCGCGGTAGCTGCAACACCAGAGGCGATCTGTATGTGCTTGAACTGCAACCCAAACTGC # Right flank : TGGGTTGGGATTTTAGCTGGCATGAGCTGCGACGTTTCTGGAGCGCGCGAACTCTATTGGACCCAAGATCGTGATATGTGTCTCGACAGCGTTAGGGATCGCGGCTCATGGCCCAGACCAGTGGAGATGCCGCGCGAAGGCTGGCCGTGGTTTTCCGCCTCACCGAAGGGTTCGCATCAGAGGACCAGCGGGCCGTGCCCGGTGAACTTCCGCGTCGTGCCGATGAAATCGATGCGCTTACCCCCGTCGCCCGCCAGCGGCCCGAGGTCGCAGATCATGGTGGGTGTCGGTCGTTTCGCCCATCGCCTCGAGCCAGGCCCGCCGGGGGCAGAACGCGTGATGGGCGACCAGACTGATCGGGATCAGCTCGCGAGGGCTCACAGTGGGATTGCCTCGCCTCGTAGTGCCCGGCGTTCGGGGGCGTTGTCGCTGCCGAACCGCCCGATCGGGAAGCGCAGCACCCCGACGACGCCGCGTGTGCGTAGCCAGCTCGTCGCCGC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGGGCCGTTCCGTCGGGAACGGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 13940-14639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFB01000058.1 Amycolatopsis taiwanensis DSM 45107 A3CUDRAFT_scaffold_52.53_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 13940 30 96.7 31 .............................G TGGCGTCGCTGCCGATCTTGACGATGTCGTC 14001 30 93.3 31 ............................CG CGCTGCAAACACGCGTTACCCCCTTCCTGTG 14062 30 100.0 31 .............................. CGGTCGCCGTCTCGGGAGGCCTGCGCCGCTC 14123 30 93.3 31 .......................A....T. CGCGATCCTGCGCGCACCCCGCGACGAGCGC 14184 30 100.0 31 .............................. CGGTCGCCGTCTCGGGAGGCCTGCGCCGCTC 14245 30 93.3 31 ........................C...C. CAAGCGGGGTAACCCGCTCTGGTCGGTGGGC 14306 30 93.3 31 ....C........................G GTCCCGAGAAGGTGAGCCACGTTGCGCAGCA 14367 30 96.7 31 ............................C. CCGGTATTGCCTGGCCGCTCCCGATCGGCTG 14428 30 96.7 31 .............................G GGTCCGAAACATCTTGGCCGCAAAGAGCGCG 14489 30 86.7 31 ..T.....................A...CA GCAGCCCCTCACGCTGGAGCCACGCCACACA 14550 30 90.0 31 ..........................T.CC GCGCCGTGTAGTACCGCTCGGCTGTCTCGTC 14611 29 90.0 0 .................-........T..C | ========== ====== ====== ====== ============================== =============================== ================== 12 30 94.2 31 GTCGTCCCCGCGCACGCGGGGGTGGTCCGT # Left flank : CCTGCCGGAGGGGCAGCAATAGCGCCGTGATCTATGACATACCGCCAGGGCCGGGCCGACTGGACCGCTCAAAGCTCAACGGCCATCGCTGCAAGCCCCGACTGAGACGGAAACTGAGACGGGCCGGTACGCGAGACAGCCCCCGCTGATCATGGCGGGGGCTGTTTGTGCTGGTCAGGGATGTGGCCAGGGCCGGGGTCGAACCGGCGACCTTCCGCTTTTCAGGTCTCAGGAAGTCAGTTCGCGGCGGTTCTCGACGGCCAAACCCCCAGGTCAAGAGGTTCCGCGAACCCTGACGACAGTGGCCGACCGGAGATGAATGAGACCCAAACTGAACCCCTCGACAACGTCGCGGATGCACCTGAAGAAGGCAACTCTGCTGGTACATGACGACGATGTGAGCGTTGGCGAAGAGGTACTTCGCTCCCATGCGAGATGTCTGGCCGACTCAACTGAATGAAAATCCCCTGATCTTGCGATAAATTGCCTGGTCGCCAAGG # Right flank : CATGGGCTCGCTGTGCAGGCCAGGGCCTCCTAGAGACAGTCGTGCCTTACCAGTCGTAGGTCGCAATGCGCGCTTCAGAAATGAACTGTCACGGCGCGCCCGTCATGACGGTTTCGACAGACACATGACTATCGGCCAGAGGTTTAACCCGTTCGAGTGTTACTGACAGGTAGGTATCAAGTTACGCGGATCTTGTCGGTGGGTGCTGGTTTCATCTGCGTGCCGCAGAGGGGCTGCGGGTATCGATTTTGGTTCGAGCGGTGGGAGTACCTGTGGGGAGCAGGACGGCCAGTGGCGTCACCGGCCCAGACGGGGGCGAGTTGTCATCTCCCGATATACGGGCTGCGTGGGGGAAGGCGAAATCGGAAAACGTTCCACATCCATTGATGTGTCACATGCTGGATACGGCAGCGGTCGCCGAGTTGCTCTACGGGGTTTTGCTGGGGCCGCGGTGCAGGGAGGAATTGGAGGCAGGGCTGGGGCCGCTGGGGGACGCAACC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGGTCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 22638-23092 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFB01000058.1 Amycolatopsis taiwanensis DSM 45107 A3CUDRAFT_scaffold_52.53_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================== ================== 22638 30 93.3 31 .A..........................C. GGTCCTCGGTGATGGGGAGCTCGACCCAGTG 22699 30 93.3 31 .A...........................G AGACAGGCGACATCCGGATCGGGCAAGTCGT 22760 30 93.3 31 ............................CC AGGCTCCGACTTGCCATGGTCCGAGTGGCGT 22821 30 86.7 31 .........A.A................TG AACCGTGTTTTGGGCGTGCGCCACCCATGAT 22882 30 96.7 31 ...........A.................. CAGGTCGGAAATACCGAAAAGTCTCGGCATT 22943 30 100.0 90 .............................. CCGCCGACCGCTCCTCACCAGTGGACCGGATGTCGTCCGCTCGCATAGGGGGACTCCCCCGGCCGGCAGGTCGCCGTCCGGGTCCAACTC 23063 30 86.7 0 ..T................C...C....C. | ========== ====== ====== ====== ============================== ========================================================================================== ================== 7 30 92.9 41 GTCGTCCCCGCGCACGCGGGGGTGGTCCGT # Left flank : AGTGCGGGATCTCCAACCCGTCCTCGACGCGGTCCAGCCGGGCCGCAAACTCGCCTTCCGGCTTGTCGCGAACCCCACCCGCAGCATCCACACAGAAGGCACCCCGGGCCAACGCGGACGCGGTAAACGAGTCCCCCACCGAAACCCAGAGAAACAAATCGAATGGCTCGCTCGCCAAGGAGAACGCCACGGCTTCGTCATCCCGATCGCCGCCAACGGACAAGCCGATGTAGCACCGTCCTCCACACCAACCCTGCGCGGACACAAGAATGACAAGCAGAAGCAGCTCATCACCGTCGAACCGGTCCGCTACGACGGCCACCTCATAATCACCGACCCCGAGACCTTCACCAACGCACTCCTCAACGGCGTCGGACGAGCCAAGGCCTTCGGCTGCGGCCTCATCACACTCGCGCTTCCAGTCGCCTCACCGGCATGAGACGTGAACGAAACTGAATCAATTCCCGGCTGTTGCGACCTAAAACAGCAGGTCACCAAGT # Right flank : TCGCTCTCTTCGGCGCCGAGTTCCTCAGTCAGATTGTCCCTGCACTCCACACAACTTGACTTTCAGTCCGATCATCTCCACCCTCATTGAGGAAGTTCTAGAAATTTCTCGCATGGAGGCGTGATGCACGCTCGATTCCTCGGCAAGGACCCGGAGTCCAACGTCGGCGACTCGCCAACCCTGTTCGCGACGGACAGGACCGACCGGAAGACCTACATCGCTCAGGGGTGGGTGGTGACCGACCCGCAGACCCTGGCGGACGTTGGCCCCATCCCCGACGGGGAGGCGATCATCGAGATACCGGAAGATGTCATCAAGTTCTACGTACGCCGCTACCAGGAGGAAGACCGCTGACACAGCTCATCGAGCCCGGCCCAGCGTTCGGCGAACTCTTTCAGACGTTCGAGCACACCGCCTTTCGGCTTGAGGTGCGGGATCGCTACAACGCGCCGTACGAGGTCGAGTCCCTCAGGAAGTTCCTGGCGGGCGAGCCCGACGAG # Questionable array : NO Score: 2.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:-0.83, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCGCACGCGGGGGTGGTCCGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //