Array 1 99341-97392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRI010000009.1 Listeria booriae strain FSL L7-1541 NODE_9_length_135144_cov_42.820408, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 99340 30 100.0 38 .............................. TTTATAATCGAATATGGACGTTCGTACTCGTCACAGAT 99272 30 100.0 36 .............................. CGGTATTCATCCCGCAATCGCAAGTTAAGAAGGTGA 99206 30 100.0 35 .............................. ACGACAAGGTAAACAACCCATCACATTACAAAACA 99141 30 100.0 34 .............................. GTACTTGATACTTATTATTTTGGAGCTACGTATC 99077 30 100.0 37 .............................. CGTGCAGTTTGTCGCTGGAAACAAGCATAGATTAGGT 99010 30 100.0 38 .............................. GCCGTTCAGTTTGCAAAACAAAATAATTGAACGCAGTT 98942 30 100.0 36 .............................. GTTCACCTACACGACATCCTGTACAAATAGCAATGC 98876 30 100.0 36 .............................. TTTTTTATTTCGCCTCCTTGAATTTATTTAGATTAC 98810 30 100.0 37 .............................. CTCAATGATAAAACGCTAGGTGCGATAGGTCGAGGTA 98743 30 100.0 35 .............................. ACGCTTGCAACAACAGGATTAAGCGTTATTTTAGC 98678 30 100.0 37 .............................. ATAGCAACGAAATGCTTACACCGCAATGTGTTTCCAA 98611 30 100.0 37 .............................. TAATCCGCCAGCGTTAGGATTCTTATCCTTGCTAAAA 98544 30 100.0 37 .............................. AAGACTACACTAGCGAAAGTCGAGAAACCAAAACAAG 98477 30 100.0 35 .............................. ACTATTGAAAATGACGCCTATGCACATTTAGCAAT 98412 30 100.0 35 .............................. CCTCAACAGGTACTGCACATTCCCACAACTTTTCA 98347 30 100.0 37 .............................. TCTTAAAAGTCACGAAAAAACAACACGAAAAAGGTAA 98280 30 100.0 36 .............................. TCTATACAATGTATTTTAAACTACATTATCATTATA 98214 30 100.0 35 .............................. TATACATCTTTATCAGCCCAAGAAGGACTGCTGTA 98149 30 100.0 36 .............................. CTCCTCTTTTGTTACGCCTTCGCCCCATCGACGCAT 98083 30 100.0 35 .............................. TTGTCATGTCCATTTCAAGCGTTACTGTTTTATTT 98018 30 100.0 43 .............................. TTATTTCACCAATAGCTTATTGTGATGATAGTGAATATGTTTA 97945 30 100.0 34 .............................. GTAGCAGTTAAACCTGATTTACCTACATTATAAA 97881 30 100.0 37 .............................. ATCGTTAAAATCAAGATTAAAACCGTGTTCTGTGTCA 97814 30 100.0 36 .............................. TTAGTATATTCGGTAGACTGGTGTTCTATCGGAGCT 97748 30 100.0 37 .............................. TCTAATATCCATCGTATTAGACCCAGTCATACTATAC 97681 30 100.0 34 .............................. ACGAAAGTTTAAACCCACTAGCAACGCTCCTTAC 97617 30 100.0 36 .............................. TGGTAAAATCAAGCGTATCGTATCCACCTGAACCAC 97551 30 100.0 34 .............................. TTGATCAAATCAATAGGTGACTCACGGACCTTGT 97487 30 96.7 36 ....................G......... AAGGACAAAGGCCAAACGGTACACTTTACAAACCCA 97421 30 76.7 0 A......C.C.....C.A.....CA..... | ========== ====== ====== ====== ============================== =========================================== ================== 30 30 99.1 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGGTATGTATATTATCTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACACACGTGCAAAAATCGGTATTCGAAGGCGAAATAACCCCAGCACTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTGTATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTAGAGAGCGATAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATTTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTGCCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAAAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAACACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCATGTCACGTGTATCAATAAAGCTCGTCCGCGCATTGCCTGCAGGAATGAATAAATCATCATGTTTCTGAATATC # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 89805-91084 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRI010000013.1 Listeria booriae strain FSL L7-1541 NODE_13_length_92751_cov_57.253383, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 89805 30 100.0 34 .............................. ACATTTTTTACATCGCCCTCAACAACGTTACCCA 89869 30 100.0 35 .............................. GGGCAGTGGTCACCAGCGTATGCGGCTACGAAACA 89934 30 100.0 39 .............................. ACTTTCGTCCATCACATAATGTCTCTTCAAAATCGCGAA 90003 30 100.0 37 .............................. AGGAACTGAGCCTATACAGAGAAAAGAATCCAACTAT 90070 30 100.0 36 .............................. CTTTAATTTATCTATATAAAAAGCATAGCATAATGT 90136 30 100.0 36 .............................. ACTTTTTCATTTCATCGATGAATTTAAACCCTTTTG 90202 30 100.0 36 .............................. CTATGCATATGCGGAAGAATTCAAAAAAGTTGATTC 90268 30 100.0 36 .............................. TTGGCATTGAAGCAGGTAATGGTTCCGTTACTGTTC 90334 30 100.0 35 .............................. GAAATTGCGCAACGCCCTAAAAGAAACCAATCGTC 90399 30 100.0 37 .............................. GAAAAAATATTAGAACTGAGTAAGTAAAGCAGAAATC 90466 30 100.0 36 .............................. TTTGTTCTGTTGGGATCATAACCATCACGCATCCAC 90532 30 100.0 36 .............................. CTTGTACAGCTTCTTGCCGTGTTCTTCGGTTAGTTG 90598 30 100.0 34 .............................. TACTGCGTCCCTAGCGTACATTTCAACCAGCCGT 90662 30 100.0 36 .............................. TACCTAGTAAATACGGAAAACACTTGGTGGTTTATT 90728 30 100.0 36 .............................. TTGACCGTCATCTTCTACATCTGCTACAATGATTGC 90794 30 100.0 36 .............................. CTGATTCAAGCGAAAAGATAGATGATAAAGAAAATA 90860 30 100.0 35 .............................. TATCGTAGAATAGAAACTACTGTAAAACGCTAATT 90925 30 100.0 36 .............................. ACAACACGCCGACAAAGGCTACACGCACAGTAAAAC 90991 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATGAATGCCAT 91056 29 86.7 0 .................A..-...C..G.. | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 99.3 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : TGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTGGATGAGTTCTCTATGAGCGCATCAAGTATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTTGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGGAAAGAGGGATGGTGACAAGTGGTGTTTGGAAAAGCGAGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGCAAGGGATTGAGCCTATTTTTGGAGTTCGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGTGTTGATGGGGTACCT # Right flank : TTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTCACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCAAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGGTTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGCGCGGACTTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCGATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTTGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAAGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATCGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 732-574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRI010000037.1 Listeria booriae strain FSL L7-1541 NODE_37_length_19491_cov_48.875348, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ======================================== ================== 731 26 100.0 40 .......................... CGGTTCTTCGCGTTCTACAATGGGTGTTGAGATTTAGAGT 665 26 100.0 40 .......................... AAATACACTGCACGCGATCGCCAACTTTAAGATTTAGAGT 599 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ======================================== ================== 3 26 100.0 40 ACCTCAAAACAAAAGAGGACTAAAAC # Left flank : TGGTGTTAATACTGGGGAAAGTGCCTCTAACATAGAGACGTGGATGGAAAAACTAAAAGAAGATATGATGGAAGGTTCAATAATTATTGGCGATGATCTCATGCAAGGAATGATTGTAATGATTTGCGAGGGAGAATTTGAAGGTATCTATTATTGGGATGACTCATTTCAGTTTGAAGAATCAACCGATGAAGAAAATACTTATTGGATTGCAAAAGACTTCCTATCCTTTTTAGATATGATTAGATGAGTAAAGTGAACGATTGGCGATATTGATGTGGTGTCAATATTTTGGACAAAAATAAATAGAATTTAATTCGCTTTTCTTTCAAAATCGTTTGGTGTTAAGTATCTTAAAGATTGATGAATACGTTTCGTATTATAAAAGCCATAATTATAGCTAAATACAGTTACTTAGTACGTGTGATTACGCGAAGATGCAGAGTTACTAATAATTTGGTATAGTTAAACTGTTGAAAGTAAAATAGATATGTATTACA # Right flank : CTCTTCTGTGGATAAGTATTCGACAATAAAGCCATAAAAACTGTGATTCCAAGAATTGGATCAGTAGTTTTTATGGCTTTATTCAATTATTAGCAAAGTGGATAATTGCCAATGGATGTTGTTTTACGTAATACCTTCTTGTATAATGAATATATTGATAAATATTAGCAATATCATACACATGTGAAAGTTGAAACATCTAGCTATACAACTATAAAACTAAATGGAGCTGAGCAGACAAATGAAAATCACCAAAATGAGAGTTGATGGAAGAACTATCGTAATGGAGAGGACAAGTAAAGAAGGCCAGTTGGTTTATGAAGGTATTGATGAGAACAAGACAGAAGAAATTATATTTGATAAAAAGAAAGAGTCGTTTTATAAGAGTATTCTCAACAAAACAGTGAGGAAACTCAACGAAAAAGAAAAAAATAAACATAAAATAGCAATCAACAAAGAAATAACAGAATTAATGTCAGCGGTATTACACCAAGAAAAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTCAAAACAAAAGAGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.38%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 7472-9470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRI010000023.1 Listeria booriae strain FSL L7-1541 NODE_23_length_52342_cov_41.598393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 7472 30 100.0 35 .............................. TTAATTTTTTTAATCGTTTCGGCAAGTCCTTTTTC 7537 30 100.0 37 .............................. AAAATCAAGCGCTTGGTTGGCCTAACAGGAACTCCAG 7604 30 100.0 36 .............................. TTGAGCTAACAACTGGAAATCATGGCATCAACAACT 7670 30 100.0 36 .............................. GAATTTCACGTTGAAGATTCCCGTTGTCTCAATTAC 7736 30 100.0 36 .............................. TTTTGAACCAATGCTTCGGATATAGTTTTCTTTGCA 7802 30 100.0 37 .............................. GCGTTAGTTGTTGTGCCTGAAACTATAGGTGATTTTA 7869 30 100.0 36 .............................. AAAAAATCGTCTACCCACGTATTTGGAGGAATTACA 7935 30 100.0 36 .............................. GCATTAGGAGCCGCAGTAGTCCATGTTTCCTCAAAA 8001 30 100.0 36 .............................. AATCGACGACGGCAACAAAATCGAAAGAGAACCGTC 8067 30 100.0 34 .............................. ACGCTAACTTTAGCAGGAGCGGAATTTACATTGA 8131 30 100.0 36 .............................. ATTATTACGATTTCTGCCAATATGCTGTCCGTTTCG 8197 30 100.0 35 .............................. TCATTAAACAGAATGATTTTTTTCATCTCAGCGCT 8262 30 100.0 36 .............................. TTGAAAGCAAACTATGATGCTATATTTATTGACGTA 8328 30 100.0 36 .............................. AAAGTAAAATTAACATTAAACACCGAAGACGCCACG 8394 30 100.0 36 .............................. TGATTCAAGCGAAAAGATAGATGATAAAGAAAATAA 8460 30 100.0 36 .............................. TTTTCTATGTCAGCGGCTGCTTGAAGAAAATCACCC 8526 30 100.0 36 .............................. TAATTACTCGATGATTGACTAGGAATGACCGTAAAC 8592 30 100.0 36 .............................. AAATTTTGTAGCCCATGGCCGCTTCCAGTTGCGATA 8658 30 100.0 34 .............................. CTTGAGGGATGACATAAAAACAACTGGTATCACA 8722 30 100.0 36 .............................. TTCGGATATAAAAAAGGGGAAGACGGGGTTTTGGTC 8788 30 100.0 36 .............................. GTTGGCGCGAGGGGTACAGATCGAGGCACAAAGCAT 8854 30 100.0 36 .............................. AAAGCATGAGTGAAACCTTTTTCACCTTCAAAATTT 8920 30 100.0 35 .............................. ATTCTTCAATGATTTTTTTGTTTTTACTTACCTGA 8985 30 100.0 35 .............................. ATTCAGCCCTCTAAGCAAAATCCCTTCACGGTCAA 9050 30 100.0 36 .............................. TTTTGACCAGGATGCGGATTTGATTCATGCAAATAC 9116 30 100.0 36 .............................. ATGGCTGGTGGATTACTAATATTTCAGGTTACCCCG 9182 30 100.0 34 .............................. GCGATAGCAATATTTCTTGTTTTTTTCTTCATTT 9246 30 100.0 35 .............................. CTAGCAATTTCGGAAGCTGGAAAAATTTCATCGAA 9311 30 100.0 36 .............................. ACTTCTGCTATCGTTCCAAAAAAGCCATTCCCTGCG 9377 30 100.0 34 .............................. ATTTTTCAATAAATATAAAATCGATAGACTCAAA 9441 30 83.3 0 .................C.A....A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 31 30 99.5 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACGACCAAGTCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGCCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTTGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAGGGATTAGGATGGTTTTCGAGAAGTAGAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAAGAAGGAGAGACACCAAATGACTATGGAAAAATTAATACTACGAGTTACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCAGTGTCATAGCCGGAGATGGCGAGGAACAAGATGTTTATATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCGTTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATATACGCTCACCTTCTCACAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGCATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 12719-14652 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRI010000023.1 Listeria booriae strain FSL L7-1541 NODE_23_length_52342_cov_41.598393, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 12719 30 100.0 37 .............................. AAAAGATAATCAACTGATACATTAAAATAATTTGCAA 12786 30 100.0 37 .............................. CCGGATGCTCGTGTTGCCGTGGCGCATGGTCAAATGA 12853 30 100.0 35 .............................. TCAGCAATACCTTTGCCATCACAAATCACCTCTCG 12918 30 100.0 35 .............................. TATAAAGAACATAGAAGTGACAGAGGATAATATCA 12983 30 100.0 36 .............................. ATTGGTAAAGCGAAGGATATTATTAAAGGAATTTTA 13049 30 100.0 35 .............................. AAAAATAAAATATGCCAAAGAGCAAGCTTACTATT 13114 30 100.0 35 .............................. GGGATGACGTTCATTTTAAGAAGCGGACGCTCACC 13179 30 100.0 37 .............................. TATATATATTGATTCAGGGCTCTCGATATCATAAGTA 13246 30 100.0 37 .............................. ATTATCTATATCAGTTTGTGTAATACTAGGTGTATTG 13313 30 100.0 37 .............................. CCATCAAATTGGACATCTAGCTTACCTGTCATTTTGT 13380 30 100.0 36 .............................. CAACTATTCTTTGATTGATCACTAGTCTTACTTTTT 13446 30 100.0 34 .............................. TCTTTATACTTAACTTCAAAATCAGCGACATATT 13510 30 100.0 36 .............................. GCGTTTGCCATGTCGCGGCAGACGCGATTATATTCA 13576 30 100.0 34 .............................. AGAGCTAATTCCATCACGTCCGTAATACTATATG 13640 30 100.0 36 .............................. CATATTTATATGTGCCGTCTGGCATTCCGCACTGAT 13706 30 100.0 36 .............................. ATACAGGTAACGCTCCGATAATTGACTTGATAACAT 13772 30 100.0 34 .............................. ATGAGTTGCACCGGGTATTTGTAGAAAAGCTGGG 13836 30 100.0 35 .............................. TCGGTTGGTTTTGTTCCATTTAACCAAACTATGCC 13901 30 100.0 35 .............................. TTGCTTTTCCAAGTATTGAATTGATGTGTGCAGAA 13966 30 100.0 37 .............................. CTGCAATAGGTATTCAAATCGAAGCAGTAGGAACAAA 14033 30 100.0 36 .............................. ACAATCAATTGCAATTTCTCCATTTTAATTTCCTCC 14099 30 100.0 36 .............................. TTTACAAGATGCGCTTAAGGTAAAAGTAGAGTCCGA 14165 30 100.0 36 .............................. TTGCTTTCTTTCCTGCATCGCATAACATAAGCTTGC 14231 30 100.0 35 .............................. ACTACAGAAGGTGGAACAGATTCTATACAAGCTCG 14296 30 100.0 35 .............................. TTGCTTGCCGATAATAGGGAAAGTGTTCGGGTTTG 14361 30 100.0 35 .............................. TTGAACTATACTTTAAAGTAATACCATCGCTATCG 14426 30 100.0 34 .............................. CCCCATGAATCATAATAATATCGCCTTTTTTAGC 14490 30 100.0 37 .............................. TTAACCTGGTGCCTGTCATCACACTAGCACAGGCGAA 14557 30 100.0 36 .............................. GATTACGATGCATCAAATCATTTTATTGCCAGTATT 14623 30 93.3 0 .....................G..T..... | ========== ====== ====== ====== ============================== ===================================== ================== 30 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTGGATAAAGAACGTCTCGTTCAGAAAACAAAATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAACAATTCCTGCGAATAGCGCATTGATTGTACAAGACGGGAAGAAAAAGGTAATTTCTACAGATAATCTAGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGCATTGGTACTAAAGGGGTTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGGGCAATAATTTAGAATTTTGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : TGTCAGCGAGGCATATTTTTCAGAGTTGCAAAACAGGTTTTATCTAAAGTAGGAGTTAAAACATAATAAAACGAATTGAATAACAAGAGGGTTAGTATCCATTAATACTGAACAATGGATACTAACCCTCTTAATCTATTGGCCTCTTTGATGAAAATTTTTAGTATGCAATTATCTATTCAAACTAACTACTTTGGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTTGTGTTAAGGATGACCGTTTTCGCATAGTATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTTGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACTATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //