Array 1 1402757-1401529 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWRL01000001.1 Pseudomonas aeruginosa strain PAC98B IPC169_1.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1402756 28 100.0 32 ............................ AGTCCATCGGCAATCGTGGCAAGCGGCGTAGT 1402696 28 100.0 32 ............................ AAGCCCTCCCCCTGGAGCAGCCGAAGCGCGGG 1402636 28 100.0 32 ............................ GTGATGGTGCCCATGCGGCGCATGTGCATCAG 1402576 28 100.0 32 ............................ CGGTAGAGACGTCGGTGAGCGCTGCGATCTGC 1402516 28 100.0 32 ............................ GCAATCGATCAGGCTATGACCGCCGAAGCCTA 1402456 28 100.0 32 ............................ TCGACGTTGCCGACCCGCGGCCGCGCCCGGTT 1402396 28 100.0 32 ............................ TCGGCCAAGGCTCCGGCATCGAGCACGATGCC 1402336 28 100.0 32 ............................ TTGAGGAACAGGCGCGCTACGTCCGCCGCGAA 1402276 28 100.0 32 ............................ TTGATGATGCCGTCCTGCTGTTTGCCGGCGAT 1402216 28 100.0 32 ............................ TGTACCAACTGAGGTGCTACCTCAACCATGGC 1402156 28 100.0 32 ............................ AGGCCGATGGAGTAGCCGGACAGCACTGAGCC 1402096 28 100.0 32 ............................ TAGTGTGGAATTGATGTGCGCATCTTCTTAAA 1402036 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 1401976 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 1401916 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 1401856 28 100.0 32 ............................ TCCGGCACGCTGTGCTGAGCCTGAGCTACAGG 1401796 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 1401736 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 1401676 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 1401616 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 1401556 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 29372-30299 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWRL01000014.1 Pseudomonas aeruginosa strain PAC98B IPC169_14.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29372 28 100.0 32 ............................ AGCTTCAGCAGAAGAGGCAAATACTCCTCAGC 29432 28 100.0 32 ............................ TGCGAGCAGCTTGCCGCTTGCGGCCAACGCCT 29492 28 100.0 32 ............................ GCGAGCAGTTGCTGGAAGAACAGACCGGCATG 29552 28 100.0 32 ............................ ACCACTTCGCCACGAACGGCCAGATAGCGGGC 29612 28 100.0 32 ............................ GCATCCTTGAAGCTGGTTTTCTTCTCGACCGC 29672 28 100.0 32 ............................ ACTTGGAAGCTCCCATTCGCCGGCTTCAGAAC 29732 28 100.0 32 ............................ TGATGCCCGACATGGGTCGGTTCGCGGGAACC 29792 28 100.0 32 ............................ TCGTAGGCAGCCCGGTACGCTGCCCACACACT 29852 28 100.0 32 ............................ GCTGACCTGCCCTCATTGCCAGGGCACCGTGG 29912 28 100.0 32 ............................ CAAATGGGCGTGGTCGCACCCGTTGCCCACCA 29972 28 100.0 32 ............................ TGGCCGCTCGGCGTCGTCTCGTTCGCCACCTG 30032 28 100.0 32 ............................ GCGGAATCATCTCGCCGGCCGTCTTCGTGCTC 30092 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 30152 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 30212 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 30272 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTTGCCCTCGAACGGCATGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 39751-38823 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWRL01000014.1 Pseudomonas aeruginosa strain PAC98B IPC169_14.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 39750 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 39690 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 39630 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 39570 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 39510 28 100.0 32 ............................ TCAACAAACGCCACGGCGAACATGAACACGCT 39450 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 39390 28 100.0 32 ............................ TGGCGAAGGGCAGGGATGACAAGGGACAGCGT 39330 28 100.0 32 ............................ TTGTAGGGCGGCTGGGTATCGCTAACCATCAG 39270 28 100.0 32 ............................ ACCGCAATCCGTCAGTTCCAGTTCCGGGACAT 39210 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 39150 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 39090 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 39030 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 38970 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 38910 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 38850 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //