Array 1 212-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWM010000140.1 Erwinia amylovora strain CFBP 2313 Ea_CFBP2313_contig_142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 211 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 150 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 89 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : | # Right flank : C # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 631-302 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWM010000048.1 Erwinia amylovora strain CFBP 2313 Ea_CFBP2313_contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 630 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 570 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 510 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 450 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 390 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 329 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTAC # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1557-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWM010000003.1 Erwinia amylovora strain CFBP 2313 Ea_CFBP2313_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1556 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 1495 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 1434 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 1373 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 1312 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 1251 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 1190 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 1128 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 1067 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 1006 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 945 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 884 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 823 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 762 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 701 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 640 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 579 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 517 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 456 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 395 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 334 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 273 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 212 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 150 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 89 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.7 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : C # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14444-12464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEWM010000003.1 Erwinia amylovora strain CFBP 2313 Ea_CFBP2313_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14443 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 14382 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 14321 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 14260 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 14199 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 14138 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 14077 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 14016 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 13955 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 13894 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 13833 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 13772 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 13711 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 13650 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 13589 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 13528 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 13467 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 13406 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 13345 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 13284 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 13223 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 13162 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 13101 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 13040 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 12979 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 12918 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 12857 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 12796 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 12735 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 12674 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 12613 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 12552 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 12491 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //