Array 1 1299019-1305222 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFRX010000001.1 Bifidobacterium sp. W8105 NODE_1_length_1725924_cov_300.325796, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================== ================== 1299019 29 96.6 32 ............................T GCAAGGCACATGCCAAGCGTGGTCAACAAAGA 1299080 29 96.6 32 ............................T TTGAGGACGGTTCTGGCGTTCTTCCATGCGTC 1299141 29 100.0 32 ............................. CCTGTGCGTGAGTTATTTACCACTATGTGCCC 1299202 29 100.0 32 ............................. CACCTAATCCTTTCACCACCAACCATACCACA 1299263 29 96.6 32 ............................G GAAAGGACGTGACAAATGGAAAGCATGTGGAT 1299324 29 100.0 32 ............................. CGGATATGTCGGCGCTTGGCTGTCAGGCACCA 1299385 29 96.6 32 ............................G GCTGCTCGGACGGCGTGCCTGTCGTGGCAGAA 1299446 29 100.0 32 ............................. CAGGAGGCGGAAGACAGACACGCAATCACCCG 1299507 29 96.6 32 ............................T CCGCCAGTCGTCTTCTCCCCCTGATACAATCC 1299568 29 100.0 32 ............................. GCGAGCTACCACTATGATGCAGCAGCCATCAG 1299629 29 100.0 32 ............................. CCTCTTTCAAAAAGAGTCATTTCTATGAAACG 1299690 29 96.6 32 ............................G TACTCAACAAGCCAAAGCTCAAGGCCGAGGAG 1299751 29 96.6 32 ............................A CGGTTCATGGTCTCTCCGAAGGCTTACGTGAG 1299812 29 96.6 32 ............................G GAGGAGGCGCGCGACCAGGCTATGGAGACGGG 1299873 29 96.6 32 ............................G CTCATAGGGATCCACTTTGATGCCGACGGCCG 1299934 29 100.0 32 ............................. CATGTCAAAAGCCCGGGAGACCACGTTTTGAG 1299995 29 100.0 32 ............................. TCAACTCATGCCTTTCTCGGAATCTATAAAAT 1300056 29 96.6 32 ............................T CAGTTGAGCAAGAGGCTCAACCAGAAAAGCGA 1300117 29 100.0 32 ............................. AGCCCAGACAGCAGCAAGCGCCACGCCAGCAG 1300178 29 96.6 32 ............................T GTGCAGACGCTGATGAGGATTTTCCCCAATCT 1300239 29 96.6 32 ............................G TTTCGGAAACACCATATCGGGTTTAGGCAAGA 1300300 29 96.6 32 ............................G GGCGGCAGATTGTACCCGGTGGGCCAGTAACC 1300361 29 96.6 32 ............................T TCGTCCGGCGTAATACGGATGGGCACTGGAAA 1300422 29 100.0 32 ............................. CGGCTGATCCAAACCTTAGAGCGTGCGGCAGT 1300483 29 100.0 32 ............................. TGCTAACCCTGCCCCGAGGAGCGCAGGTGACC 1300544 29 96.6 32 ............................T AAGGGGACCGCTGCCGCTAACTACGACTATCT 1300605 29 96.6 32 ............................T GACTACATGAGCACCACAGACTTTGCTTTACA 1300666 29 96.6 32 ............C................ GGCTGGAACGGTAATATCGATCTGAGCGTGGT 1300727 29 100.0 32 ............................. ACATCCAGAATGGTCAATATACGTCTTGTTGT 1300788 29 100.0 32 ............................. TCGACCGTCGACGGCACCGCCTGAGACACCCA 1300849 29 100.0 32 ............................. GCAGATCGCCAGATGGGTCAAGCAGACAACCG 1300910 29 100.0 32 ............................. TCTCCCGTGGCACGGGGGATACGGTCGCGGTC 1300971 29 96.6 32 ............................A TGTTCGCATTCATGCCGGAATTCTGCAATCTC 1301032 29 96.6 32 ............................T GTCAAGATAATTCAAACCATAATCGTCATTCT 1301093 29 100.0 32 ............................. CCTGCGCAAAGCCAAGCTCCCCCAGGTGCGCA 1301154 29 96.6 32 ............................T CCCCGGTCGGCGGCTTGGTTTTTGCGCAGGCC 1301215 29 100.0 32 ............................. GTGTCTGCGGCTCGGGTGGTGCTGTTCGATGG 1301276 29 96.6 32 ..............T.............. AGACGCTCAAAGACTCACGCCACACCAACAGC 1301337 29 100.0 32 ............................. CTCTACGCTCAGGTCACCCGGTATCCCGGTGG 1301398 29 100.0 32 ............................. TTCTAACCCGTTGCCCCGGCCATCCGGTCGGG 1301459 29 96.6 32 ............................T CATGGGCTTGCTCTGCTCACGCCGGCCCAGCA 1301520 29 96.6 32 ............................G GACCAGGACGCTTACCCGGTCCTCGCGACCAT 1301581 29 96.6 32 ............................T GTCACGACCACTGGTGCTGACGTGGTGGTAGC 1301642 29 100.0 32 ............................. GTTTTGTCATCTCTCGCGGGTCGAGTACAGTG 1301703 29 96.6 32 ............................T TTTGCGCCGTCGTTTCCGGCTTCGGTCTGCGC 1301764 29 96.6 32 ............................T CGGCGGAAGGACGCGGATATCTCGGCTTGTTC 1301825 29 96.6 32 ............................G CCCACCAGGCCGTCGGGCGTGGAAAACAGGCC 1301886 29 82.8 33 ...........GGAT.............A CGGGCTCAACACCACCCACGCGCGGACCCGTGA 1301948 29 96.6 32 ............................T CAGACGGGGCCATCCTTTGTTTATCAGTATGC 1302009 29 96.6 32 ............................G GAAAAGTGGATGGACGATATCCTATTTGAATT 1302070 29 96.6 32 ............................G TGTTCCCCGACAATCTAAGATTCCTGAGCAAT 1302131 29 100.0 32 ............................. ATAGCCTTTAGGCGGGCCAGCCGTCTGGCCGA 1302192 29 93.1 32 .................A..........T CTCATCATCGCTCTTGTTCTGCCACTGGGCAA 1302253 29 100.0 32 ............................. GGATCAAACGAGATGGGCCTGAACACGTCCTC 1302314 29 100.0 32 ............................. CTCTGATACATCCTGACGCGCGTTGTCTGCTG 1302375 29 96.6 32 ............................T CCGTGGCGCAAAGACCGACAGACCGGCGATAC 1302436 29 100.0 32 ............................. GGCATGGAAGCCCTCCTGCCTGGCCGAGGGGA 1302497 29 96.6 32 ..............T.............. GTCTGTGAGAAACGATGGATGATCCGTCCCCA 1302558 29 100.0 32 ............................. CCATCCCGCAGAATGCCTACGATCATTATCAA 1302619 29 100.0 32 ............................. TGCACCATCTTCAACCCCATCCAGTCCTTGCA 1302680 29 100.0 32 ............................. ACGCTCATGGCCTCCGTGTTGGCGGACAGGGG 1302741 29 96.6 32 .....................C....... AGCCGCCGCCAGCAGGGCCAAAGCCTGCAGAT 1302802 29 100.0 32 ............................. GGGATGTACTCAAGCATTTTAAGGGACGAATT 1302863 29 96.6 32 ............................T GATCTTCAAGACGTTCTGAAGTCTGCAAGACG 1302924 29 100.0 32 ............................. ATCATCTTGGTGCCGAGGCCGGTCTGATCCAT 1302985 29 100.0 32 ............................. GGAACAACACGATGCACGCCTGGGCCAGCGCT 1303046 29 96.6 32 ............................G TCACTCTTGAGCAGATCGGACCGCTGTGCATC 1303107 29 96.6 32 ............................T GACCTCGCACCACTCGGTGTCACCAGTGTGCT 1303168 29 100.0 32 ............................. CACTATGGAAAGGATGAAGATGATGAATAGTG 1303229 29 96.6 32 ............................T CACCCTGACGAGGACAGCCTGCCGGAGCCTTA 1303290 29 100.0 32 ............................. TACTGGGTCCATTTGACCAAGTGGTACCCAAC 1303351 29 100.0 32 ............................. CCGGTGACGAGCTGGCATCGGTCATGAGAGTG 1303412 29 100.0 32 ............................. AATTGGCACGGGCCACATGTAGACCCGATATT 1303473 29 96.6 32 ............................T CAGTGGCCGACTGCCGGCTTTGCGGTCCATGG 1303534 29 96.6 32 ............................G TCATCCGGGACTTATCCGACATCAGGGTGGCC 1303595 29 96.6 32 ............................T GCCTCTCCCAATGGGCTTTTGCATATGCGTCG 1303656 29 96.6 32 ............................T CTGCCGGATGGTGGGTCCAGAAAGTCGTTGGT 1303717 29 100.0 32 ............................. CGTGTTGAGCTGCTTGTCGTCGCCCACCAGGA 1303778 29 100.0 33 ............................. GGGCCTCTTGGCAGGTCCTCGCAGATCGGGCAG 1303840 29 100.0 32 ............................. CGTTGCATGATTTCCTGCGTCGAGGAGCAATG 1303901 29 96.6 33 ............................T CCCAGTCACCGTTCTTCAGGGCGATGGTGTACA 1303963 29 96.6 32 ............................A TCGTCTCTGGGCATGTCTTCATACCACTGTTT 1304024 29 93.1 32 ...T........................A CGCACGGTCCGCCTTGTTCGAAGCAGCGTCGG 1304085 29 96.6 32 ............................G GCTCCAGGGCGATATCACCGGACTTGGTGCCA 1304146 29 100.0 32 ............................. GAGTACCTGCACGCCCTGCAGGACCTGGGCAT 1304207 29 100.0 32 ............................. GGGGTAGATCGCAAGTATGTAGACCGGCTGAA 1304268 29 96.6 32 ............................T GGACGGCTGCACTTTTCAGCTTTGCCTGCTCG 1304329 29 100.0 32 ............................. AACGAGACATTCGGCCCATACCCCATCACCAC 1304390 29 96.6 32 ............................T GGTGCGGACTGGCCCGGCATCCCATTCGTCTC 1304451 29 100.0 32 ............................. CCGACAATACGATCGTACGATGAACAGACTTT 1304512 29 100.0 32 ............................. CGGCAGATGGAGAAGCTGAAACTCGGGTCTTC 1304573 29 96.6 32 ..................A.......... TGGGCCAGCGCCCACTCCAGGGTCATGCCCGA 1304634 29 96.6 32 ............................T TGTCGGGCGATGAAACCAGTCGGGTGAAAGTC 1304695 29 93.1 32 .................T..........T ATGGGAGGCTTTCACCTCTTTTCTCAGCTCAT 1304756 29 100.0 31 ............................. TGCTCCTGTCCGCCGCCGGCCATCTGGTCCG T [1304781] 1304817 29 100.0 32 ............................. CTGTACAATGCCGAAATCGAAGTCATCGTATG 1304878 29 96.6 32 ............................T GACTCGAAGGCTGCCAAGGCCGGAGCCGACCA 1304939 29 96.6 32 ............................T TTTGCAATCTGTGATGGTTTGCGGGTCTCAGG 1305000 29 96.6 32 ............................T GAACCAGCTTTCGTTTGCCGCCACCCGATACA 1305061 29 96.6 32 ............................G CTCTGGGTGGAGGGGTCGAACGGCATGGCCTG 1305122 29 100.0 43 ............................. AAGCAGTGGACCGTGGCTTCTTAAGAGTATACAAATACTATCG 1305194 29 86.2 0 ...T....T.........A.......T.. | ========== ====== ====== ====== ============================= =========================================== ================== 102 29 97.8 32 GTGCTCCCCGCATCCGCGGGGATGATCCC # Left flank : TGGCCACGTCACCGCTAGGGTCCGGGACCGGCTTTGGGAACGTATCACAGGGCAGATCCGAACGGGAAAGGCCATCATGGTCTATTCTGCCCGCAATGAGCAGCATCTGAGTTTCAAGGTGCATCGCTCAGATTGGAACCCAGTCGACTGTGAAGGATTGACTCTTATGGAGAGGCCTGCTGAAGGCGGCGATGGCAGATCTGCGGGTGGTGGAAACCGATACCGCCGAACTGGTTGGAGCAATGCAAGCAAGTACAGACGAGTGGCAAAGTTCCGGCGCTCGCGATCCAACTGAGTCCAAGCGGGACTCACTTTTCAGATGAGTTTTGCCGATGAGTGCCAGGTACTGATTACTGGGCCAGTGCATTGATAAGGATCTCTGTGTAGATGGTCTGAATCGCAGTGGCTGGGACGGGGAATGGAAGGGGCTCGAAATGCAAACTCATTAAAAATCAGAGATTTAGTCTATTATATTGTTGGGATTGCAAGGATTTCTAAGT # Right flank : CACAGGCTATCGGATGGATGCCCTGCAGGTTCACAAATATGAGAGGAGACGAATGACTATGGATGAGGATTTCATGAGAAAAATGGCATCCAAGGATAAGGCCTGCACCACTACTCATGACCATATTCCTGATGACCGGATCAACAGTCACGCGTCATGCTATCCCATCACTGATGATATGGATGAAACCGAACGCCGGGTCTGGGATTTGCTGGATGACGAGGACAGGAAAATGATTCAGTCGGATCGTACATACTATGGGACAAACTATGGTGCTGGCTTCGGCGGCAATAGCAAGGTGAGTTTCTACGATGTGCTCGGCATCAGGCAGTTCGACTGATTCATCCCGGGCTTCCACATGTTGCTGCAATCATCAAAAGAATCACTATAGGAGCGCCGGGAAGAATCCATGACCGCTTCATAGTTCGAACATGAGTGTTTGATTCTCTTTAAGTCCCAGTAATCGCATTGGTGTGCCCTGATTGAAGGTTCTGTCTGCC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.60, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCATCCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //