Array 1 18165-19226 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFG010000031.1 Megasphaera hexanoica strain Oil-RF-744-FAT-WT-6-1 Contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 18165 36 100.0 40 .................................... TGAATACTTCTTTAGCATTCAAAGTGTCTTGGAACATCAT 18241 36 100.0 36 .................................... TTCGGATGTTACTGTCTTGTCAATGAAGGAAGACAG 18313 36 100.0 37 .................................... GCATTCCTCTTTCGTTGCATCTCTTAATCTCCTATAA 18386 36 100.0 39 .................................... GACACTGTCTTCAGTGCCTTTAATAACCAGGACGTGGTT 18461 36 100.0 38 .................................... TACTTACGCATGGCATCCGGATCAATATCCAGGAGCTG 18535 36 100.0 37 .................................... CCCGTTAAAGTTGCCGGCGAATTGTGCGAATTTATGG 18608 36 100.0 38 .................................... AGCCCTGTTCTGTACTGTATGTCCTACTTTTGCTAGTG 18682 36 100.0 37 .................................... TGCCATTCGACTTGATGAATACGATATCCGTTGCCAG 18755 36 100.0 37 .................................... TTTTCACGTTCGGCGTTACGTGCCTTTATACGGGCGA 18828 36 100.0 38 .................................... TGTTCGACTATTTCAGCAATTTAACGAGCGATACTAGT 18902 36 100.0 39 .................................... AGAAAGAATTCTGATATCATCCCGAGTGGATTTCACTGC 18977 36 100.0 36 .................................... CCGTATTTTTCTGATTGATAGAAGCAAGAATGTTAC 19049 36 100.0 35 .................................... GCGCGGTTTCCTAAAACAGCAGAAATTTTTTCAAG 19120 36 100.0 37 .................................... CGACATATATAATAATTTCGCACAAAAGATTAGTTAG 19193 34 94.4 0 ..................................-- | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 99.6 38 GCTGCATTACCAAATTCCCCGCAAGGGGACTGAAAC # Left flank : GCGATTCCGGCAATCGGAGTTGGAGGCTATTTGTGGGACAAAAGCATCAGAGAACAACATGAACAGCTGATAAAAATGGAAAAACAAGTAAATCAAGAATGTAGTGCATTATTTCACCTATATATGAAATATGATCACTTGAATATAAATCTAATTCAATGGCTTACGCAAAAGCAGAAAAAACAATTGGAATAGAGAAGGATATATTGCAGGTAAGATGCTTTAGCGGCATATTTCTTGACAAGGTATCATTATTAGGGATATACTAATAACGTAATGCAGTGGAAACGGGAAAACCTCATTTTACTCTGAAAAGGAGGGAGGTTTTCCAGGAAGGAAGAGAATCCCAGGTACCGCACAACCATCGCGATGACAGCACTGTTTATAACACTATGGAAATAGTTAGTTTTAACCTGGGTAGGAGAAAATCTCCAAAAACAAAGGAGGTTTTCCAAAATAACCCTATGAGGCCTGTAACCATGCGGGTACTAGAGGACAGT # Right flank : | # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGCATTACCAAATTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 466-83 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFG010000047.1 Megasphaera hexanoica strain Oil-RF-744-FAT-WT-6-1 Contig_47, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =================================================== ================== 465 23 100.0 49 ....................... AAATCAATGCTAGATATTATTTTTTCTTGCAGTTTTTGTACATTACCTT 393 23 100.0 46 ....................... TATCAACACGAGTCCATACACTGTAATTGGCTGCGTACATTACCTT 324 23 100.0 51 ....................... TTCAGAATACGGAAATTCTAACATGAATTTATTTATATCGTACATTACCTT 250 23 100.0 49 ....................... TCTGTCTCATATCTATCCCTCCTTAATTCCAGTTAGCGTACATTACCTT 178 23 100.0 50 ....................... ACTTCCTTTTTCTTGTCTCTTAAACTTGACTCAATCCCGTACATTACCTT 105 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= =================================================== ================== 6 23 100.0 49 AATCCCCGTAAGGGGACGGAAAC # Left flank : CAACTCTTCAGAGTCAGTGGTGCTGTTCTCGTTGAAGCAGGAAGCCCCCGCCTCTATAGACGGGGGTACGTTCACTATCAGAACTCTGGTACTGCTGACATGCCCACGAAGCTCATTATGGCGAGCTTTGTGGGTATTTTTTATGAAGCTGGAAAAATCAGCCTTGCACAAGAGTTTGCACGCAACTTAGTTGAACTCTCAACTAAGTTGCGTGCAGCAGGGGGAGTGGTGCTTGCGGGGATACTATATGAAGAAAAAGCGGCGTACCCTTTTGAAGCCGGATGTGGTATAATAAAAACGAATTTTCAGGAAAAATGGAAAATCCGCCCCGCTGTGACAACCATGCGGGATAGCGGAAATTCTGAAGATGAGTATCACTGAAAATGCTATAAAATCAAGAAAATCAGAATCCGCCCCGCAAACTGCCTCATAGACCTGCATAAATACAGGCTTCGTAAGGGGTGCTGTACATTACCT # Right flank : CTTACAAAATGCACTTGTCAACAAAAATTGGACACAAAACTAAAAAAATCAGGCATAAAAAACGAATCGATGTACAAGATTCA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 535-73 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFG010000049.1 Megasphaera hexanoica strain Oil-RF-744-FAT-WT-6-1 Contig_49, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 534 23 100.0 52 ....................... TGTGATAACATAGTTATCACGTTGAAAGGGGTACGGTGTAGTACATTACCTT 459 23 100.0 50 ....................... TTGTACAAGATATTCTGCTTGTTTTCTGGTAACCTGTAGTACATTACCTT 386 23 100.0 50 ....................... CCAGTTGTAGCTTCTCTCATTGCATCAGCAAATCTCTTGTACATTACCTT 313 23 100.0 51 ....................... CTCATTTTTCATCCTCCTATAAATTAAATGCTTTGAACAGTACATTACCTT 239 23 100.0 49 ....................... TTGACAACCTGGGTATCTGGTGAAACTGCATGGGAACGTACATTACCTT 167 23 100.0 49 ....................... TTGTGATGCAATAGTTTAACAGCACGTCATGCATGGCGTACATTACCTT 95 23 82.6 0 ...................TGCA | ========== ====== ====== ====== ======================= ==================================================== ================== 7 23 97.5 50 AATCCCCGTAAGGGGACGGAAAC # Left flank : TACTATCCGTACAGTATACACCGTATGTCCAAAAATTACCCCCTCCGTGTCCAATTTTAGTTTACCACTTCAAAAAGCGGTAACGCTACCGATAAGGCAGCATACAAAGTACATTACCT # Right flank : ACTTGTCAACAAAAATTGGACACAAAACTAAAAAAATCAGGCATAAAAAACGAATCGATGTACAAGATTCATC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.26, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5988-3078 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFG010000013.1 Megasphaera hexanoica strain Oil-RF-744-FAT-WT-6-1 Contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5987 28 100.0 32 ............................ TGAATCATCCCTTTCGTAATGACGTTATTATC 5927 28 100.0 32 ............................ TTCGGTTGTGGTGCCCTTCTTTTCATGCTCTT 5867 28 100.0 32 ............................ ACTTAGAATCAATTAAACTCTATACAGTGCTA 5807 28 100.0 32 ............................ AATGCCGGAAGTTTAGGACAGTTCGTCAGCTG 5747 28 100.0 32 ............................ TTTCCAGCCATTTTTGTAATGGCCATTACAAT 5687 28 100.0 32 ............................ AGTGACATCCAATGATTATCGGCGGTGCAGAA 5627 28 100.0 32 ............................ ATTTGGGCTGTTTTATCGTCTATCATGGAATC 5567 28 100.0 32 ............................ TCATGCCCAGCTCCTGCAACGTGATCCTGATA 5507 28 100.0 32 ............................ GACATTTTAGAGAAAGCCGGCATCGTAGAGGA 5447 28 100.0 32 ............................ TAACAATTATTATAATAGCTTGTGTCTATCTC 5387 28 100.0 33 ............................ TTGCATGAATCGTTCACCTTTTTCGATAATTTC 5326 28 100.0 32 ............................ TAGAACTGTGGCAGAAGGCGGCGACGGCTGCT 5266 28 100.0 32 ............................ TGGCATACAATACCGCCTGCTGCGTTTCGTCC 5206 28 100.0 32 ............................ AAGATGCACGACCCGGACAGCGCGTATGTATA 5146 28 100.0 32 ............................ GTGATTATGGGTTTAAGGTAGCTGATATACAC 5086 28 100.0 32 ............................ AGGTACTTTTCCGCCATGGCCAACATTTTGGC 5026 28 100.0 32 ............................ GCGAACGCCAGAAGTGTTGCTACTTCGTATAT 4966 28 100.0 32 ............................ ATGCAACAAAGGCTGATTCAGCTACCAATGCT 4906 28 100.0 32 ............................ TATAAACCGATAGCTATCCAATATGCATCCAT 4846 28 100.0 32 ............................ TCGTATTTTCAGCATTGTATCACCTCGCCACT 4786 28 100.0 32 ............................ GTGTTCTTACAGCTAGCACTTATTCACCTCTT 4726 28 100.0 32 ............................ TTATTGGTGTATGTTTAGCCGTAGCCTAGATA 4666 28 100.0 32 ............................ ACTTGAAGCCCATTTGGGCCGGAGCGACACGG 4606 28 100.0 32 ............................ TGGTGGAAAATATCGTACAGCATGTGGAATAT 4546 28 100.0 32 ............................ TGTAAAGTACCTTGTGTGAGTGGTCAATAACC 4486 28 100.0 32 ............................ ATTACAAAATGGCTGGAAAGGGTGGTAAATAT 4426 28 100.0 32 ............................ ATGATTAGACATAATATCAAGACAAACCTTTA 4366 28 100.0 32 ............................ CGGTTGTGACAGCCGCACTGTTATACGATAAA 4306 28 100.0 32 ............................ ACCTGGGAGCAGAAATAATTTCTGCTATGTTC 4246 28 100.0 32 ............................ ACGAACCGATGCAAATCCGACATGATAGGAGA 4186 28 100.0 32 ............................ GATAGGAGAATTCAGAGCACATCGCCGTGTTT 4126 28 96.4 32 ...........C................ TGATTGCAAAAGGGATACTCAATGTATTGATA 4066 28 96.4 32 ...........C................ TTACCGTCATAACGGGTAATCTGTTCATCACA 4006 28 96.4 33 ...........C................ TCTGGTTTATATTCAGGATGTTTGTCTTCCCAT 3945 28 96.4 32 ...........C................ GAACGCCACCCATTGCAAAAAAGGGAGCTATG 3885 28 96.4 32 ...........C................ TAGTACCGGCAAAACCGGGCACCCGGCACGAT 3825 28 96.4 32 ...........C................ TGCAGAGCGCAGAGATGCTCACACAGGCCACA 3765 28 100.0 32 ............................ GCTGTTTCATTGGTTGCAATCCGCGTACCGGT 3705 28 100.0 32 ............................ TGTTATTGTTATTCGCTGACTTCAAGCCATAT 3645 28 100.0 32 ............................ GGATGCGATGCCGTAGCAGGATACAGCCACTG 3585 28 100.0 32 ............................ AATGATGTATCGAAAGATAACCCTTCACGGAT 3525 28 100.0 32 ............................ AGCACGACCGGGACCGGCTGATGGAAGCCCTG 3465 28 100.0 32 ............................ ACGAGAGGCGAAAACTCAAGAGAATGGTTGGG 3405 28 100.0 32 ............................ AGTCGTTCAGTACGTCCCGGAATGCATCTCTA 3345 28 100.0 32 ............................ AACAACAGGATTCCATGTGATAGTTACTTCTG 3285 28 100.0 32 ............................ CAGTCCACGGGGATGATTTGATAGACATCAGT 3225 28 96.4 32 ...........C................ TATGATGTAGTAAAAAACACCTACAATTAACG 3165 28 100.0 32 ............................ ATATGGCGCGTGTGTCCGGGAATCCAGTAGTC 3105 28 96.4 0 ....................T....... | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : TCTGCAGCGTTTGAATCTGGCCGATGCACTGATGCGTTTTGCCCCAGATTACGTGAAGATTACGACAATCCGTCAGGTCCCTATCAGGAAATGTAAGGGATACGTGACATACAGCCGATATCAGCCGGAAGCTACGGTTATGCAGAAAGCTAGACGCTATGCAAAGCGACACGGTATTTCAATAGAAGAAGCGCAAAAACTTTTTCCCACGGCTGTCAGTAAGAATCGCTACCCGTATATCCAGCTGGAGAGCATGACCAATTACCATCGTTTCAGCCTGTTCATCCAGAAGCAGGAAGCTGTAGAGCAGCCATGCAACGGTTTTTCTGCCTATGGATTCAGCAAGAAATCGTCTGTTCCTGATTTCTGACCAAAGTTTTTACTATGTACCGAAAAGCCTTGTCAATCAAGGGTTTTGACAAGCGCATAAAATTTTGGTTAAATAAGAGTAGACTGATGCAAGCTTAGGTAGCATCAGGATATTCGCATAAAAGCCTACT # Right flank : GTAGACAGCTCCTTTACCAGTGACAGCGATTCGTTAGCCGTTCTTATCGCCTTTTGCGCTCGGAGATTTTGCCGTTGGTAGAAATTCCTTAGTGTAACATAGTTCTAAGTGAGATTTGCCAGAAAGAAGGCCCTGATAATAATGATAGGTCATTGCACCGATTTCATTATTATCAGGGTCTTCTATGAAAACTATTGTAGCAGAAATCACCAGAACGATAAAAAATTCAGGTATAGTGATAGTGTCAGGAAGGTGTAGGCATTTTTGGAGATGAGAAAAAGGATTTTGGTATAAAGCTGCATAATATGCTGATAGCCGCCGTTTTCTACTAAGCACATCCATCCGTCCGTCAAGGTGGATTCACGGTCTGGCATATGATTTGCTTTTTCAGGAATGTAGGTGCAGTCCTTTAATTTCCGAAAATTCCATTCTTTTTTTAAGATGTCCTGATTGATGTTCACGCGAGTTCGACACATGCAACCGGGAAAAAGTGACACGAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 15563-14633 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFG010000013.1 Megasphaera hexanoica strain Oil-RF-744-FAT-WT-6-1 Contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15562 28 100.0 32 ............................ ATGTTCAGAAGCTCCTGACACTGGATATTATG 15502 28 100.0 32 ............................ GACACAATGTACTATCAAATGCTCATATATGC 15442 28 100.0 33 ............................ TATATTGTCGGTGTATGTTTAGCCGTAGCCTAG 15381 28 100.0 32 ............................ TATGTCCTGCTCAACGACGCCGTTAGCACTGC 15321 28 100.0 32 ............................ AGCGACGCAGATTGTTGTCGTAATGACTATCC 15261 28 100.0 32 ............................ TAATGGCAATCCGGATCCTGGTGCATGCGGGA 15201 28 100.0 32 ............................ CATTTTTTCGCCCGCCGACGCAGAAGATACGT 15141 28 100.0 32 ............................ TGTATGGCCGAGTGAAACTGATTTAGATTTTA 15081 28 100.0 32 ............................ AGCCATAAATACCAGCTGTATACCAACGTGCT 15021 28 100.0 32 ............................ TTAACAGAAATTGTAATAGCCATTACAAAAAT 14961 28 100.0 32 ............................ TTTTTTCGTTTAGGCTCTCTCTGTTATCTATG 14901 28 100.0 32 ............................ TATGGACAAGCTGGCGCCAAAACTCATCCGCC 14841 28 100.0 32 ............................ ATATGGAATTAAGGAGGATAAAGTCATGAGAC 14781 28 100.0 33 ............................ AATGTCGTGGAACCCGAAACATTCAAGGGGCAG 14720 28 100.0 32 ............................ TGGTATATACTGCGTCGGGATTTTGCCGTCAG 14660 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : CATAAGAAGCAGTTGGAAATACACCGGATGCAGGTGTATGAAGGACGGGAAAAAGAAGGGAAACGGACCCGGCTGATTCATGCGTATCACATGGCTTCTACGGAATATGAAAAGACATGGGAACGAGCAGGGTGGTACATGCACCGGCAGTATGGATTAAGCCATACGATAGTAATCAGCAACGGGGATGGCGGAACGGGATATGGCTATGAGGCCTTTCAGGAACTGGCAGCAGGGTGCAAGTGGCATGAGCACCAGCGGGATGTATATCATGCACACCGCAAGGTGAAAGAACGGCTGCATTTTACCGCACCAAAGGTAAAGTGATGAAGCGAGTCCCTATATAGCTTCATAAAGGCGTGTATTAAAGGAAAGACTGAAAACTTCTTGCCACTAACCTTGTAAATCAAGGCTTTTGACAAGCGTATAAAATTTTGGTTAAATAAGAGTAACTTGATGCAAGCTTAGATAGAATCAGGATATTCGCACAAAAGAATACT # Right flank : GTTATCGATGGCAATTAATTTTGTGCTATTGCGAACCAAGTTTTGTATGGTAGGGGCGTGCCTGCTATGGTCATGTGGAAATACCCTAGGACGTGTTATCTGGGACAGTTCCTATGCACAAGAACACTGGCTGTGTGTGATTTTTATGGCACTTTTGAAATGTAATGAACGAATTATTATACGAAATGATGAAGGTGATGTCATGACAAAAGCAGAAATTGAAGCATCGAGTTTAAAAGTTATTCTGCATTCCAAAAGGGCCAATATCTATTACCTGGAAAAGTGCCGAGTCATGCAGAAAGATGGACGTGTACTTTATCTGACAGAAGGGAAGCGGGAAAATCAGTACTGGAATATACCGATTGCTAATACGACGGTGCTGCTGTTGGGAACAGGTACATCCATCACGCAGGCCGCTATGCGGATGTTAGCTATGGCGGGCGTCCTGGTCGGGTTTTGCGGCAATGGGGGAACGCCGTTGCTTTCCGGTGTGGAAATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 132-373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFG010000017.1 Megasphaera hexanoica strain Oil-RF-744-FAT-WT-6-1 Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ===================================================== ================== 132 23 100.0 49 ....................... AAAATCACACCGGCTAAATCAATTACTTTAAATTCAGGTACATTACCTT 204 23 100.0 48 ....................... GCGGATACATAGACAAGGCATTGTGATAGGAGGGTAGTACATTACCTT 275 23 95.7 53 ........C.............. GCCGCCCAGTAGATACCGTCATCACGGTCACGGCCGTAGTCGTACATTACCTT 351 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ===================================================== ================== 4 23 98.9 50 AATCCCCGTAAGGGGACGGAAAC # Left flank : TCGTACTATCCGTACAGTATACACCGTATGTCCAAAAATTACCCCCTCCGTGTCCAATTTTAGTTTACCACTTCAACGGAAACATGATGCATTTCTACATATTTTGCGATGATTATTTCGTACATTACCTTA # Right flank : CGGTAATAACCATGCTGGTTATACATCTTAGAAAGATAACTTTTGGCTACTTTTTTAGTTTTATGGGAAAATCAGGTCAGATGTTGATTGCTAAAACGGCGAGTAGATGAAGTGAAAGAGGTGATTGTATGAGTTTTGCTTATATTACGGAAAAAGGAGCCATCATCTCACATAAAAATAATCGGTTTATAGTAGGACGTAATCATGAAACGCTATTGGAAATTCCTCAGGAGACTTTGGAAGGGCTTGTGTTGATTGACACGGTACAGGTTACTTCTCAGGCGATGGTTAGTTTGTTGGAATGTGGCATTCCCGTTACCTGGTTATCCTCTAAAGGGTATTTTTTTGGCAGACTGGAATCCACCAGTCATGTTCGTGTGTTTAAACAGCAAAAGCAATTCTTGTTGCAAGAAAAGCCGTTTAGTTTTGAACTCAGTAAAAAGATAATTTCAGCAAAAATCCATAATCAGATTACATTACTGCGCCGATACAATCGGGAA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.29, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 9997-10592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAFG010000017.1 Megasphaera hexanoica strain Oil-RF-744-FAT-WT-6-1 Contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 9997 23 100.0 52 ....................... CTATCCCAAATGATGTACCATCATCCGACCATTTTGTGGAGTGCATTACCTT 10072 23 100.0 47 ....................... GTAGCAATTACCTGGTTGCGATCAAAGGAAACGGAGTGCATTACCTT 10142 23 100.0 48 ....................... GATTTGTTCACCATGCGGAACATGGCAGAAATTATTGTGCATTACCTT 10213 23 100.0 47 ....................... TTCGATTTTTACTGAACTATCTGTCAATTTTGCCAGTGCATTACCTT 10283 23 100.0 47 ....................... TTCTGTCTCCGTTCCTACTGCGTCATGGCCTTCTAGTGCATTACCTT 10353 23 100.0 51 ....................... AGCCCTGTACAAGAGTATGGTCGGAATTTACAATACCGTGTGCATTACCTT 10427 23 100.0 48 ....................... TGTTCAAGTGCGGGCTGTTCAGGTATCTGATAGACTGTACATTACCTT 10498 23 100.0 49 ....................... GATTGACATCGCTCTTTCCCTTTAATGCCCCGAACTCGTACATTACCTT 10570 23 82.6 0 ........T.........A.T.T | ========== ====== ====== ====== ======================= ==================================================== ================== 9 23 98.1 49 AATCCCCGCAAGGGGACGGAAAC # Left flank : ATGCGTATATAGATAAATTACGAATATTACGAAATAATACGGCTCATGAAATAGTCAATGTATCAGTGGATACAGTAAAAAAGCGGACTGGAATGAATCCATCGGATATTATGCAGTCTTTCTGGCAGCTGCTTTCTGTCATACTGGGTTTGCAAGTAAATAGACAACGCAGTGCTTACCGGCAACTTAACCAATGGATTGATCAATCCTTATTGTCAGCGGAAGAACAATAGTGACAGGGAGAAAGGAACGTAGGTCGTCCGGCGAAATGGCATCTACGTTCTTTTTTCTCTAAAAAATATATGGTATAATAAAAACGAATTTTCAGGAAAAATGGAAAATCCGCCCCGCTGTGACAACCATGCGGGATAGCTACGATTGTGAAGATGAGTATCACTGAAAATGCTATAAAATCAAGAAAATCAGAATCCGCCCCGCAAACCGCCTCGTAGACCTGCATAAATACAGGCTTCGTAAGGGGTGCTGGAGTGCATTACCTT # Right flank : TGTTATAATGAATAGAAACGGGGTCCATCTGGTATCATAGCGATTGTCAGAGCTTCGGATTACTTTAGTGACAGAGACTATAACTGGGAAACAGGGGAATTTGAAGATTTCCCTACGGTATGTGAATTAGGAAAAGAGGATTGGTAGAAGTGGGAAAAAACTTTCTTTAGCCGTTGAAGTAGCTGGAAAATATCATGCTGATATGACTGATAAGGCGGGGAAAACTTATATGTGCCATTTAATGTCTGTTTCTAACGCGGTATTGCCTCTGGGAGAAGACTATGCTGTAGTCGGCATGTTGCATGACACGTTAGAGGATACGGAGATGACGAAGGAAACTCTTTTTTCCTTATTCGGAAAAGAGATAGCTGATGCCGTTTCTCTTTTGACCCATGATGATGCGGTCCCGTATCTGGACTATGTGCGGGGAGTAAAAAAATCCGGGAACGCACTGGCCATTGCTGTAAAAAAAGCAGATTTAAGAAATAATATGGATTTAT # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //