Array 1 32775-35239 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXJS01000056.1 Methylacidiphilum fumariolicum strain Fur contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 32775 37 100.0 38 ..................................... TTCTTTTTCGGCTTTCAGTTGATGAAGCCTTCCTTTAA 32850 37 100.0 39 ..................................... CCCGTAAATCACCCCACCTTTTGTTAGCATATGAGCTCT 32926 37 100.0 37 ..................................... AATTTATCCCACTCATACTTCAGAGTAACTTCTTCTT 33000 37 100.0 40 ..................................... TGCCCATGATCTCATATGATATGTTATTGAAATAATACTT 33077 37 100.0 38 ..................................... CTTCTAATCTTGATTGCTGACCGTTTTCCCCGCTTAAG 33152 37 100.0 37 ..................................... AAGTTCAAAGTAAATCCCATCCAATTTTCGATAGATA 33226 37 100.0 37 ..................................... CAAGCCCTGAGGGTGAAGACTTTTTCCTGATAAAGTC 33300 37 100.0 40 ..................................... CTGCTATTTCACCTTCACCTTCTAACTTGAACCGCTTCTC 33377 37 100.0 39 ..................................... AAGAAACTCCAAGAGCCTTCTTCAAGGCCTCCTGGAGGC 33453 37 100.0 42 ..................................... CAACAGCTTTTTTGTAATCGCCTTGAAGAGAATTCTCCAAGG 33532 37 100.0 42 ..................................... CCTCATCCTCAATAGGGGAAAATTTGTCCATAATTTTATGAG 33611 37 100.0 39 ..................................... CCTCATCTAAAGCTCCCCATTCACGATACATAGCGTTAA 33687 37 100.0 37 ..................................... TCAAGTCCCAGTCTCTTTTCGTCATATATCCTCCCTT 33761 37 100.0 39 ..................................... ATTCCTTTTCAAGTTTGCCTTTATTCTTCTCACTCACTC 33837 37 100.0 40 ..................................... ATGTTGTTATGATAATATTTCATGGGGATTTTGTGTTCCC 33914 37 100.0 35 ..................................... TTTCTCATCTTCTGGCCACTTCCATAAGTTTTTCC 33986 37 100.0 37 ..................................... ACCTTCTCTTCCTTTAATAGTCGAATATAAGCCATTA 34060 37 100.0 38 ..................................... TTAAATGTTTGGTACAGCAGGAGAAACTTCCTGCTGTA 34135 37 100.0 40 ..................................... AACTCATTCCAGTTTTGGAACTCTGGCTTACCCTCTGGTA 34212 37 100.0 42 ..................................... TTTCCTTTGTTACAGGGTCAAAATTCGACCACTGGCGAAGAA 34291 37 100.0 41 ..................................... AAATAAATGCCAATACATATCCTCCCCTAAGGGAAGATATG 34369 37 100.0 39 ..................................... TCGATTAATTCTTTCAACAAAGACTCCCAATTGTGGTCT 34445 37 100.0 38 ..................................... AAAACCAAATATTTCGACCTGCTATATTCCGGATACTC 34520 37 100.0 38 ..................................... AGATAAACTTCTTGGCTCTAGGGGATTGAACCCTAAAG 34595 37 100.0 39 ..................................... ATACCAGCGAGCATTTCTGGCCCGATAAGCATGACTTCT 34671 37 100.0 39 ..................................... AGACCATACACTATCACTTCCTCGTCAGAGTAGTTGACT 34747 37 100.0 40 ..................................... TTCAGGAGTGAGGTAGTATCTCTTCATATCCTCATCCCAA 34824 37 100.0 39 ..................................... AATGTCTCGAATCATCTTAATTTCCCAGTCTGTTAACAT 34900 37 100.0 39 ..................................... ACCAAGAAGCTTCAGGCAAGGGGAATACATATAAAATGT 34976 37 100.0 37 ..................................... AAAACTCAACCCCAATAGACTTCTTCAATGCTTCCTG 35050 37 100.0 38 ..................................... TACAATAAAGATAAAGGAGGTAAAAATGAGGGAAGATT 35125 37 100.0 41 ..................................... CCAGGAACTGGGGGCTCGTCACAATATTTTGGTAACTCATA 35203 37 91.9 0 ..........................ATG........ | ========== ====== ====== ====== ===================================== ========================================== ================== 33 37 99.8 39 GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Left flank : GGAATAAGAGTCCAGTTTAGCGTTTTCGAATGTTATCTTGAAGAATCAGAACTAGAAGAATTGTGGCAAAAGCTGCTTGCGGAAATTGATCCTAAAGAAGACAGGATTGTCGCCTATAAAATAGATGCTAGACTAGCAAAGGAGATTAGAACTGCTGGAACAATGGTGTGTTCTGAAAAAGTAATCTGCTTTTTGGTATAAACTCTATTGCAAATTGGAAGAAATTTTTATATTTACCTAGCTTGTATCTTCTACTTGCATAAAGAATGACGGTAGTTTTTTTGTGTTTAAAAATGCAAAAATGGTTTTTTAGGTATTAACACCAAACCACTAAAAAATAGCCATGCCAATACCTAAAGTTATATTATTGAATATAAATGACTTATTAAACTTTCTGTGTTTTTGGGCTAATATAAAGCATAAACTGTACCAACATAAAATTGGAATCAATGCCTATGAGGTTTTTTATTTTTTGATAATCAAGATGTTAGAAGACCGCA # Right flank : CTTTCTCTGCGAACTGGCATTCCGCTTCCTGGCAAATTTGGGGATTATAGGCATGGACGACTCCTTTCCGGCCTCTTCTTGCTGGTTATCCTGCCTTAATCTCGATGCTGCGGATCTTGATTAGGAAGATTTCTGGCCCTACCCAGACATCCTCGACCAGCATATTGCTCGCATGTCTCCGGTTTCGCTTTGTAATCCAGCCGTGATAGACGGGATCTGGCCCCAATGTCGAACGCTCGAGTACAGCCAGAGGTAGCTTTCGAGCTTTTGAGATCCCCGGAAGCTCCCGCTCTCCCAATGGGTGTGAGAAGGGAGAAGACGAGGACCATCATCCGTCAACAAGACATGCAGCTACAACCAGGTTCTCTCCTTATGACGCATAGGTCGGCAGCAGGACAAGCGGGAATGAGGTGTGCTTGCTTGATCGATTGAATGGTGCTCTTCAATCGCGATCGCTGACGAACGATCTGTTTGCGGCTATTTCCCTGTCTGTGCAGGGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAATAATGGATGAAGCCGAAAGGCAATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 19766-20087 **** Predicted by CRISPRDetect 2.4 *** >NZ_LXJS01000057.1 Methylacidiphilum fumariolicum strain Fur contig_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 19766 35 100.0 37 ................................... CTCCTGTCATTGAATTTTATGGTTATCAGTTCTAATC 19838 35 100.0 37 ................................... CTTGCCATGACTGACTTCCATGCCAGGCCTAAAATCA 19910 35 100.0 36 ................................... GTTTTCTGCCATGCTGGAAGGAATACCACCTGGATG 19981 35 100.0 36 ................................... GATTGGCCAATGTGTGGCCAGGAAGGAGGAAAGATG 20052 35 91.4 0 ............................A..G..C | G [20083] ========== ====== ====== ====== =================================== ===================================== ================== 5 35 98.3 37 GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Left flank : GAACCGTTACGCCGGTTGTTTTTCCGGGGCATTGGCAGCGGCGAGGTCGAAATAGGGAAGGTCGTTTACACACAATGTTGGCGGCGATGTTATCTGAGGCAGGCATTGAGGAGAATAGCGTAGAGCAATGCCAGGTGCGGCGAGAGCCATTTTTCAAGGGTTGCGAGTTGGCCCAACAAGCCAAGGCTCCACAACATCTTCTCGCTTTACCGCGAATGCATTTGGAATTAGTTTTAAAAGAAGAGGTTCAGGGGCCTATGCTCCTTGGCTTGGGACGCTTTGCTGGACTAGGTTGTTTGGCTGGTGTTAATGTTCTTTGAGAACCGTTGGGTTTGCGAGCGCTTCGATGCTCATCGAGGGTAGCAGTCGTGCTCGAACATTGCGTGACAATGAGTTGTGAAAAATTATATGTGGTTATGGCAGAAGCGATATGTAGGTGGTGACACACGCTCGCAAATGTGCAAATTGTGTGTTGAGTATCAATTGGTTGCAAGGCGGCA # Right flank : CTCATGATGACTTGTGAGCCGGTTGGTAATAGCCGGCTCATTTGTTTTGTCAGCTTTTCAAAAGCTCACCCTAGAGAAATTTTTACAGGCCCACCATATTTGGAAAAAGGAAAAAAATAGAGCACTAAGCGCCAGGATGCTCTATAACTCGATTCTTTAACCTGCTAGCTATTGATGATGACACTCGCCAAGTCGTATAATTCGATTTTAACGAATCTTCCAGATATCATGAGTCTAGTCACACCACGTTCGCAACATCTTCTAGCTTTACCGTGAATGCATTTGGAATTAGTTTTAAAAGGAGATGTTCGGTGGCCCATACTTCTTCGCTTGGGACACTTTGTTGGACTAGGTTGTATGCCACCCTTGGTCCAGGATCGATTTGTTCATCCGGCTCTTCGCCTGCCCTTTCTTTCCTGGATTTTCTCTCTTCTACTTGGCTGACCGGGTTATGTTTTTGATCGGCAAATCCTCTATAAGCCCCACCGCGTGGGCTTTGC # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCCTCAGCTGAAGAGCTGAGGCTTCGTTTAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //