Array 1 410709-411193 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072049.1 Akkermansia muciniphila strain Akk0490 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 410709 31 100.0 35 ............................... CCGGTCCAGGTCATCCATATCTCCGGGGCCAGGTG 410775 31 100.0 33 ............................... TCCGGGCGTCAATTAGAGACACCCAAAAATTGT 410839 31 100.0 33 ............................... CAGGCATGAGCGGTCCACAATCACTCTCTGCCG 410903 31 100.0 33 ............................... GTTAAGACCACCCGCGCATTGTTGCCCTACGAC 410967 31 100.0 34 ............................... GAGGGATGCCTGGCGCTTCCTGGGGTCTGCCACG 411032 31 100.0 33 ............................... TTCTAGATAGGGGGAACTAAGAGTCAAAAATGA 411096 31 100.0 36 ............................... CGTCACGTATTCGGTACGTGCGTCAATGAGGGATTC 411163 31 90.3 0 ..............A...T........C... | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 98.8 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : ACGGGGCCGCCCTTGAGGGCGGCCCCGTTTCATGTTGGCGGAAAAGAAACTAACAAATGGGCGGGAATGAAAAATGGAGGCCGGAAAAAAAGCGGAACTCACCCTTGAAAACTCTGTGGACAAATGCCGGGACTGTCCTGGAAAAATGAACCGGGAATACGGATGAAAGACAAGCCGGGAATGACGGTGGTGTTCGAAGAAGCTTCTGGACGTTCCCCCAGGGAATGGCTAGCATGTCGGCATACCACCTGACTGTGCACAAAGCGGTCATGGCAGGAACATGAAACAATTCGTGCATGTCCTTTCTGCTGCGGCCCCCTTGCGCCAACCCCAAGCTCACAGAAAATCGCCGGGAAACTGGCGCACTCTGTAAGTCATTGAGGCTCGAAGATTGACAAACGAACCACTCATCATTACGACCTGCAAGGCGCAGGATGATTGAACAGGTTGGCGCAAAACGCCATTGGGACCTCTGACTTTCAATCCCTGCGCTTCAGGCC # Right flank : CGCGGGGACGCTGTTATATGTTGCATACTTGCAGTTTGTGATGGACAGGAAGGAGGGAAAAGAGTGATATGAGTACGGTATGCAAAAGGATTGGTTGAAAGATCTTTTGGAGTGGAGTCCCCTCTTTCTGGTACTTCTGGCAGGGGGAGCGCTGTGGCTGTATTCCAAGTGGCAGCTCAGGAAGGTGGACAGATCGTTGAAGGAGTTATGGGGGAGCATTATCCGGAAGGCTGAGTCGGGCGATGCGTATTCCCAGTTTCAGGCGGGACGCATGTACCAGAAGGGAAATGGCGTTTCCAGGGATGCCGTATTGGCGGATGAGTGGTTTCACAAGGCGCTTCCCGGATTGAATCGGGAGGCCAATGCCGGAGACAGGGACGCCGCCTTTTGCCTGTACGAGTGTTTCAGAGAAGGGTTGGCTGTGCAGAAAGATGACGCCAAGGCTCTGCTCTGGCTTCAGCGCGCCGCGGAACAGGAGGAGCCGGAGGCCATGTTTGCGC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 674218-674454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072049.1 Akkermansia muciniphila strain Akk0490 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 674218 33 100.0 34 ................................. CACTCTATTTTGGATGCGGGAAGTAGCTTGTGAG 674285 33 100.0 34 ................................. CATCCGTAGGAATCGCCGTCGGAGTAATGTCCGT 674352 33 100.0 34 ................................. CCACTGATTACCAGCACATGCGCCCGCCTATCAA 674419 32 87.9 0 .......................-.....T.CG | CG,C,C [674440,674443,674448] ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Left flank : TTTCTCTCCATGTATATTCTCATCACCTACGATGTTGTTACGGAAGACAAGGCCGGCCAGCGCCGCCTGAGGCGGGTTGCCCGTGCTTGTGAAAACATCGGGCAGAGAGTACAGAATTCCGTGTTTGAATGCGAGGTCTCTCCGGCCCAATTGGTTGACATCAGGAGCAAGTTGCTTAAAATTATTGATCAGGACAGCGACAGCCTCCGGATTTACCACATGGGGTCCAATTGGCATCACAAAATCGAACAATTAGGCAAGGAAAAGAGCTATGACATTTCCGGGCCGTTGATCATTTGAGTGCTGTTTGACATGGCCTTTGCGCCAACCCCAAGCTTACATCAAATTGCCGGGAGGTCGGCGATTCTTGTAAGACATTGGAAAACGCAGATTGACAACCAAGTATGATGAAGAGAAGACGGTATGTGATGTGCCGTCTTCGTGAAGTTGGCGCAAAGCCTCACTTGCATGATTGATTAACAACATGTACCGTTGAGGCA # Right flank : GATGATTAAAAAGCACCCCGGACCAGATAAGTCCGGGGTGCTTTTTTGTTTTCTGCCGCAGGAGTCAGAGAATGGGACGATCTTTCGGGTTGAGTTCGGCGGGCGGCAGGGAACGGAGCAGGGCCAGCAGGGGGTCCTGCACTGCGGTTCCTGTTTCACTCTGGCGTTTGAATTCCTCTTCTTCCTGCTGGAGGGCGGCTAGTTTGGTGTCTTCCACCAGGGCTTTGAATTTGTCCGCCTGGGAGTATTCTCCGTCTGTATCCCGGAAGACACGGGCAAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGATCGTTCATGAGTCCGGCTGTGTTTGTTTGTCCAGCAGGTTTCCGGCCAGTTGCCTGCCTTTCTCTGTAGAGCGGTAGACATAGGGACGGCAGTCCCCGAAGCGCTCCACGTAACCCTGCGCGATGAGGTCCTGCAAAATGTTTGTAACGGTGTTGGGGTGCAGCCGCGTCGTTTCCGTGATGGTGC # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1095370-1094558 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072049.1 Akkermansia muciniphila strain Akk0490 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1095369 31 100.0 34 ............................... TATTACGACAAATCCCAGGTCTATACACGACAGG 1095304 31 100.0 34 ............................... CCATACCGGAAATAGTACCGTCCATGTGACGGCG 1095239 31 100.0 34 ............................... TGCTCTGAAAAACGGTAAGGGCGCCAGACTGCCG 1095174 31 100.0 34 ............................... ATGACTGCGTGCCTGGACATCAACCCGTCTTGGG 1095109 31 100.0 34 ............................... GGTGCGCTCCTCTGTCTCACGCCCCACTCCTTAA 1095044 31 100.0 34 ............................... CCGGCGCACAGTTCGGCGCGATCCAGCGGGAGAC 1094979 31 100.0 34 ............................... TTGCACAGCGCAGAGATGCAGCGCTTGCTCCCCT 1094914 31 100.0 34 ............................... ATTGCCACGGTCATTGACCGCATCGGGACGGGCA 1094849 31 100.0 33 ............................... AAGGGAGGCAGCGGCGTGGCGCATGTGCTGCGC 1094785 31 100.0 36 ............................... GATTGAGGCGGCAGAAGGAATTCCCCCCGCCATCTG 1094718 31 100.0 34 ............................... TGTGATTATCAAACAAAAACCGTTGAAACCTACA 1094653 30 80.6 34 .....C....T...A....A.....-...G. CCGAATGACTTTTAGTCTTTCATCTTTAGTATTT 1094589 31 83.9 0 ........T...........AC...A...T. | T [1094567] ========== ====== ====== ====== =============================== ==================================== ================== 13 31 97.3 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCGCTTTTTTCTCCATTTCACAGGCTTTCCGCTCCAAGAACGGAAAGCCTTTTTTATGCCGGAATGTTGTCATGCACGGCGTCCCTCGTGCCGCACGGTCGGGAATTGTCCGGAAAACGAATGTGGAAGGTCCCATGAAATCATGGAAGGAGGCCTTTTCCCGACCTTCTTCCTGTTCCGTCTTCATCGCACACGCGGGAAAGTTTCTGGACGAAAGGCGCGGAACGGAATACTATGGCCTCTGCATCGCAGCAGGCGAGGGTTGTCGGGACGGCTGGAACGACTTCGTGGCGGAACCTTCCTCCGTCCTTCTCACTCACCGCGCCAACCCCCGGCTCACAGAAAAATCCCGGAACACCGGCGATTCCTGTAACGCTCAGGGTATCTTAGATTGACATCTCCCCATATACCATTTTAGGCGTGGAATACGCATCTCCGCGGACAGGTTGGCGCAAAATACCCTTTGCGTGCCTGACTCTCAATATGTATATATCCCCGCC # Right flank : CATCATGAACGCATGTTCCGATGTTTTCTTATGATGATTCCTTTTGGCTGAAAGGCTTTTCCATGACGTTCAGGCCATGAAAAAGCGCCGGTTCCCACAGGGAGGGGACCGGCGCTTGCGGTATAAGGGGGGAGGGGTTAATGGGCGCAGCCGGCGCAGGCCCAGCCTTCGCGGATTTTGGCGAAGAAGTCGTTGCCCTTGTCATCCACCAGGATGAAGGCAGGGAAGTCTTCCACTTCAATTTTCCAGATGGCTTCCATGCCCAGTTCCGGGTATTCCAGCAGTTCCACCTTTTTGATGTTGTTCTTGGCAAGAATGGCGGCGGGGCCGCCGATGGAACCCAGGTAGAAGCCGCCGTGCTTGTGGCAGGCGTCCGTCACCTGCTGGCTGCGGTTGCCCTTGGCGATCATGATCATGGAGCCGCCGTTCTCCTGGAACAGGTCCACGTAGGAATCCATGCGGCCCGCGGTGGTCGGCCCGAAGGAGCCGGAGGGATAGCC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1219725-1219170 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072049.1 Akkermansia muciniphila strain Akk0490 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1219724 31 100.0 35 ............................... CGGATTGTGCGGGTGCGCGATTGGGCCGCAGATGT 1219658 31 100.0 34 ............................... AACGTCCAGCCATATCTCGCCGGCCGTAAAGCCG 1219593 31 100.0 35 ............................... CGGGATGCGGTCCAGATACCTGCTCAGGTCAGCGT 1219527 31 100.0 36 ............................... AAATCCAAAAGAATCATATCAATCCCTTATCAATAA 1219460 31 100.0 35 ............................... TATGATCTCCTTAAGAGAGTTTTTGCCTGGCATCT 1219394 31 100.0 33 ............................... CCCTCACGGGTCCGCTCACGTGCAGGCAACTGT 1219330 31 100.0 34 ............................... TCCGGCCGACGCCTGTTGCCTCCGCTACGTCGTA 1219265 31 100.0 34 ............................... CGCGTTACATAGGAGGTCGTCTCGCGGGAAAATA 1219200 31 74.2 0 ...T...................TCAT.CGG | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 97.1 35 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : AGGTCCTTTATCTTACCTGACCTCTCCGCAATATCCTCGCACGCTTTAGCAGTGACGTCGTCCTCATCCCTCAATCGCATGGCATGCAATTTGTCTATGGCATCATTGAGCAGGTCCATGAGGTCCCGGCGTTGTTGATGATAATTGATTAGTCTCGATGTGATGTTGTCGTCCATGACCGACACATCGCTCTGATTAACCTCACAGTCCAGTCTATCCGGACATTTTTAATTTTTCGTCGGGTAATCCTTGGCGATTTCGATTTCTTGCAGCGTGGACCCATATCTGTGCAGGGCGTCTGCACACCATCTGCATAGATCTTTCCTGGGTGATTCGTTTTGATCAGATACTTGTCATTGACCCGTGTTTTGCCCTCCGTTTTGATCAGATACCTACTTGTGCTCGGCATCGCTTGCAACCTCTTTTGTTTTCAAGCTTCCAACGGATTTCAACCTTAATTCAACACTGATCAACTATCCTGTCGTCCCTCACTATCTGGA # Right flank : ATTGTTCATATTCCAGCATAGTGCTCCTTCATGTACACAGGAGAATGAATAAGCAACAGTTATGCTTCAATATTTCACGATGCTAGAAAGCCGCCAGATTTTTTCTGGCGGCTTTTTTGTGTCGGTTAAGACAGGTGGGACAGGCCCGGATGATTCAAGGCCGGTCAGTCTTCCATGTTATCCCCTTATGGATCATGATTTCCCGTCAGTCATTCCACAGGTATTCCTGATATTTTATCAGGCTTCCTGCCTCCGGCAGCTGTTTGTATGAGATAGTTTGCCCTGTGAAGACAAGGGGTTATCCCGTTATTGCTTCCATCTTTTGAGGTGCGGGAAGAATTGCTTCATGCCGGACCGGGCTTCTTCCACGGTATATTTCTTTTCCGAGTCCTTGTTGAATTCATCAAGGTATTCCAGGTTGTGCTCGATCATTTCATCCATGGTGCAGTCCCGGGTGAAACGGCCCTCTGCATAGCAGTAGTGGCAGTAATCCTCGTTGC # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1253749-1253200 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072049.1 Akkermansia muciniphila strain Akk0490 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1253748 31 100.0 35 ............................... TCCAACACTCCCAGGAAAGCACGAGCCTCACAGAG 1253682 31 100.0 33 ............................... CCGTCCGCCGCCGGATAGCTTGACGGAATGAAG 1253618 31 100.0 34 ............................... GGAAAGGACTGCCTGACCGAGCCGCTGCGGGTGA 1253553 31 100.0 33 ............................... TACGTATTGCCTGGGCATCGCCGCTTCCATGGG 1253489 31 100.0 33 ............................... ATCCGCCGGTGCAAGGGCGGTTACATGCCCCAG 1253425 31 100.0 35 ............................... AGGCAATCGTCGGGCATGATTCCCGTGATGTACAT 1253359 31 100.0 33 ............................... TTCCGCAATGCCGCCCTGCGCCGCAGGAGCGGG 1253295 31 100.0 34 ............................... ATCGGGGCGACCAACGAGCCCAAGCCCCTGAGCG 1253230 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 9 31 100.0 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GATGGCCTGCCTAGCGTCCGCCGTTTCGCTCTTCCTTGTCTGGCTGCTGAACCTCAACAGGTGGACGCGCAAGAGCATCATGTAAAAGATCCGGATATTTGTTTGCACGGACGCTGCGGAACGAGTGAAACTGTTCCGCAGCGTTTTTTGTTCGGAAAGGCTTTTTTCCGTGGGGGACAGCAAAGGCTGCGGTGTGGTTTGAGGAAAGTTGCTGGACGAATCGTCGTGGTCATTTTATTATAAATACGCATCACGTGCAGGCACCGGTTGTCCGGATGAGGCATCTCTTTTGAAGAGAAGAATCGGCATCCGTGGTTCCCGGCGCCAACCCCAAGCACACAGAAAATTCCCGGAAAGTCGGCGCTTTTTGTAACCTGTTGGGGATGTTAGATTGACAGTAATGATCATTTTTTAAGGCGTGGGTACTTGCAGATTGATATGGCAGGTTGGCGCAAATCATTATTTGTGCAATTAATGATCAATTTGTAAGCTCCCCCGCC # Right flank : AATGCTGGATGGAAAGGTCCGGTCTCTATTGTAACGCGCCATGACATCTGATCAATTGACGACAGGTATCTGATCAATTTAGCCGTCCCTGCCTACTCCGGGCAGGGGGTGTGCAGGGCTCCTGCATCGCCTCTGCAAGCGGCCATCAGGCCGCCCCAATCCACCGCCTCGTCATCCTCCCTGGTCACACCGTCCTGCAGCATGGCCGCCCTGGCGTCGGCCAGCAGGTGCATCACCCTGGCCCGCTCGCTGGCCGGCTGGTGATCCTGGCGAGGGCTGCCGGTGGTTACCATTGCAAACCTGGCCGCATAACTCTCGGCGCTCGCTGTCCGGCTGGGCCAGCACCAGGCCGTCCACTCGCTCCAGGGGCTGCGCTGCCTCCACGGCTCCTCGATGCGGCACACTGTTGCCGGCACCCTGGCCAGCACCTCACGGCCGATGGTCACATCCTCCGGCGCTAAATCATCCAGCAGCGTCCAATCCATCTCCCGGTAGAGCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.60,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 1551647-1552148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072049.1 Akkermansia muciniphila strain Akk0490 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 1551647 33 100.0 34 ................................. ATAATCCGGAGGACGTGGCGGCCCTCCTGGATGC 1551714 33 100.0 33 ................................. CCGGACACCTTGGCATCACCGTACACCTTGGCA 1551780 33 100.0 35 ................................. TGTCGGACATGAGCGAGAAGACCCGCGAGAAGTTC 1551848 33 100.0 34 ................................. GAGGACCCGGACGCTACCTGGAGAGCCGTGTTGC 1551915 33 100.0 34 ................................. GTGGAGATTGCGAAGAATGGAGGGGTGTTGCTGG 1551982 33 100.0 34 ................................. AGCAGGAAGGAGAAGCGTTTGTTTGACGCCTGGG 1552049 33 100.0 34 ................................. TGAGGCTGACGGGTACAGGGCTGCCGACACGACG 1552116 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Left flank : GCTGCCCACAAAATCCCGGGTCAAGACCCTCCAGTACCGTTCCGGCATCACGGCCTACTACATCCTGACCATCCATCCGGACTCCATGACGCTGGACACCTACGCCGCCCCCAACAACGGCACCACGGACAAGGGCCCGCAAAGCGACGAATTCAAGAAACTCCCTTCCTACCAGATCCCGATGGATTAAAGGAAAGAACATTCCTTCCCTGTTCACCGGAAAGGAAACTGGACGCGCTTGAGCTTTCCGGATAAACTCCCTTCCACCTTGGAATGCCAGGGCAGAAAGAAGGAACATGCTCACCTCCCTTCTGCCGGACAGCGCCAACCTCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTGCTGCAAGTTATTGAGGACTGCATATTGACATCATGGAAACAATAAACGGCGGGTTGGAAATATCCCACTGATAAACAGGTTGGCGCAAAACATCCTCTGCCCACCTGAACATCAGCCGGATACCTCCCCTGCC # Right flank : CCATCCACGGAAAATGGTTTACCCAAAAGCTGTTGGTCGCACCTCACATGAGGTGCGACTAAACCGTTTGGGCAAGCGTTGGAATATCCATCAGAGCGGACAGCAGAAAGAAGAAAACCGCATTTCCCTGACGTGATTATGTTCGCGATAGTTTCTGCACAAAGATTCCGTCCAAGTATTCCGCCTTGCTGTCCAGTCCATTCAACCGTTTGTTTCCTCATGGCCGAATTCCGGCTGAAGGTTTTGTTCTTCCACGGCCTACCTGTTTCCCGCCAAAAAGCAATGCCGTTTCCATAAAGTCTTTTTTCCTGCCGGATGTAAATCCGCCTTTCCTTGCCTCTCCACCAGCCTCTCAATTTGACTTTTTCCACATCCGCGCTTCCCCCAACGGGATATTTTCCATTCAGCTTCCGTATTTCATTTTTTCTTTTCCTCCCAGTTTCAGGCCGTTTCCATCCGGGCGGCCCACGCATTTCCACGCTCCACAACCCGTACCCTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCACACGAGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCACACGAGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //