Array 1 96294-94679 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOYE01000003.1 Escherichia coli strain MOD1-ECOR45 ECOR45_3_length_352183_cov_225.023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96293 29 100.0 32 ............................. CCTCTGCCGCACTGGCTCCTGACAGCCTCAGC 96232 29 100.0 32 ............................. AATTTTGGCAGCGTGTAAAATCCACTTTTCAG 96171 29 100.0 32 ............................. ACGACGACGGCAGCGCAGCAAACTGGCACGGG 96110 29 100.0 32 ............................. TAACGGCGAGGGAGTGAGCGAGGTATTTATTA 96049 29 100.0 32 ............................. TTACAGCGCGTTGCGAAACGCTGCGGCGATGT 95988 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 95927 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 95866 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95805 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 95744 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 95683 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95622 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 95561 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95500 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95439 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95378 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95317 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 95256 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 95195 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 95134 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 95073 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 95012 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 94951 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 94890 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94829 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94768 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94707 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 122998-121993 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOYE01000003.1 Escherichia coli strain MOD1-ECOR45 ECOR45_3_length_352183_cov_225.023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 122997 29 100.0 32 ............................. CAATTCCCGCAGCGCCTGCCGCAGTATTCACC 122936 29 100.0 32 ............................. TTGAACGATTTTGACCTGCGCCGTTTTGAGTC 122875 29 100.0 32 ............................. CTGACGCAACGATTGACCGTGCCGCCGGGTTG 122814 29 100.0 32 ............................. CCGCCGTTATATGGAGCGATTCCGGTTTGGTA 122753 29 100.0 32 ............................. TATTCCCCCAGTCACCCCCGCCACCAAAATCA 122692 29 100.0 32 ............................. ATTTTTCAGACTCATCAAAATAATCCTTTAAT 122631 29 100.0 32 ............................. CATTGCCTTTGCAGCGTCTTTCCGATCATTCA 122570 29 100.0 32 ............................. AACGTGAGATACGCCTCCCAGCGGCGCTCGGT 122509 29 100.0 32 ............................. CCGTCAAACAGTATCACCGCGTTAACGCCCGC 122448 29 100.0 32 ............................. CCACACACGTCGAGCTGGTGGGGGTTAATGCT 122387 29 100.0 32 ............................. ACACCTCTACTGACGTTCCTGAACAAGAAGAT 122326 29 100.0 32 ............................. CTCTGTCGTTTTCATATTACCGGCCTGCCACT 122265 29 100.0 32 ............................. GCCAGGAATGCAGCATTTTGCATGGGAAATGA 122204 29 100.0 32 ............................. CCGATATTTTCCTGACGTCGAAAAAAGAGGAC 122143 29 100.0 32 ............................. CTGGGCGAGGGAGAAACGCCAGCGGAGCAGTA 122082 29 100.0 32 ............................. GGATCACAAGGGCGGCTATCAGGGTGGACGGA 122021 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //