Array 1 905323-906417 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP020464.1 Lacticaseibacillus rhamnosus strain Pen chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence                	Insertion/Deletion
==========	======	======	======	====================================	===============================	==================
    905323	    36	 100.0	    31	....................................	TTTAGAATACGATTATAAGACAGTAGTTTGG	
    905390	    36	 100.0	    30	....................................	AGTAAGGTAGCCAAATACAACCATAAGGGT 	
    905456	    36	 100.0	    30	....................................	AACTATCTAACACGCTATACACAGAATGGC 	
    905522	    36	 100.0	    30	....................................	TTTAATATGCAGGCGGCGACTGATTTATTT 	
    905588	    36	 100.0	    30	....................................	TTTAATATGCAGGCGGCGACTGATTTATTT 	
    905654	    36	 100.0	    30	....................................	TGATTTGCGAGATGTCGCGATAAGAAGTCA 	
    905720	    36	 100.0	    30	....................................	GACAACAGACTCCGTCAACATCAGTCTTAA 	
    905786	    36	 100.0	    30	....................................	ATAAACATCGTATGCGAATCGTAACAACGT 	
    905852	    36	 100.0	    30	....................................	AGTTGATTGAGGCGCGGATGTACATTCCTG 	
    905918	    36	 100.0	    30	....................................	CCGTTTTGGTTGCAAAACGAACCGATTACG 	
    905984	    36	 100.0	    30	....................................	AAGGTGTACTGCTTAGCTGACTCCCACGTG 	
    906050	    36	 100.0	    30	....................................	CTCGTGACTTGTCGTGATATGCATACGCGC 	
    906116	    36	 100.0	    30	....................................	GCGGCATCTTCAAAATCAAAACGACGCGCA 	
    906182	    36	 100.0	    30	....................................	AAGCAACATATCAATCAAGCCGAAAAAAAG 	
    906248	    36	 100.0	    30	....................................	TGATGACGAAGTGAGTTTGCCCACCGCTTG 	
    906314	    36	  97.2	    30	..................G.................	ACTCGGGTATTGACAAAGATCGACGCGGCA 	
    906380	    36	  86.1	     0	.......................AA.C....T...G	|                              	C,G [906406,906412]
==========	======	======	======	====================================	===============================	==================
        17	    36	  99.0	    30	GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC	                               	       

# Left flank :   GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG
# Right flank :  GACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCAT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:58.33%AT]
# 	Reference repeat match prediction:         F [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-2.50,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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