Array 1 33305-34273 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSB01000004.1 Malikia spinosa strain AB6 NODE_4_length_224659_cov_32.525978, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 33305 32 100.0 36 ................................ CTGGTAGTCGAGGGGCTGGACCGACTCTCGCGCGCT 33373 32 100.0 36 ................................ ACCAGCTGCGCGCAAACGACGGCGCTGGCGACTGGC 33441 32 100.0 35 ................................ ATGAGCGATGACCGGATCGAGGATCTGTACGTCAT 33508 32 100.0 34 ................................ GTGTTCACGGGGCCGCTGTTCGATCCTGGTCACG 33574 32 100.0 38 ................................ AACGCGACCACCAACGAGCGCGCCTTCCCCACGCCGCG 33644 32 100.0 36 ................................ CCTTGACCGCAAGGGCAATCAGCAGCAGCAGGAAAA 33712 32 100.0 33 ................................ TATACCAACAAGGTAACTCCATCTGGTGGGTCC 33777 32 96.9 33 ............G................... CGATGGAGCTCGCGATGAATTCGGATTGGGTCA 33842 32 100.0 33 ................................ ATCTTGCCGGCCGGGATGCGCCAGGTGTCGCCC 33907 32 100.0 34 ................................ ATTATTTCCGTCGACTGTGCATGTGGCGAAGCTG 33973 32 100.0 35 ................................ ATGTCATCAGTCCTTGAAATGGGCTCGGCGGCAGT 34040 32 100.0 35 ................................ GATCGCAGAGTAGAGCGGCAGACGGGCCACCAGGG 34107 32 100.0 35 ................................ ATGCCCTGTAAGCTATACGCCTCCATTTCGATGGG 34174 32 100.0 36 ................................ GGCACCATCGCCAACAACTACTGTAGTGGCTTGGGG 34242 32 87.5 0 ................A..T..A......C.. | ========== ====== ====== ====== ================================ ====================================== ================== 15 32 99.0 35 GTCGCGCCCATCACGGGCGCGTGGGTTGAAAC # Left flank : CCGAGTGGGGTCACGCCGCTCGGCGGCATGGCGCCGGTATGCCGACGGGGCGACCTGCAGCACATTGCAGATCGGCTCGATCCCCAGCGCCTCGCGGTGCTCGTCGATGAAGGCGTTCACAGCTTGAAGCGGCGGTCGAGCTCCGCCTGCGCGAAAAACGCGCTGGCGAGCTTGAGGATCTCGTTGGCCTTGCGCAGCTCCTTGACTTCGCGCTCGAGCGCCTTGATGCGCTGCTGCTCTGCACTGGTCGGACCCTCTCGCTGTCCGCTGTCGCGCTCGTGCTCGCGCACCCAGCGCCGCAGGGTTTCTGCCGTACAGCCGATCTTGGCGGAAATCGAGCAGATCGCTGCCCACTGCGATTCATGCTCGCCTTGATGCTCCGACACCATGCGCACGGCGCGCTCGCGGACCTCGGGGGAAAAATTCGCTGACTTCTTCATGGCTCCATCTTCTCAAAGGTGGGAGCCTCCTCGAAACCCGGGGCGGTTCAGTTCCCCGGG # Right flank : CGTAGCCGACCGCACCGAGGTTCCTCCGTGCACGTAAGAATATTTCCGAAAGCAAGCCTACCCTGAGGTTGGAGTCTATGGTGTGTATAAGGTTCATGGAAGGCCTTTGGTACTCACAGCCCGCAAGGCATGGTCACGCCGCGCTTGGCCAATGCCGCGGTGAAGAGGCGCCAGCCATCGGCGATTTCGGGCAGGGGATCGTCGCCGCGTCTGCCGCCGTCGAAGTAGCAGAACTTCTGGATAGCGGTTTGCCTGATCGCCCGCGGGTTCTTGATCTCGGGTGAGGTGCTGTCGAGCAGTTGGAGATCAATGCCTGCGTCAACCAGGTATGCCGGGATATAGAAGTCGGTGCCGTCCAATGCCAAGTGCAATGCCGAACCAGAGAACGGGTGGACATAGTTGATGTCGGCGCCGCGCTCAACCAGCAGCTTGATGACTGGCAGGTTGTGTCCCATGACAGCGTTCTGCAATAACGACATCTTTTGGTACCGTTCACTGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCATCACGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1689-309 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYSB01000071.1 Malikia spinosa strain AB6 NODE_71_length_2072_cov_28.878663, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================= ================== 1688 32 100.0 35 ................................ ATTATCAAACCTGATTGATCAAACGGACGTTTTGG 1621 32 100.0 35 ................................ ATCATCAGCTGCTGCTGCTGCCGGTGCTGGTACAT 1554 32 100.0 34 ................................ ACGCCCTCGATGCCCAGCTCGCTCTTGTGCGCTA 1488 32 100.0 36 ................................ TCGGACATTATGATATACGGACGGCATAGCGGACAA 1420 32 100.0 36 ................................ AGCCATGACGGCCCCTGGAACCTCGACTTCCGACTC 1352 32 100.0 34 ................................ TCAATGATCCGCCTCCGCCTTGTAATGGATCATC 1286 32 100.0 36 ................................ ATTTTTTTGTCCTGGCGGGTGCTGCTTTTGTTTATC 1218 32 100.0 35 ................................ GCCGCTGCCTGCATGGCAGCATCCCAGGCAAAAAC 1151 32 100.0 34 ................................ TGCGACTGGGTGAGCATCTACCAGACGCACGGCC 1085 32 100.0 35 ................................ TCTGGGCCGATGCCAAGGACGACGGCAACCCGCCC 1018 32 100.0 37 ................................ TCCTGCGGCGCTGCCAGTGCCGTTGCAACCAAGCTGG 949 32 100.0 36 ................................ ATCGAGCCTTATTTTGAAAACGTGGCGGACTACAGG 881 32 100.0 36 ................................ GGTAGGCGACAGGGCGAGATCGCGGTGCGCGCCAGC 813 32 100.0 41 ................................ TTCATCCAGCGTCCGGGCCCAGGAGCCATCGGCCCGGGTCG 740 32 100.0 35 ................................ CCGGTCTTCTCGACCACCACGCCATGCTCGGCCAG 673 32 100.0 35 ................................ GCGCTGAATGTCTTCGGGCGTCGGCTCTTCCTGGT 606 32 100.0 33 ................................ TTGGCGTTCGCCGACAGCTCGAGGACTGTGATC 541 32 100.0 34 ................................ TGGTCCAGCCGGATGGCCTGGATCGGCTCGCCCT 475 32 100.0 36 ................................ GCGCAGGTCTTGGTCGTGGTGTCAGAAGCTGAGGTC 407 32 100.0 35 ................................ TGTTCAGCGCGCCGATGGTGCGCGCGATCCTAGCT 340 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================= ================== 21 32 100.0 35 GTCGCGCCCATCACGGGCGCGTGGGTTGAAAC # Left flank : TGCACAGAGCACCGATACCCGGCCTGAAACAGCCCGAAAACAGAGCTCGAAGCTCAACAGATTTCATATGGTGCAAATTGCACAGTCACGCTGGCTTGGGCCGTGAGTTTTGAACACCTTCCCTAGGCAAGAACTGGCAGAACAAGGTGGAGCATGTTGGCGCAAAGGCTGTGCTCGATCTGCATGCGCCACTGATTCTTTGATGCTCTTGCGAACCCCCAGTGGTTGAAGCTGCTTGACGGAGTTCGCGGCTCTTTAACAATTTGATTTTTTTGGAGTTTTTTCGATCGATTGAGGCGATCTTGCTTGGCCTAGCGATTTTTTTGACTCCTTCGCAGAAAAGTATTTTTCTTGCGTTTGTAGTCAATGGTTTATAACTACGG # Right flank : CCCGACTGGCGAATGCCTCGGTGCGCATTCCACTGATGGCGGACAGTGATTCCAAACTCATCGCGGACAGTGTTCCAGGCGATGTCGGACACCCTGCGCCGGTGTCCTGAATGACAGGATGAATCGTAGCCGAAGTGTCCGCCATCAGCCTGTGATGGCGATTCGGCCCGGGCGCTTCAGGTCGGCTGGCGAAGCTTCCTCATGGACTCGCCCTTGAGGGCGATCTTGTGCGCACCGTGCACGATGCGATCCAGAATGGCGTCGGCCAGGGTGGGTTCGTCGAGCCAGGCGTGCCAAGCCGTTGCCGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCATCACGGGCGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCTCTTCACGGGCGCGTGGGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //