Array 1 12729-11294 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWH01000006.1 Salmonella enterica subsp. salamae serovar 13,22:z:- strain NB10 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12728 29 100.0 32 ............................. CCTGGGCTTCCAGACTGATATCAAGCCCTACA 12667 29 100.0 32 ............................. GTCGTCGGTTTGATAAGCTCGGCATAGTAATT 12606 29 100.0 32 ............................. ATCTTGGACTACGGAAAGGGCAAGGGGCACAC 12545 29 100.0 33 ............................. CAGCGTCGGCGGCTTCCTCTGCGAAAGCCTCGC 12483 29 100.0 32 ............................. ATTTACACCGGTGTACTGCTCGCGCAGCCCCT 12422 29 100.0 32 ............................. CCGCCATGTTCGGAAAGGATGTGATTGTCCGT 12361 29 100.0 32 ............................. CCGTCTTTTGTTAACTCATACATTTTGTAGGT 12300 29 100.0 32 ............................. GTTCGGTGATGACGATCAAGAGATCACGCCGC 12239 29 100.0 32 ............................. GGATGTTAAAAAACTATTTGATGATTGATGAG 12178 29 100.0 32 ............................. GGTAGGTTTTGCCCGATTCGCTAAATGTATGG 12117 29 100.0 32 ............................. GTCTCTATGTTCCAGACTGATAGCGTGGCGTT 12056 29 100.0 32 ............................. GCAACAATTATCACGACGGCGTTTGAGCAGTG 11995 29 100.0 32 ............................. CCGTGTTGTTAGCCAGCGATCGCAAATACCGC 11934 29 100.0 32 ............................. GGATCTGCGACATTCACGCAATTCGCGGGCCA 11873 29 100.0 32 ............................. GGTGAGAACAGGGTGCATGGGAGGGAACAATT 11812 29 100.0 32 ............................. CCAGAACGATGACGTTGAAGTACCGAAAAATA 11751 29 100.0 32 ............................. GCACGTTTATTGACCCTGAGCAGGAATTCACG 11690 29 100.0 32 ............................. TGCACCCCCTCAATAAAAATTCCGGTGCGCAT 11629 29 100.0 32 ............................. GATGGCAAGGCATGGAAGCAGCTCAAACGTTT 11568 29 100.0 32 ............................. AAAATTATTATTTTTGCAACTGCAATTCTGCT 11507 29 96.6 32 .............T............... GTTCGGTTCACATCAGGTCTGGGGGCTTACTA 11446 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 11385 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 11323 29 86.2 0 TAA.........T................ | A [11296] ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTGGTGGCGGCATTTTCCCGTGGGGTGAGGCGTAGTGTGCAGGCGCCGTTGCTAGGCCATGACGATTATCCCTGGCTGACTCAGGTCACACAAACAGAGCTGATTTCTCAGCGGGTTGATACACACAAAGAGGTTGAGCGCAGCGTAGATATTGGCTGGCTACATAGTGAAGAGGCGTGTCTTGAACGTATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCGGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTAATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGTAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22597-22264 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWH01000006.1 Salmonella enterica subsp. salamae serovar 13,22:z:- strain NB10 contig00006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22596 29 100.0 32 ............................. CGATTTGTATTGATTAATTTTGTCAAGATTGT 22535 29 100.0 32 ............................. AAATCGACTACGGCGGGCGCAAACAATACACG 22474 29 100.0 32 ............................. GCGCAGGCCGGTATTGATTGCGAATTGCCACA 22413 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 22352 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 22291 28 86.2 0 ...............A.AA......-... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACACACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTAGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGCATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGCCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 128594-130001 **** Predicted by CRISPRDetect 2.4 *** >NZ_SIWH01000010.1 Salmonella enterica subsp. salamae serovar 13,22:z:- strain NB10 contig00010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 128594 28 100.0 32 ............................ GTTCTGCCTGTTCTGTTGACTGAATGATCCTT 128654 28 100.0 32 ............................ ATGACATCGCGTGCAACATCTGATTTTGTTGC 128714 28 100.0 32 ............................ TGTTGTTGCTGTATCATCCGGTGTCGCTGTGT 128774 28 100.0 32 ............................ GTACACCGCAGCAGCAGATGATAGCGCAGAAA 128834 28 100.0 32 ............................ TTATCAGCGCCGGGAAAAGAAAAAACAGCCCT 128894 28 100.0 32 ............................ TCAGTCGTGGCCGCGCTTTCGACACGCTGCCG 128954 28 100.0 32 ............................ TTGAAAAGTTGCAGCAAAATAAATTGAATCGC 129014 28 100.0 32 ............................ TCAAAAACGATGCCGGGCGACGGTGGCGGGTC 129074 28 100.0 32 ............................ GCTGGTTCAGTCGTTGCAACACTGCCGAACTG 129134 28 100.0 32 ............................ GTGATGCCCCTCATCGTTGATGAACGTGTTTA 129194 28 100.0 32 ............................ GCGATGAGTGCGACATTAACAAGATTGTCGAG 129254 28 100.0 32 ............................ GCCTTCGGGCAGGTTCTCAGGCGAATAGGTCA 129314 28 100.0 32 ............................ GCAGATTAAAGCCCCTGCTGGCGGTTTTCAGG 129374 28 100.0 32 ............................ ATGCTGAAATTGTACATTGCCGCGCCATCTGT 129434 28 100.0 32 ............................ AGGAAGCGAAACACGGCCTTCCGTGCTGTCGT 129494 28 100.0 32 ............................ ACCCATTACACATGGCCATCCAGAGCTGAGTA 129554 28 100.0 32 ............................ ATCCCGGCTGAAGCGAAACTGAGAGTGAGGTA 129614 28 100.0 32 ............................ AATTGGCATTGAGGCCATCCCCGCGCGCGTAA 129674 28 100.0 32 ............................ AAACATCGAACGAACAGCGGACGGCAGGCTGT 129734 28 100.0 32 ............................ ATGTCACCTCCCCGATGGTGATAAGTTCATCC 129794 28 100.0 32 ............................ AGAATTGCGCGTCAATTAGCCCAGAAAAAAAC 129854 28 100.0 32 ............................ GGAGATGAACCAACAAGCGCCGCTATTAATGC 129914 28 100.0 32 ............................ GTACAAAAGGTCGCGTGGCTATACCCGGCATG 129974 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 24 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCCCTGGCAGAATTAGACGCCATGCGCTGGCGGGCAGGGCTACAGGATTACTGCCAGAGTAGCGCGATATTGCCCACACCACAGGTGCAGGGCTGGCGTACCGTCTCGCGTGTACAGGTGAAAAGTAATCCCGAACGCCTTATGCGTCGCTCAGTGCGTAAAGGCTGGCTGACCGAAGAAGAGGCGCAACAGCGGCTTTCTGGTTTACAGGAGCAACAGACTCCTCTGCCCTGGCTTCTGATTAGAAGCTTCTCCAGCGGTCAGCACTACCGGTTGTTTATCAAGCATGGTGTACTTCAGTTTACACCCGTCAGCGGTGTCTTCAGCAGTTACGGGTTAAGTGCCTGTGCCACTATTCCATGGTTCTGATCCCTTTTTAAATCCATCTGACTAACTTGTTGATTTATAACATGGATTGGCAAGACTTTAAAAAAAGGGGGGATAAGGCGTAGGCAGTATTTATTTTATTCTAAACAATGAGTTAATATTTTTTTGTTTCT # Right flank : ATGCAAGGTATTCTGAGCTCCGTCAAGACGGGGCACTATCATCGTTAACACTGCTGGTTTGGGCATAGCAATGTGAAATCATTTAACGAAGCCTGAGCCATTTAGATGTTTCCCAGACTTCGCGTCGCAATATTTTTTCTCTAGGCCAGTTATCCGGGTGAGCTGACATATTTTGTTCGCCTGATGGCATAAACTGTGTACTCTCCGTCACACTAATATAGGTCATTGTTGAATCTAAGTATCACGGCACTTAACATGACGTCCTTTACTGTTTCTCGCTGTTGGAGTCACTCGTGCTAGCTGCCACTGCCGGTTGCCTTCCTATACTGCCACTTTGCCGTGTGTATCCAGTTCGATGGAGTTATACTGATTTTAAGTTCAAGCAACAGCGCATTCTGGCGCATGATCCAGTAAACATGTTTAGCGTTGATTACTGATACGTTATTAAGCTTAGTTTGTGAACCTCAGGGGACAGGTATACGTGAGAAACTATTAGTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //