Array 1 2995322-2991430 **** Predicted by CRISPRDetect 2.4 *** >NC_019951.1 Mycobacterium canettii CIPT 140070010, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2995321 37 100.0 37 ..................................... TTTCTTGCGCCGGAACGGATTATGCCAGCCCCTGCGC 2995247 37 100.0 35 ..................................... AAAGTTCTCGCGTGATGAGGCCCAGCTACTCACCA 2995175 37 100.0 36 ..................................... GGCTAGACAGTAGCCGAAATTCGGCGGTTAGCTGCC 2995102 37 100.0 36 ..................................... GGTCCCATAGCCATTTGGTCGGACAGGCATGCAGCA 2995029 37 100.0 37 ..................................... GACGTCGCCGATGGTGATGTCGACCCAGTCCAGCCGG 2994955 37 100.0 37 ..................................... GTCAAGCGCACATTCGTGGACGGCGTTGTTCTGCCGG 2994881 37 100.0 36 ..................................... CCGTGTGCACGACCCAAGCTATAGTCGGGCATCAGG 2994808 37 100.0 34 ..................................... CTGGGCCGGCTGGTCCTTGGCGAAGCAGTGCGGG 2994737 37 100.0 35 ..................................... ATCAGTGCGCAAGCCGCCAGCCGACTGGTACGACA 2994665 37 100.0 34 ..................................... GACGGTGCTGTCGACACTGTGATGCCGAGCGCTG 2994594 37 100.0 36 ..................................... GTTGCGCCATGTCCAGTTGTCGTCGGTTTGTTGGCG 2994521 37 100.0 34 ..................................... CCCACACCCAAGACCATCGCCAACAAGCACGGCT 2994450 37 100.0 36 ..................................... AATCTTGTTGACGCCGGCGGCGCCGGGGGTGTCGGG 2994377 37 100.0 37 ..................................... GGGAATTAGAACGGGTGGCACGCACCGCGCGAGGGGA 2994303 37 100.0 34 ..................................... GGGCGAGGAGCAGCTCCAAAAAAAGCACGTGCAA 2994232 37 100.0 36 ..................................... TGCCAACATCTCTTCACCTACTGCTAGGCTTCTGCG 2994159 37 100.0 36 ..................................... TTGTCGGTCTCCTGTACGCGGGCGGTCGTTGAGGTG 2994086 37 100.0 35 ..................................... TGGCCGAATGTCAATCATGTGCAGCGCCAACGGGA 2994014 37 100.0 34 ..................................... GCTCGAATTTGAAGGACATAGATTTTGATGCCGT 2993943 37 100.0 35 ..................................... GGTCGTCTCGTCCATGAAACGCGCTAGCGCGATGG 2993871 37 100.0 37 ..................................... ATCCCGGGCCACTGGAAAACGCCAACTGGACCGACAG 2993797 37 100.0 36 ..................................... GCCTCGGCCGCCCATCTGAGCATGAATAGCGCTGGG 2993724 37 100.0 35 ..................................... GGTGACACCACACCAGATGTGGTTGAGTGCGAACT 2993652 37 100.0 37 ..................................... GCCGAATATGCCGTAAAAGGCGGCGAATACGTTGATG 2993578 37 100.0 35 ..................................... GATAAGTCGATGTCTATCAACTCCACGGGGACAAT 2993506 37 100.0 34 ..................................... TCAATACCGTCAGGCAGGAGGGCAATGTAATGAT 2993435 37 100.0 37 ..................................... GCTTTTCGAGTTTTGGCATGCTCGCCTCGTGCAGCGG 2993361 37 100.0 38 ..................................... TTTGCTGAATTCGCACTCTGCGCGTTCGTGATGACGGG 2993286 37 100.0 35 ..................................... CTCATTGGGGTCGCATTTGATGTGCAGCGCTGATG 2993214 37 100.0 36 ..................................... GTCCCTGCGGTGGTGGACCGCTCTCCCAGGGCTGCG 2993141 37 100.0 37 ..................................... AGACCGCCGCCATTCGCAGCCTGACTCAACATGGCGG 2993067 37 100.0 35 ..................................... GACTGCGCCTATCCACATACCGTCGGCGCGGCGGT 2992995 37 100.0 36 ..................................... ATCTCAGACACCCGGGCGCGCAAATGGCTGCTGGCA 2992922 37 100.0 38 ..................................... CTGCTGCGGGTGGATCTATCGCGGCAGCGGGCTTGGGG 2992847 37 100.0 36 ..................................... GTGCATACAAAACGGGATCGAATACCGCAATCAATG 2992774 37 100.0 36 ..................................... ACGCTGTTAGCGGCCACCGATTTAACGGGCGCGTTG 2992701 37 100.0 36 ..................................... ACCCCAACCGAGCACGGTACATATCAAGTCAACATG 2992628 37 100.0 36 ..................................... CGGGGAATATTACGCGGCTGCCCGTCCTGGTGCACG 2992555 37 100.0 33 ..................................... CGGACGCTCGGAAAAGGTAAGCGCCCTTTGGGT 2992485 37 100.0 36 ..................................... ATATGTGGGGTGATGGCACTCTCTACCGCCGCGCCG 2992412 37 100.0 36 ..................................... TTCACCTACTGCTCGGCTTTTGCGTAGAACTGGCGA 2992339 37 100.0 34 ..................................... GGTATCCCACCGTTCGTAGTGCCGACCGACGGCC 2992268 37 100.0 35 ..................................... ACATCGACGATGGCGCCCTGCGACCGGGACACACA 2992196 37 100.0 37 ..................................... TTTTTGTTGGGGCGGGCGCCTATCCCGCCCATCGGCC 2992122 37 100.0 35 ..................................... ATTGCGGCCGCATACCCATACAGTGACGTCGACGT 2992050 37 100.0 37 ..................................... CTTGACGAAAGCTTTTGGGGTGCAAGCACCGTCGCGG 2991976 37 94.6 35 .......G....T........................ CCAGGATGACGACGACCGGCTGGCGGCACAGACCG 2991904 37 97.3 36 ............T........................ CGCCTAAGCCCGAGATGGGCGGCCAAGGCGAAAGAC 2991831 37 97.3 35 ............T........................ CCCTGCGCAGACACCACCGCCTGCTCAACCTGCGC 2991759 37 97.3 37 ............T........................ GTTATCCTTAGGTGGGAAGAAGAGTCAGGGCCTCCTT 2991685 37 94.6 36 ....T.......T........................ CCCTCTACGTCTCGCAAAAGGTTCCCACCGTCGCGG 2991612 37 97.3 36 ............T........................ CCGACAGCTCCGTCTCGACCTCGATGGTCGTGGGAT 2991539 37 97.3 36 ............T........................ ATGTACTCGCGCACGATGAGCGCCTGGCGCCCGGGG 2991466 37 94.6 0 ............T........G............... | ========== ====== ====== ====== ===================================== ====================================== ================== 54 37 99.5 36 GCAGCGGCGGGCCTTGCCCGCCGCTGAGGATCGGAAC # Left flank : TGCAGGCGCTTGTCCTTGCCCGGTACCTTCGTGGGGATCTGACGCACTATTTCCCGTACAGGACGACAGGGCGCTGAGGATGGAAATTCTGGTGGTCTATGACATCAGCACGGTATCGTCGGATGGCGAGCGCCGTCTTCGGGAGGTCGCCAAAGTCTGCGAAGGGTATGGCCAGCGCGTTCAGAAGTCGGTCTTCGAGTGCCGCCTGGAGCAACGTGAGATTCGCCTGTTGATTCATGACATCGAAAAGGTCATCGACCGAGCCGCTGATCGGGTGGCGATCTACAGACTTCGTGAGCCCTATCAACGTCATGTGGTGGCGCTCGGGCGCGGTCCGGAGGTTGACTGGCGGAGTCCGATTGTCCTGTGACCGGGCGGAACCCACCTAGACATGAAATCTGCGGACGATCCGCCCGCAGACTGGGCGCTCTGAGCACATGAATGGTAATTGACAAGTTGATAGTTGGCGCGGCCAAGCGGGAAGATACTGGTCGTGAAGA # Right flank : CAAGTCGCGCTTGTCGGCTAGCGCGTTGATGTCGGGGCAGCGGCGGCCTTTGCCTGTCAAGGGACGGGCACCCATATGGCCGTCACTGGGCAGTCTGACGTGGCCGCCTACGTTCTGGCTTCGCATGGTGTTCTCGGCGCTGGTAGATGCCGACAGCCTCGACACTGGGGAGCACTTTCGCCGCGACCGGCGGGCGTTTCCACAACGGACAAATGGGGCGATGATGGCACGCCGGGCACGGCGGGTTAAGTACCTCGGGTAATCTGATGTATACATCAGATACCGAGTGGCGTATATTTTGCCATGTGAAGCGGCTGCAAATCTATATCGACGAGGACGTTGACCGGGCGCTCGCAGTTGAAGCGCGACGGCGGCGAAAGTCAAAGGCGGCGTTGATCCGGGAGTACGTCGCGGAACACTTTCGGCGGCCGGGCCCAGACCCGGTCGATGCTTTCGTCGGATCGTTCGACGCTGGAGCCGATTTGTCCGCGTCCGTTGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGGCGGGCCTTGCCCGCCGCTGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCGGCGGGCCTTGCCCGCCGCTGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-14.80,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3249480-3245847 **** Predicted by CRISPRDetect 2.4 *** >NC_019951.1 Mycobacterium canettii CIPT 140070010, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3249479 36 100.0 35 .................................... GGCTCGGAGGATGCTATGCCCGGACACGCCACCTC 3249408 36 100.0 35 .................................... GCGGAATCCGCCTACGGGAGCAGCGTCATCCTCCA 3249337 36 100.0 37 .................................... AAACCCAGCTCCGCGCCGTACAGGATAGCGGCAGTAG 3249264 36 100.0 35 .................................... GCTGCTCGGGCAGGGGCTGGCCACTGTCTTTTCGA 3249193 36 100.0 35 .................................... GATGATTTACGCCGTTACTGTCGATGATGCGGCGC 3249122 36 100.0 36 .................................... GGCGCGGGCACGGCACTTTGCGTTCACCGCCGCCTG 3249050 36 100.0 35 .................................... AAGGTGTTGGCCAGCGGACGCAACGCCGGAAGCAT 3248979 36 100.0 37 .................................... GTTGGCGTTGTTGGGTGGCTTCGCGGTCGGTGCTGAT 3248906 36 100.0 37 .................................... GGCGGGGGTTGGCGTGCAGGGCGTCGAGGATGGCTTG 3248833 36 100.0 35 .................................... GATCCGCTGGACACGATGGTTCTGCTGCCGCGGGG 3248762 36 100.0 36 .................................... GCTGCGACACCTGCGTTGCCGCGCTGCGCGCCGAAG 3248690 36 100.0 37 .................................... CCAGCCAAATCCCGTAATCCACACCGTGACTGAACCG 3248617 36 100.0 35 .................................... GGAGACCGTTCAGGCGTACGAAGTGACCCTCTACA 3248546 36 100.0 35 .................................... GTCGGTGATGAGCTGACCGTCGGACAGGTGGCCGG 3248475 36 100.0 37 .................................... GATCTGTTGCCTGAGCGGTGTGACATTTATGCCGCTG 3248402 36 100.0 36 .................................... CAGTATTTCCATGTCTAGCCTTTCGCGTGTGATCAA 3248330 36 100.0 36 .................................... GGTGACGCGATCGAGTTCATCACCGACGCGATCAAC 3248258 36 100.0 36 .................................... AAGCAGTCGCTGATTCAGGACCTCGAAGACATCCTG 3248186 36 100.0 35 .................................... GGACGTTGGCTGAGCAGGCGTCGGCCTCATCCCAG 3248115 36 100.0 34 .................................... ATGAGTAAGTTGTTTAGGGTTTCCTGGTATACGA 3248045 36 100.0 36 .................................... AAGATGTTGGCCAGCGGACGCAACGCCGGAAGCATG 3247973 36 100.0 35 .................................... CAGGCCACGGCGATCGGAGAATTCGTGGCGCAGGT 3247902 36 100.0 37 .................................... AGGTCGATCGCGTTCAGTTCGTCTGCCGGGTCGTGGT 3247829 36 100.0 36 .................................... GTTTGGGCGCACAGTGCTTCGTCACGCCAGTCCTCT 3247757 36 100.0 37 .................................... AAATTCCCCAAGGGTGGGTGAACAGCCAGGCATTCAA 3247684 36 100.0 34 .................................... TTCTTCTCGTGTTGCTCCTGGGTATGGCCAGGGT 3247614 36 100.0 36 .................................... AGTGCGTCGGTGACCGCCCCGAACAGGCCCGGTAAA 3247542 36 100.0 36 .................................... GCGGACGACGGTGAGCGACGCCGAGGATGGGTGGCG 3247470 36 100.0 35 .................................... CAGCCGGTCAATCGATATCCCGCCGAGCATCTGGC 3247399 36 100.0 35 .................................... GCGATCAGGCCATCACGGTACCAGGCGTCCTGCTG 3247328 36 100.0 35 .................................... ACGAAGATGCGCCGCGGTTTCCGCCAACGCAGCGG 3247257 36 100.0 38 .................................... GCCGCCGAACTGGGCGGGGCTCATATCACCATTTCCGC 3247183 36 100.0 36 .................................... GACGGTAGCGGAATTTCTTGTGTGAACGTCAGGACG 3247111 36 100.0 39 .................................... GGGGGGCGGTCACCGACGCACTCAACGACCTGATACCGC 3247036 36 100.0 36 .................................... CGCACCATGGTGGCGCTGCTGCAGGCCAACGGCTAC 3246964 36 100.0 37 .................................... CAGGGAAACCCGGCGCTGGCCGCCCAAATCGGCGCGG 3246891 36 100.0 35 .................................... GCCTCTTTTGTGCGCCACTGCTCAAACGGCACCTC 3246820 36 100.0 36 .................................... AGGCTCTTCAGGCCGCGATTCAGCACGGTGAGTGCA 3246748 36 100.0 36 .................................... GATCATGTCGGCGAGGTCACACAACGCGTGCGGGTC 3246676 36 100.0 38 .................................... TTGATCACGCGGACGGCCCCACCGTCCACGTGCACCAG 3246602 36 100.0 36 .................................... GCCAACCCGGCTGGTATCACCAACTTCGTTCGGGAC 3246530 36 100.0 36 .................................... GCGATCTCCCGGGCCGCCTGGGTTTCGTCGTCGCCC 3246458 36 100.0 35 .................................... ACCCACCGGTGCCGTCGCGATCGGCGACACACAAG 3246387 36 100.0 38 .................................... CGGTGCAGCTGCACCGGCAGGCAGGCGATCCGCCCCGG 3246313 36 100.0 35 .................................... AAATCCTCTTCACCCCACAATGCTACACATAACTG 3246242 36 100.0 36 .................................... TGCACGCATAGTGTCGCTATTGAGCGCGTCTTGCAG 3246170 36 100.0 36 .................................... ATGTAGTGGCGCTGCAGACGGGCCAGCAGCTCACGA 3246098 36 100.0 36 .................................... ACCTCGACAAAGGCTGGGCTGGATGCCAACACGCCC 3246026 36 97.2 36 ..C................................. AACGCGGTGGTCGCTCATCACAAAATGGCGGTGCGG 3245954 36 100.0 36 .................................... GATGTCGGCGCCGACCGCCCTACCGTGGGCCGACAG 3245882 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 51 36 99.9 36 ATTAATCCGGTCATTTTGGCCGGACACCATTGAGGG # Left flank : CTAGTCGGTGAGCTGCCTGAGTATGTGCCGATGGTGACGAGATGACGCGGCGCCGCTACTTGATGGCATACGACATCGCCGATCCGAAACGTCTGCGTCGTGTGTGCACCCTGATGGAGGACCATGGTGAGCGATTGCAATATTCGGTATTCCTGTGCGACCTCAGTGTTGCCGAGCTATCGGAACTTGAAGCCGCGGTCACCGCCGTGATGCACCTCGTCCACGACAGTGTCGTACGAATCGACCTTGGCCCAACGTTCTCACCCGCTGCAATACGACAGATCGGTCGTGGCCGCCGCATGCCTGCAGACGGACCGCAGATCGTATGAATCCGCGAGCAGTCATATGAGTGGTCAGATCAGGGGCAGCGCTCGCGACCAGGTCAGCGACGTCGCGGTGGATACCGCGTATGAGTGCCAAACGCAGCGTGGATGCTCGAATCATCACCGCTCGCGGCGGTGTGTATTTCGCCAGGTCAAAGGCCCACAATTCGAAGAGCC # Right flank : GTCAAGGCTGTCGTCGATGAGTCCCTCGATCTGCCGGACTCGGGCATACCCACACCCGCCCAACACACCATCGCCGCACGTCGGACATCCGATCCCACCCAACACCAACCGGGACTCGACGCGGACAGGATCAGCCTCTACCGTCACCACCAGTGCCTCCAAGCACTACAGCGCGGCACCCCGCAAGCCAGCCAAGACTTCAGCGGGGTGCCGCGCACCCATCAGTTCCTCGTCACACTGATGGCGCACACGAACCAAATCAACCCCGTCAGCACACTGACGGCCGCATCGGCAGCCTCAAAGAAGGATGGTCACCCGATGGTCGTCACCCCGAGAGACGGTCAACAGACGCCCTGCCGCACGCACAGCTCATTGTCGACAGGTTTCATCTGGTCAAACGGGCCAACCAGACCGTCGAAGCGGTGCGTCGGCGGACCACCTGGGACACTCGCGGACGCCGCGGTCGCAAGGCCGACCCCGAATGGCTCAACCGGCGCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAATCCGGTCATTTTGGCCGGACACCATTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //