Array 1 1160-2859 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHP01000003.1 Riemerella anatipestifer strain CCUG25002 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================================================================== ================== 1160 35 94.3 31 .................G........C........ CATCGCTGTATTTCAGGAAAAAGGAAAGCGA 1226 35 74.3 82 ...................TGCT.T.C.T..A.G. ACTCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACAAACATTTTTTGCATCCGTAGATGAGAAAG 1343 35 71.4 82 ...................TGTTAT.C.T..A.G. ACTCCGCTGAAAACACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGCAGTAGAGAATTAAACTCGCAAGAATTAG 1460 35 100.0 31 ................................... CAAACTAGTTAATAAATCCCCACACTACACT 1526 35 100.0 31 ................................... CTTAGTTAATTAAAATAGTTTTATTCTTTTC 1592 35 100.0 31 ................................... CCTCCTATACTTTGTGCAGCTATTGTTACAG 1658 35 100.0 31 ................................... CCTCCTATACTTTGTGCAGCTATTGTTACAG 1724 35 97.1 31 .................G................. CTTTCAACATCAATCTAAGGATAGGTATTTC 1790 35 97.1 31 .................G................. CCGCAAACAAACGATTGATAGAAGATTGCAA 1856 35 94.3 31 .................G........C........ CGTTACTTTGGAGAAATTAGAGCTAGAGGTG 1922 35 71.4 83 A...................GCTAT.C.T..A.G. ACTCCGCTGAAAGCAACAACGAAGCAGTGAGCTAAACTGAGAGCAGTCTCAACAATGGCTCACGACTCGGCGATGGCTTTACT 2040 34 68.6 83 ................-.....TT.CGCA.T.ATG AACTCCGCTGAAAATAACAACAAAGCTGTGAGTAAAATGAGAGCAGTCCCAACGCTACGGTTATCAGTATGTATCTGGAGCTA 2157 34 77.1 82 ...........T....-.....T.T.C.T..A.G. ACTCTGCTGAAAACAACAACAAAGCCGTGAGTAAACTGAGAGCAGTCCCAACAACTCCTTAAGATATTTAAAAGCGTGGCTA 2273 35 97.1 31 ..........................C........ CACGGTTGGGATGATACTGTCACCGCTGGAA 2339 35 97.1 31 ..........................C........ CGGTACAAAGATTATAAATCTTCATTGGTGG 2405 35 74.3 83 ...................TGCT.T.C.T..A.G. ACTCTGCTGAAAACTACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCCCAACAGTTTACACCAGCAAAAGGGACAAAAAGAT 2523 35 71.4 83 .........C.........GCTTA..C.T..A.G. ACTCCGTTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACTGACCACCAATATAGCTGTTCTAGCAAAAC T [2542] 2642 34 77.1 83 .....T..........-.....T.T.C.T..A.G. ACTCCACTGAAAACTACAACGAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACGCAATGAAGCCATATATTGATATTGCAGAT 2759 35 91.4 31 ....................A.....C.A...... CTAGATGAAAGTGGTAATCTTAACTTTGTTC 2825 35 68.6 0 ...................TGCT.T.C.T.AT.GT | ========== ====== ====== ====== =================================== =================================================================================== ================== 20 35 86.1 53 GTTGTGAATACCCTTCAAAATGAGAGTAGTCCCAA # Left flank : CATTAAAATAGATGGCGACAACCCTAAAAATGGTATCGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTATTGAAAGAACCCCGCACCGAAACACTAAGCACACCTATTACTATTGTGTAGTGTGTTTTTGGTACTTCTAAATAAAGACCGCCCTTCCTTAGTACTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGCTACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGTCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATCAATAGAAAGCAAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTTGCCCTCAGGT # Right flank : TTATGATAGGGTATTGTCTTTTTTGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACATCGCTTTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACATCTGATGCAGCTGCTTCATTCTGGTAGCCGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATGGCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGC # Questionable array : NO Score: 3.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.30, 5:0, 6:0.25, 7:-1.53, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGTAGTCCCAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.50,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [21-50] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //