Array 1 21663-21477 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKZ01000020.1 Meiothermus luteus strain KCTC 52599 contig_20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 21662 35 100.0 40 ................................... CCGTCTAAGCACTTTGCGTTGGGAATAGACGAATCTCCGT 21587 35 100.0 41 ................................... TGAATAATAACGGCGGTCCTAGTATTGTTTCTAGGAGAAGG 21511 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 100.0 41 GTCGCAAAACCAAAGCCCCGAAAGGGGATTGCAAC # Left flank : CGCCCTTGCGGGCACCACCCCCTCAAGATGGCGTGTCTACCAATTCCACCATCCCGGCAGGCAAGCATAAGGTTAGTCGGGCTTGGAGGGGTTGTCAAGACCGCTGCCGTTCCTTTTGGCCCACCGTTACCAGTGGGCGTTACGGGACTCTAAGGGCTCAAAAACCCCGTCGCAAACGGCCCCTCTTTTCCCGAGGAGCGGGCTTTTTGCTCGTGCGGAAGGTTGTGGAAGCGCTTTTGCAAAGTGAACCATTATGTTTTGCGCAAAATGCTATAATGGCCTCGTCAGGCCTTCCGACGGCGAACCTTGAAAGCTCGGATTTACCGTATAAAAGGCAAACCCACGCCACAAAAAATCCAAAAGTGTGGGTTTGTAAGCATTCATCGCACAAACGGCAATTTTTGCCCCAGTTATCCACAGCCCTCTTGTGGATAACCTGGTTTTCTCATAAATACCCTTTCAGAGAGTCCCTTGCAGGACGGCGATTAACGGGGTATGCT # Right flank : TTGGTGGCGGACTGTTCGCTGACAGAGCGTACAGGACAGGGTTGTTTTTTGGGGTTTGTGAGGCTGGCTTTTGGTATATCTGGTGCATGAACCTTCAAACCCATAAAGTGTTGATTCTGACCGTGGGTCAGACCATTGAGCCGCTCGAGTTCTCCCTAACCGAGCACGCCCCGCTGGGAGGGGTGGTGTTTGTGGCCAGCCAGTGGAGCTACCCGGTGGCGGGCGAGCTGCTCAAGCGCTACGGCGACCAGTTCAGGCATCACACCTTGCTCCTAGACGACCACGAAGACCTAGGTGAGGCCTACCGAAAGGGGATGGAGGCCCTGCAAAAGGCCCTAGAGTGGGACGGGAGACCGGTTCTGGTAGACATTTCCGGCGGAACCAAAACCATGGTGGCGGGGCTCGTCCTGGCCTTGAGCGGGAAGGGCATCACCTTTAGCTATGTGGGCGGGACAAAGCGCGACGCCCAGGGGAGGGTGGTAAGCGGCAGCGAACGCATG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCAAAGCCCCGAAAGGGGATTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.20,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 13898-16857 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKZ01000045.1 Meiothermus luteus strain KCTC 52599 contig_45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 13898 29 100.0 32 ............................. GACACCCAGATCAAGAGGGGGGAGATTAAGAC 13959 29 100.0 32 ............................. CCCCCACCCGCATCGGCCAGCCCGCCGCCAGG 14020 29 100.0 31 ............................. AACACCAAAACGCCTACACCAACCGCATCCT 14080 29 100.0 32 ............................. AACTTGGCGATTCCGGCGAACTTGGAAAAGCA 14141 29 100.0 32 ............................. CCGCACCGACCCTGCCTACGCTATTCCACCCC 14202 29 100.0 32 ............................. ACCAGCACCAGTACCAGCGCGGCGGCCCCCAC 14263 29 100.0 33 ............................. GTCGGAGAACTCCGTTTTGCGGTTGACGATGAC 14325 29 96.6 32 ............................A TCTTCGAGTATCCGGAGATCCCCGGGCAGACC 14386 29 100.0 32 ............................. GACTCCCCTTTGTCCCGGAGCACTGGTCGCGC 14447 29 100.0 32 ............................. TCAGAGACCGTCTGGCCGCCGAACAGGGCCAG 14508 29 100.0 32 ............................. AAAGCAAGTCAAGGTATCTGCCTACCCGGGGG 14569 29 100.0 32 ............................. CCCGCCAGGGCATTGGCCTCCATCAGCAGGGA 14630 29 100.0 32 ............................. TCAGGTTGCTCGCCATGCCGTAAAACCCGGTA 14691 29 100.0 32 ............................. CCCTCCTCGCTCAGGGGGTGGCCCCACAGTTG 14752 29 100.0 32 ............................. GCGGCCTCCTGGATGGCCCCCAGGGTGTAGCG 14813 29 100.0 32 ............................. CCATCAAACCCCATCTGCAACGCCAAATGTGG 14874 29 100.0 32 ............................. CCCTCGGCGGCAAGTGGAACGCTGAAGGCAAG 14935 29 100.0 32 ............................. TCAGCCTTCTCGGGCCAACCGAGCTGGAGTTT 14996 29 100.0 32 ............................. ATGGGGAAAAATAGCCTCTCTTTGAGACCCAT 15057 29 100.0 32 ............................. AGCGGGCAAGGGCCTTCAGGGCCACGGCGAAC 15118 29 100.0 32 ............................. TGGGGAGGGGTCCAAAGGACTCACCCCCACAG 15179 29 100.0 32 ............................. GAGCTGTTGGGAATGTTGGGAGTGTGTTGGGA 15240 29 100.0 32 ............................. GGGGAACCACTTCTGATGAATCGGGTAAAGTC 15301 29 100.0 31 ............................. GGAATATCGGCGACGTCTCGGCCCCCCCCCC 15361 29 100.0 32 ............................. ACGTAGATACCCCCCAAGCGGCAGGGTGGCCC 15422 29 100.0 32 ............................. TTCCGACAGCAAATCAGGCTGCCCCGTCGGCT 15483 29 100.0 32 ............................. GTGTATTCGGGTTTTCAGCTACCCTTCCTCGT 15544 29 100.0 32 ............................. GCGAATCCGCGGCTCTGGAATATCGCCGCGGA 15605 29 100.0 32 ............................. CCCCGACTTCCCTAGCAGGCTAATTGCAGGGT 15666 29 100.0 32 ............................. GACCGTCATCAAATCTACGTCTAACTGCTCGG 15727 29 100.0 32 ............................. GTCTGGAGACGCCTTTCCTGGTTGACCTTGTT 15788 29 100.0 32 ............................. CCACCCTCCAGGAGAACCACCCCATCTCCCAA 15849 29 100.0 32 ............................. GTTAGGGTGGGAGAGAAACAGTGGAAGCCCCT 15910 29 100.0 32 ............................. GGAGGGGTAAGGATTGGGACGAGGCGGTACTA 15971 29 100.0 33 ............................. GGCCGCTACGCTCAAATCAAAGGCTCCCGTCCA 16033 29 100.0 32 ............................. TTTTCCGCTTTGCGCGGGAACTCCCCCGCGTC 16094 29 100.0 33 ............................. TACGGTTTTGACCCAGAGGACAACCCCGACCTC 16156 29 100.0 32 ............................. CGGAACGCCAGCCGGTGCTTTCTGCCAATGGC 16217 29 100.0 32 ............................. CGCAGCCCCGGCTAAAGCCGGGGCTTTTTCAG 16278 29 100.0 32 ............................. GGGGTCGTGGCGGTCAGGTTGCCTACACTCCC 16339 29 100.0 32 ............................. CTGGTAGTTATTTTGAGCGGTCGGTTGCCGGT 16400 29 100.0 32 ............................. CGGGGGAACGTCCCCGATGATGAGTGGCGTGT 16461 29 100.0 32 ............................. GCCACCGCCATCCAGCGGGAGCGGGGAGTGGC 16522 29 100.0 32 ............................. CTCTGAAGGCTAAGCTGGAACGGGCTGAGGCC 16583 29 100.0 33 ............................. GGACCGCGCTAGCCGACCCAGCCCAGGTCAAGC 16645 29 100.0 33 ............................. CAGGTGGACTGGAGGAATCCCAAAGCCCAGTCC 16707 29 100.0 32 ............................. GCTTTGGCCGACCCGCGCAGCACGCCGGCAGA 16768 29 100.0 32 ............................. CGAATGAGCGCTTCGCGATTTAGCATGCCTGC 16829 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTATTCCCCGCACACGCGGGGATGAACCG # Left flank : CGCGGCTCCGGGCGAGCTTTGGGACCCCGAGGGCAACCTTCCAGGTGGGGTTGCGTATGGCTTGGATGGCGAGGATGAAACCTAGCCATGGTAGTCATCGTGCTTGAAAACGTGCCCAAGCGCCTGCGCGGGGAGCTGAGCCGGTGGATGCTGGAGGTAAGCACGGGCGTCTTCGTGGGCAGTATGACCGCCCTCGTGCGCGACCTTCTGTGGGAGAAGTGCGTGGAGAAAAAGACCGCAGGCCGGGTCTGCATGATGTACCGCACCAACAACGAACAGGGCTTTGAAGTGCGAACCCATGGCGACACCACCCGTGTCCTTGTAGACTTTGATGGTCTAACCCTGGTCGCTGTGAAGAACGCCGAGTGGCAGCGTATCCACGCCAAGCGTAAGAAACCAAAGGCGACCGAGAACCTTGAAAAAGCAAATCCCGAGTCTATCACTCAGGATTCAGACACTTCCGAGGGGGCTAACGGCTGAATTTGCTGTTAGAATCAAGC # Right flank : GCCGCCCACGCTCCCGTCTATGCGCTCATTCGCGTATTCCCCTCCGCATCACCCGCCCTAGGAAAGCCCTAGCCAGAGCATGTTGGCGTTTGGTTAGGGTTGGGATGGTTTACATGAAGAGATTGAGCAGAACCCAGCATAACACCCGGGCTACTCGGGAAACCAAACCGTTAATACTCGTTGGGTCTGCTCTTTTAATCAGGGGTGATGTGTGCAGCCACTGTGCCTACTGCGAGCAAAAGTACGCTTAGGTCGTCACTAAACCCCACCAAAGGGGCTAAATCGGTGACCAAGTCAATCGGCAGAAGAAAGTAAGCCAAGGCCCCCACAATAACTCGTTTAGCCCAGACCGGCGTGGTAGGGCTTTGGAGGACGTAGTAAAGCCAAAGGGCCTTTTCCACCAATTCCTGCCCTGCCCGGCAAGCAAAGCGACGGAGCTTGTCCCAAAAAGCAGCCTCGCTATAAACTTCCCGAGGCTGTATCCTGAAAAACTCGAGCTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7362-6238 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKZ01000006.1 Meiothermus luteus strain KCTC 52599 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 7361 37 100.0 36 ..................................... CTGCCATACCTACGAGCTGCGCGTGGGGCACCACCG 7288 37 100.0 36 ..................................... GGGGGATTCCCCCCCTTCCACCGTTTCCCTCAGCAG 7215 37 100.0 34 ..................................... GCTTTGGAAGAGCTACGGGCCAGTGCCGCCCAAA 7144 37 100.0 37 ..................................... TGCCAGGAGCTGCAGGGCTTCGGCTTTCCGGTGGATC 7070 37 100.0 36 ..................................... TAGGTGTTGTGATTGGACGCGCGCGCCTATTTGCGG 6997 37 100.0 36 ..................................... CGCTACAACTTCTACACCACTCTGGAGCGCACCCCC 6924 37 100.0 35 ..................................... CTGGCCACCTCGAGCAACTCTCCCAGCTCAACCTC 6852 37 100.0 35 ..................................... TGGCCGACTCTAGAGCTGGACAGGGAGGTTGGCGA 6780 37 100.0 35 ..................................... TTGGGATGCTTCGCCACCGCCTTGCGCACCTCCCG 6708 37 100.0 36 ..................................... GGCGACGCTGACAAAAATCGTTCAGGCGTTGGATAT 6635 37 100.0 35 ..................................... TAGGCCTCCTCCAGGAGCTTTGTGGCCACCTCTGG 6563 37 100.0 35 ..................................... TTGCCAACACTTGTTGGCCCTCGACCTGCAAGTAG 6491 37 100.0 35 ..................................... GAACCAGTCCCGGCCCCCCTCGGCTCGCCGGATAT 6419 37 100.0 35 ..................................... GGTAAAGTCGGAGACGCTGCCGTCAATCCGCTCGT 6347 37 100.0 36 ..................................... AGGGTGCCCCGCCCCCGCAGGCGGGCCAGCCCCCGC 6274 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== ===================================== ================== 16 37 99.8 36 GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Left flank : TCGGAAGACGGCCAGGCCCGGCTGGCCCGGGTGGCCAAGGTGTGCAAGAACTACGGCCAGCGGGTACAGATGTCGGTGTTTGAGTGTCGGGTGACGCGGGCCCAGCTCGAGGAAATGGAGGCCAAGCTGCTCAGAATTATGGAACCCGACAAGGACAGCCTGCGCATCTACACCCTTGTGGGTGGCCGCGAAAAGTGCCTGCGCGTCCACGGCCAGGACAAGTACACGGACTTCGACGACCCCTTGGTGGTCTAGGCCACGAGGGGGTGGCCGTAGGCCATACCGGCGATGCCGGTAACCTGCTGGCGCTTGCTTAGCTGCGCGAACCCCAAGCAAGCGCCAAAACCTAGGGGGGTTCGCGCAAGCCGAGAAATCGGCTAGGGGACATTGAAAACTCGTTTTTCCCTCACCTTCCCCCACCCTGCGTCGGAAGCCTTTTTTGGGGGGTTCGCGCAAAGGCTCCCTTGAACCCTGTCCAGCACGCGCGCTAAAATGGGGCC # Right flank : CTCCCACTCCGGCGGAAGGAGATACTGCTCGTCGCCAATGGCCACGGGGGATATTTGCTAGTGTTTCTTACGACCATTACAACCCCCTGTAGAGATTATCCAGCTCTGAAAGCGGGGCCTCCTCAACCTGGCGGCTCTGGGGACGGGTGAGCTGGGGTAGCACCCGCTCCACATCCTCTACCGTTTTGAGATGACCCAGATTCCACTGACCTAGGGCCTCCGGGAAGTAGCTGGGGTCCTCCAGGTATTCTTTGGCCTCCTCCGGGGAGGCCCCCGTCAATCGGGCTACAAAGTATCCGCTAAGATTTATCTCACCCATACCGTCCATCATAACACCGTTATCAGCAAACGAGCGGCCCTCATCCCAGCGCCCCAATATCTCACCCCAGTTAGACGGTAGAACAACCGGGTGAGATACACCCCCGAACCGGTCGGTCACCTGTTTGGGGGCCGGGTTTTGGGTGATGGCCGTGTAATAGCCCCCGTTACCGGCCGCCGTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACTCGGGCGAAAGCTCGAGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 5484-5151 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKZ01000132.1 Meiothermus luteus strain KCTC 52599 contig_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5483 36 100.0 36 .................................... GGTGCTGCCCCGGTCCCGTCTGGGGTCGGTCTACCA 5411 36 100.0 40 .................................... CTCTCCTGGACGGTTGGGCTCACTAACCCTGCGACCAACA 5335 36 97.2 38 ...................................C TGAACCCACCCCTTGCCGTACTGGGGATGGCTGATCTC 5261 36 100.0 39 .................................... TACCTAGGTCATTGCCTTTCCTCCTTTCTCCCCCTACTA 5186 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 99.4 38 GTCGCAAAACCAAAGCCCCGAAAGGGGATTGCAACT # Left flank : CCACGCCACAAAAAATCCAAAAGTGTGGGTTTGTAAGCATTCATCGCACAAACGGCAATTTTTGCCCCAGTTATCCACAGCCCTCTTGTGGATAACCTGGTTTTCTCATAAATACCCTTTCAGAGAGCCCCTTGCAGGACGGCGATTAACGGGGTATGC # Right flank : CAAAGTGAGATGAGGTGCCGTCCGGTGGGGGGTAGCTCTGTAAGTTTTTGTAGGGCTAGTTCGCCGTGTTTGAGCAGGTACATGGGGAAGGGGTAAGCCCTTTCTTGTGGAGCGCCGGGAGCTAGGTGGCGCTGGAGTCGGGCGAACTGGGCCCCGATGGTGTTTTCCTGTCGTATGGCGGAGTCTAGAATTTTGCGCTTTAGCCGCTCTAGCTCGTGGGCTATGCGCACTTGGGCCCGTCGCTTGGAGCGCGCCAGACTGGGGTCGGGTAGAAGGGCCTGTATTCTTTCCAGCTCAGCTTGGATGCGCTCGAGGTGCTCCTCTATGGCCTCTACACGCTCGTCCTGGCTCGCCAGGACATCCTTGAAGGCCCCCTCGGGGTCATCCTGGAAGGCCCAAGGGTCCAGGCCGTACTTTTGCAGGATACGGGCGATGGGTGGTTCAACCACCGTGGCCCTCATACGACCGACCACGGCGGGAGGGGTGAGGCCGTGTAAGGT # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAACCAAAGCCCCGAAAGGGGATTGCAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.90,-7.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 17169-21950 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKZ01000014.1 Meiothermus luteus strain KCTC 52599 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 17169 36 100.0 34 .................................... AAACTAGCTAGGCTTTCCTCGATGCGCTGATTGG 17239 36 100.0 35 .................................... CAATAAACTCGCGTCTAGTAATCGCGCGAAGCTCC 17310 36 100.0 37 .................................... TGGTCAGGCAGATCCTTGGGCACGGGCCCCACCACGA 17383 36 100.0 36 .................................... CCGAAGAAGTTGGCGCCGTCAGGCCCCTGGGCGCTG 17455 36 100.0 36 .................................... CGGTAGGCTGGCCTGGTTCTCCAAGAGCTTTCGCCT 17527 36 100.0 34 .................................... GCCGTGCATTTGGCGAGGCCTTTGAACGCGAGGC 17597 36 100.0 36 .................................... TCGGGGTAGAGGGAAAACTCGTTATCTGCAACCCTC 17669 36 100.0 35 .................................... CTGGCCAACCCGGTCAAGCTGGTGGGCGGTGTACC 17740 36 100.0 36 .................................... GAGGATGTGCCGTTCTGCTCTAACCCTCATCCTCTA 17812 36 100.0 36 .................................... TATCATGTCTATCACCCCGCGGGCATCGTACCACGC 17884 36 100.0 36 .................................... GAGCCTGAGACGCTCCAGTTCTCCCCTCTCATCTCT 17956 36 100.0 36 .................................... CAGGGCGTCCCCGTCCTGCGCTACTTCGGCTACCCC 18028 36 100.0 37 .................................... GGGCGCTGAACGGGCAGTAGTCATCCCTAACATCCAG 18101 36 100.0 36 .................................... CCCCGCGCCCGCCTGCGCCCCTGATAAGACGGGAGG 18173 36 100.0 37 .................................... TCCCGGAGGTAGGACTGAAACACGCGCACGGGGATGC 18246 36 100.0 36 .................................... GATGCCGGAGGAGCGCGTTTACGAGCGTCTAGAAGC 18318 36 100.0 36 .................................... CTCTCTGGCATCCGTAACGCCGCCAAGGCGTTCTTG 18390 36 100.0 35 .................................... TACCTTCACCCAGGATTGGCTTGCCCCCCGCATGT 18461 36 100.0 35 .................................... ACAATCTCTCCACCCGCACGCAAACGCTCCCAGGA 18532 36 100.0 36 .................................... TCTTGTATCTGGGCCACCTTTATAGCGGCCATCCTA 18604 36 100.0 36 .................................... TACCATGACTCTTGCCCATAACCGCCCACGCCCCAA 18676 36 100.0 36 .................................... CAGCTAGACCTTGAGCCGGTGGAGGCCCGCTGGCAA 18748 36 100.0 36 .................................... TCCAGCACCGGCATCACCGACTCCGAGACTCTCCAG 18820 36 100.0 37 .................................... TATCTCCTCCCGCCGGGGGTGGGTGCAGATTGTGCAC 18893 36 100.0 36 .................................... GCTCATTGGCGTTCACCTCCCGCGCCCACTCCAGGA 18965 36 100.0 36 .................................... ACGTACTCGTCCCGGTGGAGCCGGACCACGCCCACC 19037 36 100.0 36 .................................... CTCAATCAGGACGACGTTCCCCCAGACCCTGTGGGC 19109 36 100.0 36 .................................... GTGCAGGGCCTCCTCGGGGAAGAGGCTCCACCACCG 19181 36 100.0 37 .................................... CCCACGGTGCCGGCCACGCTGGCGTTCACCCGGATCG 19254 36 100.0 36 .................................... CGCGTCGGCGCTCGCGAGGGCACCGCTGGCATTGAG 19326 36 100.0 36 .................................... CAGCTCGTCGAGGCTGTTGATTTTGCGTGGTTCCAA 19398 36 100.0 36 .................................... GCTACCACGCCTCCGCCCTGAGCGGTGCGCCAACGG 19470 36 100.0 35 .................................... GCCCGTTGCTTGGCCTCATTAGTCAGCGCCACCGC 19541 36 100.0 36 .................................... GCATTGCAGGATTTGCCGTCGTTTTTGTTTGCGTAT 19613 36 100.0 35 .................................... ACCCACCGCCTGATTCCAGCTCAACGCCCAGCACC 19684 36 100.0 36 .................................... CGAGTAGGCGCGGCCATCCAAAATGGTTACGCCCGG 19756 36 100.0 35 .................................... GATGTTGGCCTCGAGGGGCCAGTGAAATACCTTGA 19827 36 100.0 37 .................................... CTCCGCACCGGCTCGTCATAGTCCGAGGCCCACCTGA 19900 36 100.0 36 .................................... GAGAACGCCACGGCCGAACTGCTCGAGGCCCACCGC 19972 36 100.0 36 .................................... CTGTGGATCAGCCCCCGCACCTGGGAGGCACTGGCC 20044 36 100.0 36 .................................... CCGCCGCTGATGCGCTGGTTCGAGCAGCTGGGCCTT 20116 36 100.0 36 .................................... ACGGCCTCGAGCCCGATGTCCCGCAGCCGGTCGCGC 20188 36 100.0 38 .................................... TAGGAGCCCACCTGCTGGAATGGCCGCTTGGAAATAGC 20262 36 100.0 37 .................................... CTCCGCACCGGCTCGTCATAGTCCGAGGCCCACCTGA 20335 36 100.0 37 .................................... GCAGAGAGCGCGGGAGCAAATTCGCCGCTGAGGGCGC 20408 36 100.0 35 .................................... ACTCGCCACCATGCGGTTGAAGCGTTTGCTGCCCC 20479 36 100.0 36 .................................... AGAAACTAGCATTGTTGTTGGAGTTACAGTTTTCGC 20551 36 100.0 34 .................................... CGGCCGCTACCGCCTGTACAACTCCTCGGCCCTC 20621 36 100.0 37 .................................... GGTCGCCAGATACACATGGTGCCACGAATCCCCCCCG 20694 36 100.0 37 .................................... GCCCAGCGGGTGCTGGATAAAGGGGGGATTACCTCTT 20767 36 100.0 36 .................................... TTCGCTAATCTGGACCTGGCTGAGGTGGCCCGGCTC 20839 36 100.0 36 .................................... CCGATACCGGGGACGCGGCCTGATCCAGCTCACGGG 20911 36 100.0 36 .................................... AATCCCGCGGGGTGGCTCGTGGAGGCGGGGGCGGAC 20983 36 100.0 35 .................................... CTACAATGGCTTTGGGAGCGCCATTGCTCCCAGGA 21054 36 100.0 37 .................................... CTGCAGGCCCGCCGGGAGGCACGGGCCTACGAGCTTG 21127 36 100.0 35 .................................... ATGCCACGGCCCGTGAGGGTTGTCGCCCCCGGGAA 21198 36 100.0 34 .................................... GCTGAAGCCGATGTCCACCTCAATGTATTCCAGG 21268 36 100.0 37 .................................... TTCTGTCGCATTCCCCGGCCCTACGGCAGCCTTAGAA 21341 36 100.0 36 .................................... GTCCTGGAGGGTGCGGAGGTTGATGCCGTGCGCCTC 21413 36 100.0 36 .................................... AGGCGGCGCAGCTGATTCTCCGATATGACCACGTAG 21485 36 100.0 35 .................................... ATAAAACCTCCTGAAACCTCCAAGGGGGGCCTATG 21556 36 100.0 35 .................................... TTCACGCCGTTACGCACCACATCGGCCTCCACGGT 21627 36 100.0 35 .................................... GAATTCCCGGCTCGGGGAACGGATACCCAGAGCAT 21698 36 100.0 36 .................................... ATGCGGATGGCCGCCTGCAGATGCCGCACCTCGCAG 21770 36 100.0 36 .................................... ACGAGGTTCTGCAACAGGCCCCGAATGGGGGCGGGG 21842 36 100.0 37 .................................... TCTGCGCTCAGAATGACCTGGTTCTCAGTTACCACGA 21915 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 67 36 100.0 36 GTCGCAAAGCCTGTTAGCCTCGTAGAGGATTGAAAC # Left flank : CGCTTACGATACCCCCTCGGACTCGAGGCGGGCCAAGCTCGTCAGACTCCTCAAGGGTTTTGGCGAAAGGCGGCAATACTCGGTCTTTGAGGCTCGGCTTACCCGCGAGCAGTGGGCCCACCTCAAGGGAAGGTTGGAGGCCTTGGTAGACAAAAAAGAGGACATCCTCGCAGTCTACTTCCTTCCCCCCGAGGCCGTGGGCCGGACCTGGCGGGTCGGCCACGAAGGGCTCAAGCGTCTCGAGGACCCTGACTTTGTATAGCGAGCGCGAAGGCCACCTATGCAAGACCCCGGTAGCCAAGCCGGGGTTCTCCTCGCTCTGGAGGGTGCTCTAACCCTATGCAGGGGGACCTCGAGGCTTCCGTCGCGTGCGCACGGCTTCTTTAGGGCAAAAACCCCCTTTTCCTCCCCAAGTACCCTGGCCCCGCTTGCGCATAGTACCCCCGCGTGCGAAAATGGCCCTAGCGGGATTGTCCAGCACGGCGCTCGCAGGGGCGTCC # Right flank : CCTCCCCGCTCAGGAGCATCTCCCGGGCCCTGGGGGTCCAATCCACGTTCACCGCCCAGAGCCCGTCCGGGCGGACCTCGAGGTCGAACCACCCGGCGGCGGGAGCGGGCCCGGCGTTGAAGATGTTGAGAGCCCCGTGCTCGTAGTCGATGGAAAGCCGGTTCCCCCACTCCCGCCAGCGCTCCATGACCGAGCGGGCCGATACGTCGTCAAAAACGAAGACCCCTTTGGTGGTCTCGATGCGCCCGAAGGGGAAAACGCGAAACTCCCGGGGAGGTTCTCGCCCCGGAAGCTCAACCGTGAGGGTGTATTGCCGCGTCATGGCCCATGCAAAACCCCAGGCAAACGCCTGGGGGTAGAGTTTCGCTAGCTTAACCTCACCCTAGCGCAAAGCGGGACTCAGGTCAAGGGGCGTGGTATACTGGAGTTAACCCGCCGGGCTGGGCCCGGGTTCCTGATAGCCCGGTGCAGGACGCGCGGCCTTCCGGGAGGCCGTAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAGCCTGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 2 24657-25916 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKZ01000014.1 Meiothermus luteus strain KCTC 52599 contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 24657 36 100.0 36 .................................... CTCCCCGCTCAGGAGCATCTCCCGGGCCCTGGGGGT 24729 36 100.0 36 .................................... CTCGACCAACACCCGCGGGGCCAGGGGACCGTGGAC 24801 36 100.0 34 .................................... CGATCCGATGTGGAAGGTTAGCGCCAACCCGGTC 24871 36 100.0 37 .................................... ATGCGCTCCTGATGCTGATCTAGCCTCTCGTGTAGCC 24944 36 100.0 36 .................................... ATTCTGGCGCTGGGCCTGGACGGGGCCCTCGGGGAT 25016 36 100.0 34 .................................... CGGGTGGAGACGCCGAGGATTTCGGCGGCCTCAC 25086 36 100.0 36 .................................... CTGCTAGCAGCTCGAACCTCAGCGGCAACGGTTCCC 25158 36 100.0 36 .................................... ACCTCCGAGGCCGCCCTTGGGGCACTCCACGAGGGC 25230 36 100.0 33 .................................... AGGAGGGCGTCGGTGCTTCCACTAAGGGACAAA 25299 36 100.0 35 .................................... TTTTAGCTTTTTTAGTAGCTTTTCTACCCCACTTT 25370 36 100.0 36 .................................... AAGTCCTAGACCCGTTTCTAAAAAACAAATAAGGCC 25442 36 100.0 38 .................................... CTCTGCCCCCCTTTTAGCCCAGGAAGTCCAGTCCAAAC 25516 36 100.0 37 .................................... CTCTCACCTTTCTAAGATTTTAGTCAAGGACGGTCAG 25589 36 100.0 36 .................................... ACCCTTCCACTCGCGTGAAGGAGGAGGTAGCCAAGA 25661 36 100.0 38 .................................... AAGCACCGTCACCTTCTCTTCCGCCACACCCTCAGGGA 25735 36 100.0 38 .................................... GTCAGAAACCCGGTACTAGACGAAATCAGCTACCTAAT 25809 36 100.0 36 .................................... AGTCCAGGGAGGACTTATAGAATTTTCGCAAGGAAT 25881 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 18 36 100.0 36 GTCGCAAAGCCTGTTAGCCTCGTAGAGGATTGAAAC # Left flank : GGCGGCGGCGTAGCTCCCCCCTTGAACATCAGTAGTCAGGTTTTGCCCCAGAACTGCCACCGCGATGGCCACATTGGCCCACTGGATGGCGGCCTCTTTGGACCGCCAGACCCCCTCGGGAGGAGCCAGCATTTCCAAACGCCACCCTTCGGGCAGGACCAGGCCCGTGTCCCCCCCGAGGTCGGCCAGGAGCTGGGCCAGTTCCTGGCCCGTGGCCCCAGCCGGGCCCTCGGCGGTGGCCACCCGGAGCGCCCCCACCTCGTTGTCCCGGGCCCAGTAGCGGATGGCGTCCAGCTTCACCAGCCAGGGCAGGGCTAGGGCCCGCCACAGCCCCCGCTCCCAGGGGCGCTTGGGGCCGTAGGGGGTGTAGAGCAGCCAGAGCCCCTCCTGCAAGGGGTGCTCCTGCCCCTGGGCATCCCGCACCCACCACGCCCCCTCCCGCCAGCGCAGGGCTCCGGGGTGCCACACGTCCAGCTGGGGCCAGACTAGCCCGTCCTCCT # Right flank : CAACCCCAAGCTTCACGTCGGCGGTCTGCGGTGCCCTGGGCGAGGCGGTGCTGCTAGCGCTTGAGGTCGTACCTCGAAGCACCTTCACGCCTTGGGTTTATTTACTGGCCAAAGCGCCGCTCGCGTTTTTGGTAGTCACGCACGGCGCGCAGGAAGTCCACCCTGCGGAAAGCTGGCCAGAAGGCGTCAAAAAAGTAATACTCGCTGTAGGCGGCCTGCCAGAGCAAAAACCCCGAAAGGCGTATTTCCCCTGAGGTGCGGATGATGAAGTCGGGGTCGGGGACACCTGCGGTGTAGAGCCGTTCGGAGATGTGCTGCATGTCCAGCTCCTCGGCCAGCTCCTCGGGAGACTTACCGGTCTGGGCTGCTTCCAGGAGCAGGCTTTTGACCGCGTCTACTATTTCCTCCCGGCCGCCGTAGCCCATGGCGATTTGCAGGAGCATGCCGCTGTGATGGGCGGTGGCCTGCTCTAGCTCCTCTAGGGCCTCCAGTACCTTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAAGCCTGTTAGCCTCGTAGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA //