Array 1 6882-5218 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNJ01000086.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N29341 SEEH9341_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 6881 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 6820 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 6759 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 6698 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 6631 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 6570 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 6509 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 6448 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 6387 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 6326 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 6265 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 6204 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 6143 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 6082 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 6021 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 5960 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 5899 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 5838 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 5777 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 5674 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 5613 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 5552 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 5491 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 5430 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 5369 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 5308 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 5247 29 96.6 0 A............................ | A [5220] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 24143-23138 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMNJ01000086.1 Salmonella enterica subsp. enterica serovar Heidelberg str. N29341 SEEH9341_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24142 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 24081 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 24020 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 23959 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 23898 29 100.0 33 ............................. GCGAGGTCAATAAAAAAATGGTGTGGCTTTACC 23836 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 23775 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 23714 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 23653 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 23592 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 23531 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 23470 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 23409 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 23348 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 23287 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 23226 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 23165 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //