Array 1 3061628-3061374 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011455.1 Mycobacterium bovis strain BCG-1 genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3061627 36 100.0 38 .................................... ACGGAAACGCAGCACCAGCCTGACAATCTTATTCTCGC 3061553 36 100.0 37 .................................... ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 3061480 36 100.0 35 .................................... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 3061409 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GANGGGACGGAAACTCGACACCGACATGACGGCGGTGCCGCACTTGACGCAGTCGTCAGNNCCAAANNCCNNNGANGGGACNGAAACTCGACACCGACATGACGCCNGTGCCGCACTTGACGCAGTCGTCAGACCCAAAACCCCGAGANGGGACGGAAACCTTTGCGAAGTCACCTNNCCCANACCNGCGAAGCGCCTGTCGNGAGANCCAAAACCCCGAANAGGGACGGAAACCTNNNTCCGGAAAGTCNCGTCNCCNNGANANNCNNNNNNCNTGTCGTCAGACCCAAAACCCCGAGAGGGGACGNAAACTCGGAANCCTNCACCTCCTCCGCAGNNGCGCCATGCTCCCCANGNCGTCAGACCCCAAAACCCCGAGAGGGAACNGAAATCCAGCACCACATCCGCAGCTGCGGCATGCTCCCGAAGTCGTCAGACCCAAAACCCCGAGANGGGACGGAAACGCGAGGAACCGTCCCACCTGGGCCTGCCCCCAGCGG # Right flank : TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 3062113-3062295 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011455.1 Mycobacterium bovis strain BCG-1 genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 3062113 38 97.4 36 ............N......................... TGAACACGCNGATACCTATTTGGTCGGGAGTGATAA 3062187 38 100.0 33 ...................................... GACAGGGTGCGGTGGTCGCTGATCGGCTCCCCG 3062258 38 97.4 0 .....................................C | ========== ====== ====== ====== ====================================== ==================================== ================== 3 38 98.3 35 AGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACT # Left flank : TTTGGGTCTGACGACCCGCTGGGGGCAGGCCCAGGTGGGACGGTTCCTCGCGTTTCCGTCCCNTCTCGGGGTTTTGGGTCTGACGACTTCGGGAGCATGCCGCAGCTGCGGATGTGGTGCTGGATTTCNGTTCCCTCTCGGGGTTTTGGGGTCTGACGNCNTGGGGAGCATGGCGCNNCTGCGGAGGAGGTGNAGGNTTCCGAGTTTNCGTCCCCTCTCGGGGTTTTGGGTCTGACGACANGNNNNNNGNNTNTCNNGGNGACGNGACTTTCCGGANNNAGGTTTCCGTCCCTNTTCGGGGTTTTGGNTCTCNCGACAGGCGCTTCGCNGGTNTGGGNNAGGTGACTTCGCAAAGGTTTCCGTCCCNTCTCGGGGTTTTGGGTCTGACGACTGCGTCAAGTGCGGCACNGGCGTCATGTCGGTGTCGAGTTTCNGTCCCNTCNNNGGNNTTTGGNNCTGACGACTGCGTCAAGTGCGGCACCGCCGTCATGTCGGTGTCG # Right flank : CGGANTTGATCGACGCGAACCTGTCTGACGCGAACCTGTTTCCGNCCCTNNTCGGGGTTTTNGGNCTGACGACGGCTGGAAAAGGGCGCGGGGCAACCGCATCGTCAAGAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACGCGTTGTGGTCGTGTCGTGGAGNCTGTATTTCGCTGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCATTAGTTGGTGTTGTGATCGCTAAACGCCGGGGCAGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACCTATCCGCGGGAAGAGATCACGAATCCGGCGTCGAAGGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACATGCTGAGCTGAGGCGCCGGATGATGGTGGTGCTGAAGGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACTGACAGGGTGCGGTGGTCGCTGATCGGCTCCCCGAGTTTCCGTCCCCTCTCGGGGTGAACCG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTCCGTCCCCTCTCGGGGTTTTGGGTCTGACGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 3 3062733-3062405 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011455.1 Mycobacterium bovis strain BCG-1 genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3062732 36 100.0 38 .................................... CTTCAGCACCACCATCATCCGGCGCCTCAGCTCAGCAT 3062658 36 100.0 38 .................................... CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 3062584 36 100.0 36 .................................... TGCCCCGGCGTTTAGCGATCACAACACCAACTAATG 3062512 36 100.0 36 .................................... CAGCGAAATACAGNCTCCACGACACGACCACAACGC 3062440 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 100.0 37 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GGCCACCTCCATGGTCCTCGACGCGATCGAGCAAGCCATCTGGACCCGCCAACAAGAAGGCGTACTCGACCTGAAAGACGTTATCCACCATACGGATAGGGGATCTCAGTACACATCGATCCGGTTCAGCGAGCGGCTCGCCGAGGCAGGCATCCAACCGTCGGTCGGAGCGGTCGGAAGCTCCTATGACAATGCACTAGCCGAGACGATCAACGGCCTATACAAGACCGAGCTGATCAAACCCGGCAAGCCCTGGCGGTCCATCGAGGATGTCGAGTTGGCCACCGCGCGCTGGGTCGACTGGTTCAACCATCGCCGCCTCTACCAGTACTGCGGCGACGTCCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGGGGCGGTTCACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCA # Right flank : TCTTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCCGTCGTCAGNCCNAAAACCCCGANNAGGGNCGGAAACAGGTTCGCGTCAGACAGGTTCGCGTCGATCAANTCCGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTTTATCACTCCCGACCAAATAGGTATCNGCGTGTTCAAGTCGTCAGACCCAAAACCCCGAGANGGGACGGAAACTCGACACCGACATGACGGCGGTGCCGCACTTGACGCAGTCGTCAGNNCCAAANNCCNNNGANGGGACNGAAACTCGACACCGACATGACGCCNGTGCCGCACTTGACGCAGTCGTCAGACCCAAAACCCCGAGANGGGACGGAAACCTTTGCGAAGTCACCTNNCCCANACCNGCGAAGCGCCTGTCGNGAGANCCAAAACCCCGAANA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 4 3065256-3064647 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011455.1 Mycobacterium bovis strain BCG-1 genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================== ================== 3065255 27 96.3 46 .......N................... GCGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAGGTCGTCAGA 3065182 27 100.0 46 ........................... CGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGGGTCGTCAGN 3065109 27 100.0 50 ........................... CAGGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGTCGGTCGTCAGA 3065032 27 100.0 49 ........................... ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAGGTCGTCAGA 3064956 27 100.0 45 ........................... TTCGTCGACCATCATTGCCATTCCCTNTCCCCACGTGTCGTCAGA 3064884 27 96.3 50 N.......................... TTGCGNCAACCCTTTCGGTGTGATGCGGATGGTCGGCTCGGGTCGTCAGN 3064807 27 100.0 34 ........................... CTTGAATAACGCGCAGTGAATTTCGCGGATCAGA Deletion [3064747] 3064746 27 100.0 46 ........................... CCGGCAACAATCGCGCCGGCCCGCGCGGATGACTCCGGTCGTCAGA 3064673 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ================================================== ================== 9 27 99.2 46 CCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CTTGAACACGGAGCCGTGCACATGCCGTGGCTCAGGGGTGTCGTCAAGCCNAANNNCNCNANNGGGGACAGGNNANAGNCCTCAGTAGNACGTCATACGCCGACCNNNCATCAGGTCGTCAGNCCAAAANCCCCNAGANGGGACNGAAANNTTTCTGNNACNNNNNNNNGGANTNACNGGCTTAGGTNGTNCANNNNCAAAACCCNGANNGAGANNNNNNNGNAANACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCTGTCGTCAGCCCCNAAAACCCCCGAGAGGGGACGGAAAACCTGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTGGNCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACACGACGTTAGGGCATGCAGCATGCCGTCCCCGTNTTTGAGTCGTCAGACCAAAAACCCCGAGAGGGNNCGGAAACTGCNCNTGAGCAACGCCANCATCCGGCGCCGCAGCTCCGCGTCGTCAGA # Right flank : CGCATGGNCCCGGGCGAGCTGCAGATGGTCCGGGAGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCACGTCGTCAGACCCAAAACCCCGAGAGAGGACGGAAACTCGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTTGGAGCGTGTCACCGCAGACGGCACGATTGAGACAAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCTCAGCTCAGCATCGCTGATGCGGTCCAGCTCGTCCGTGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCAACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCGAGTCGTCAGACCCAAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 5 3066308-3065905 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011455.1 Mycobacterium bovis strain BCG-1 genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 3066307 36 100.0 38 .................................... TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 3066233 36 100.0 41 .................................... CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGT 3066156 36 100.0 36 .................................... TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAA 3066084 36 100.0 37 .................................... TCGCGGCGCGGCATGGCACGGCAGGCGTGGCTAGGGG 3066011 36 100.0 35 .................................... ATGTGCGCCGTCGCCGTAAGTGCCCCANGGCCCGT 3065940 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 6 36 100.0 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : ATTTCGACGACAATTCGTTGNCCACGAATTTTCAGAGTCGTCAGACCCAAAAACCCCGAGAGGGGACGGAAACACANCCCACGCGTTACCGCTGGCGCGCATCATTCATCGAGTCGTCAGACCCAAAAACCCCGAGAGGGGACGGAAAACTTGAACACGGAGCCGTGCACATGCCGTGGCTCAGGGGTGTCGTCAAGCCNAANNNCNCNANNGGGGACAGGNNANAGNCCTCAGTAGNACGTCATACGCCGACCNNNCATCAGGTCGTCAGNCCAAAANCCCCNAGANGGGACNGAAANNTTTCTGNNACNNNNNNNNGGANTNACNGGCTTAGGTNGTNCANNNNCAAAACCCNGANNGAGANNNNNNNGNAANACCAATGCGTCGTCATTTCCGGCTTCAATTTCAGCCTGTCGTCAGCCCCNAAAACCCCCGAGAGGGGACGGAAAACCTGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTGGNCGTCAGACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA //