Array 1 19704-18546 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALXV01000023.1 Neisseria meningitidis 80179 NM80179.contig.22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 19703 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 19637 36 100.0 30 .................................... GCCCCTGCTCGCGCACCGCCGCAACCTGCC 19571 36 100.0 30 .................................... GGTCAGATTACAACAACGTTGAGCGTGTGT 19505 36 100.0 30 .................................... TCTTTTGACAACAATTTCACTGGCGAAATG 19439 36 100.0 30 .................................... TCATTAAATGATGTATCACAAGCACTTTTT 19373 36 100.0 30 .................................... TACATCGGCGGGATGTTTCAGTTCGTTTAT 19307 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 19241 36 100.0 30 .................................... ACGGCTGCCGCAACGCCGCCCGAAACCATC 19175 36 100.0 30 .................................... GAGCATCTATTAGGGGTGAAGGTAGATCTT 19109 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 19043 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 18977 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 18911 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCGTCATGACG 18845 36 100.0 30 .................................... AAAAACTTTTTAGGGGGTCGGAAAAAATGA 18779 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 18713 36 100.0 30 .................................... AGTAAGATGAGAAAATTATTGGGGGGTGGC 18647 36 100.0 30 .................................... ATGAATTGCAGATTATGCAACCAAAACGCT 18581 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //